View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21457_low_4 (Length: 450)

Name: NF21457_low_4
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21457_low_4
NF21457_low_4
[»] chr3 (36 HSPs)
chr3 (259-435)||(41961575-41961751)
chr3 (264-418)||(14216867-14217021)
chr3 (264-418)||(14222996-14223150)
chr3 (263-428)||(55401040-55401194)
chr3 (261-401)||(14209105-14209245)
chr3 (332-432)||(28917962-28918062)
chr3 (309-429)||(750593-750714)
chr3 (377-429)||(10335329-10335381)
chr3 (317-429)||(4990950-4991062)
chr3 (261-401)||(28812507-28812647)
chr3 (265-404)||(4987222-4987361)
chr3 (286-411)||(14832081-14832206)
chr3 (263-363)||(34185052-34185152)
chr3 (264-429)||(15999951-16000111)
chr3 (267-426)||(14829657-14829816)
chr3 (287-429)||(15796247-15796389)
chr3 (261-366)||(49651714-49651818)
chr3 (261-420)||(26492143-26492291)
chr3 (263-410)||(27505229-27505370)
chr3 (265-429)||(24204983-24205136)
chr3 (334-428)||(8587021-8587115)
chr3 (388-425)||(7171470-7171507)
chr3 (377-429)||(3164068-3164120)
chr3 (377-429)||(8383221-8383273)
chr3 (339-404)||(20503454-20503519)
chr3 (263-325)||(5440967-5441030)
chr3 (263-313)||(3163971-3164021)
chr3 (334-413)||(10954932-10955011)
chr3 (263-365)||(16789040-16789141)
chr3 (263-317)||(17276792-17276846)
chr3 (390-436)||(39001989-39002035)
chr3 (260-322)||(40993272-40993334)
chr3 (377-426)||(35994780-35994829)
chr3 (377-429)||(3610597-3610649)
chr3 (377-413)||(3865599-3865635)
chr3 (377-413)||(10318077-10318113)
[»] scaffold0003 (1 HSPs)
scaffold0003 (263-435)||(241552-241724)
[»] chr6 (38 HSPs)
chr6 (261-428)||(8365446-8365613)
chr6 (263-429)||(16766661-16766827)
chr6 (263-429)||(9107299-9107465)
chr6 (263-435)||(34595092-34595253)
chr6 (261-429)||(8776906-8777068)
chr6 (377-428)||(853902-853953)
chr6 (334-429)||(7977830-7977925)
chr6 (328-435)||(10770668-10770774)
chr6 (260-322)||(28715355-28715417)
chr6 (330-420)||(12696297-12696387)
chr6 (377-429)||(7938080-7938132)
chr6 (287-366)||(9522918-9522997)
chr6 (264-428)||(31384885-31385048)
chr6 (377-429)||(426557-426609)
chr6 (377-429)||(9027142-9027194)
chr6 (339-420)||(16833281-16833362)
chr6 (377-428)||(3398584-3398635)
chr6 (378-429)||(5000670-5000721)
chr6 (261-429)||(10294071-10294239)
chr6 (261-429)||(18367801-18367968)
chr6 (263-334)||(24645529-24645600)
chr6 (263-435)||(34073278-34073448)
chr6 (377-429)||(3209346-3209397)
chr6 (258-322)||(4878003-4878066)
chr6 (265-429)||(4118264-4118428)
chr6 (303-366)||(17302584-17302647)
chr6 (263-425)||(9629351-9629513)
chr6 (264-413)||(17841530-17841668)
chr6 (261-322)||(29020972-29021034)
chr6 (377-418)||(9658854-9658895)
chr6 (329-366)||(9911523-9911560)
chr6 (261-322)||(17327588-17327649)
chr6 (377-425)||(1681726-1681774)
chr6 (377-417)||(4877918-4877958)
chr6 (389-429)||(5732565-5732605)
chr6 (389-425)||(6389711-6389747)
chr6 (377-425)||(19044432-19044480)
chr6 (318-366)||(21395292-21395340)
[»] chr1 (38 HSPs)
chr1 (261-435)||(40917709-40917881)
chr1 (263-429)||(47989462-47989627)
chr1 (263-413)||(18556385-18556535)
chr1 (265-429)||(1486646-1486804)
chr1 (261-401)||(9828036-9828176)
chr1 (287-429)||(6612124-6612266)
chr1 (262-366)||(30173690-30173794)
chr1 (262-366)||(31694638-31694742)
chr1 (377-428)||(48040505-48040556)
chr1 (377-427)||(398808-398858)
chr1 (377-428)||(10572632-10572683)
chr1 (382-429)||(10577783-10577830)
chr1 (330-421)||(5376496-5376587)
chr1 (263-402)||(32461393-32461531)
chr1 (264-334)||(40258874-40258944)
chr1 (263-426)||(5944248-5944413)
chr1 (377-429)||(2896164-2896216)
chr1 (262-366)||(6427491-6427595)
chr1 (377-429)||(13011259-13011311)
chr1 (261-321)||(18471356-18471416)
chr1 (377-429)||(34298400-34298452)
chr1 (339-420)||(48450592-48450673)
chr1 (377-428)||(1262849-1262900)
chr1 (377-428)||(5927383-5927434)
chr1 (331-366)||(6332697-6332732)
chr1 (260-307)||(21365989-21366036)
chr1 (263-322)||(22515827-22515886)
chr1 (377-428)||(39130810-39130861)
chr1 (263-413)||(46348323-46348462)
chr1 (377-435)||(14359564-14359621)
chr1 (330-401)||(24577182-24577253)
chr1 (265-322)||(16297223-16297280)
chr1 (287-328)||(17408756-17408797)
chr1 (397-426)||(18190163-18190192)
chr1 (261-325)||(5898204-5898268)
chr1 (383-419)||(34315686-34315722)
chr1 (377-409)||(37598816-37598848)
chr1 (262-322)||(37598891-37598951)
[»] chr7 (38 HSPs)
chr7 (263-428)||(24339607-24339772)
chr7 (267-366)||(27229244-27229343)
chr7 (329-428)||(27945006-27945105)
chr7 (261-366)||(7438733-7438838)
chr7 (261-425)||(5409769-5409927)
chr7 (263-427)||(43027404-43027562)
chr7 (268-435)||(43249951-43250118)
chr7 (263-334)||(598256-598327)
chr7 (265-404)||(9408265-9408404)
chr7 (334-420)||(24105651-24105737)
chr7 (265-366)||(26033392-26033493)
chr7 (330-427)||(13770657-13770754)
chr7 (262-322)||(15680869-15680929)
chr7 (264-408)||(11665370-11665514)
chr7 (263-322)||(21880212-21880271)
chr7 (389-433)||(11722153-11722197)
chr7 (377-429)||(13557787-13557839)
chr7 (263-366)||(2334277-2334379)
chr7 (287-366)||(6028652-6028731)
chr7 (263-322)||(17852060-17852119)
chr7 (309-401)||(25822647-25822739)
chr7 (309-429)||(26329357-26329477)
chr7 (261-366)||(9778527-9778626)
chr7 (263-321)||(29763129-29763187)
chr7 (344-429)||(25481866-25481951)
chr7 (382-429)||(18213082-18213129)
chr7 (263-322)||(21864868-21864927)
chr7 (389-435)||(4017849-4017895)
chr7 (389-430)||(1433417-1433458)
chr7 (377-418)||(2034416-2034457)
chr7 (377-420)||(7973168-7973214)
chr7 (397-429)||(9778472-9778504)
chr7 (399-435)||(10230130-10230166)
chr7 (317-365)||(11272569-11272617)
chr7 (377-433)||(13585267-13585323)
chr7 (330-366)||(18039026-18039062)
chr7 (377-429)||(21141025-21141077)
chr7 (377-425)||(26733272-26733320)
[»] chr8 (29 HSPs)
chr8 (263-425)||(22651944-22652106)
chr8 (261-426)||(29510231-29510396)
chr8 (263-410)||(15816058-15816205)
chr8 (309-429)||(2572031-2572151)
chr8 (264-401)||(29447040-29447177)
chr8 (263-365)||(21465440-21465542)
chr8 (377-429)||(926831-926883)
chr8 (261-429)||(22197669-22197837)
chr8 (339-428)||(25192352-25192441)
chr8 (263-413)||(36450694-36450833)
chr8 (263-321)||(14134760-14134818)
chr8 (377-435)||(18170525-18170583)
chr8 (377-435)||(18634093-18634151)
chr8 (261-322)||(5813652-5813713)
chr8 (262-420)||(8343289-8343447)
chr8 (377-426)||(13437007-13437056)
chr8 (261-322)||(18407779-18407840)
chr8 (377-422)||(27213518-27213563)
chr8 (265-429)||(44067480-44067644)
chr8 (263-428)||(11927015-11927180)
chr8 (263-420)||(28745471-28745628)
chr8 (264-307)||(3658228-3658271)
chr8 (377-428)||(4673468-4673519)
chr8 (263-366)||(29447471-29447574)
chr8 (261-307)||(13397626-13397672)
chr8 (377-418)||(3677761-3677802)
chr8 (377-410)||(22204622-22204655)
chr8 (377-425)||(24196640-24196688)
chr8 (377-429)||(24857973-24858025)
[»] chr5 (44 HSPs)
chr5 (264-429)||(21541994-21542159)
chr5 (287-429)||(21522714-21522856)
chr5 (287-429)||(21533280-21533422)
chr5 (263-410)||(39698524-39698671)
chr5 (267-396)||(30183546-30183675)
chr5 (377-435)||(4105215-4105273)
chr5 (17-180)||(29228933-29229103)
chr5 (260-425)||(36642689-36642853)
chr5 (263-334)||(16304366-16304437)
chr5 (377-428)||(22013379-22013430)
chr5 (334-425)||(21191056-21191147)
chr5 (334-427)||(6247588-6247681)
chr5 (377-429)||(15382441-15382493)
chr5 (265-425)||(19579669-19579829)
chr5 (263-366)||(30098353-30098456)
chr5 (330-429)||(13287395-13287494)
chr5 (390-435)||(21137647-21137692)
chr5 (264-429)||(6401462-6401627)
chr5 (263-366)||(7677732-7677835)
chr5 (377-428)||(19820437-19820488)
chr5 (339-423)||(24906306-24906390)
chr5 (377-420)||(30135286-30135329)
chr5 (378-429)||(41995435-41995486)
chr5 (377-419)||(6072357-6072399)
chr5 (334-429)||(6326297-6326392)
chr5 (377-426)||(22299523-22299572)
chr5 (261-322)||(43564941-43565002)
chr5 (377-429)||(19552586-19552638)
chr5 (377-429)||(25888338-25888390)
chr5 (262-322)||(27932295-27932355)
chr5 (316-429)||(37328826-37328939)
chr5 (389-429)||(42469185-42469225)
chr5 (262-297)||(6326252-6326287)
chr5 (377-428)||(6770508-6770559)
chr5 (263-334)||(42893408-42893479)
chr5 (263-313)||(2436980-2437030)
chr5 (261-367)||(11685965-11686070)
chr5 (339-413)||(14674249-14674323)
chr5 (377-418)||(15410491-15410532)
chr5 (377-426)||(22423855-22423904)
chr5 (263-307)||(5182673-5182717)
chr5 (389-425)||(16304479-16304515)
chr5 (262-298)||(28862382-28862418)
chr5 (377-429)||(41558726-41558778)
[»] scaffold0086 (1 HSPs)
scaffold0086 (263-366)||(2955-3058)
[»] chr4 (30 HSPs)
chr4 (261-425)||(19482636-19482800)
chr4 (268-365)||(30838238-30838335)
chr4 (263-429)||(23292926-23293081)
chr4 (334-435)||(21945461-21945562)
chr4 (260-401)||(24613627-24613768)
chr4 (260-366)||(22234816-22234922)
chr4 (264-366)||(30982808-30982910)
chr4 (264-420)||(3947702-3947852)
chr4 (263-426)||(5414101-5414264)
chr4 (265-362)||(19312366-19312463)
chr4 (263-425)||(36635292-36635449)
chr4 (377-429)||(35158028-35158080)
chr4 (263-322)||(34306744-34306803)
chr4 (377-435)||(49430984-49431041)
chr4 (332-413)||(30298926-30299008)
chr4 (332-413)||(30327794-30327876)
chr4 (334-435)||(12797338-12797437)
chr4 (377-428)||(12895317-12895368)
chr4 (377-428)||(28084486-28084537)
chr4 (263-322)||(40179576-40179635)
chr4 (377-420)||(40481610-40481653)
chr4 (264-325)||(14465006-14465067)
chr4 (261-322)||(16073454-16073515)
chr4 (377-426)||(31603052-31603101)
chr4 (261-322)||(35161096-35161157)
chr4 (309-358)||(46083966-46084015)
chr4 (261-321)||(3064866-3064926)
chr4 (377-429)||(12708110-12708162)
chr4 (263-299)||(21539807-21539843)
chr4 (389-429)||(24343471-24343511)
[»] scaffold0008 (1 HSPs)
scaffold0008 (265-366)||(263303-263404)
[»] scaffold0007 (1 HSPs)
scaffold0007 (265-429)||(225199-225363)
[»] scaffold0450 (1 HSPs)
scaffold0450 (263-404)||(8564-8705)
[»] chr2 (31 HSPs)
chr2 (265-429)||(15657828-15657992)
chr2 (263-357)||(26769547-26769641)
chr2 (261-363)||(37419773-37419875)
chr2 (263-429)||(34784911-34785077)
chr2 (263-412)||(12668352-12668501)
chr2 (377-428)||(19536441-19536492)
chr2 (263-366)||(30717459-30717562)
chr2 (263-365)||(35056896-35056998)
chr2 (265-429)||(36756275-36756439)
chr2 (334-425)||(18421931-18422022)
chr2 (334-428)||(21624231-21624326)
chr2 (263-429)||(18420363-18420529)
chr2 (262-425)||(15972841-15972993)
chr2 (334-435)||(30404850-30404950)
chr2 (263-366)||(11223793-11223895)
chr2 (377-428)||(20539717-20539768)
chr2 (264-367)||(44860346-44860449)
chr2 (263-420)||(18840953-18841099)
chr2 (379-428)||(33519751-33519800)
chr2 (263-319)||(31456560-31456616)
chr2 (377-428)||(4142883-4142934)
chr2 (339-415)||(6940233-6940309)
chr2 (346-418)||(30335392-30335464)
chr2 (265-315)||(15116755-15116805)
chr2 (377-435)||(27459985-27460042)
chr2 (334-413)||(37558957-37559036)
chr2 (265-322)||(2438661-2438718)
chr2 (316-365)||(4882678-4882727)
chr2 (377-418)||(12940978-12941019)
chr2 (382-418)||(20242775-20242811)
chr2 (377-429)||(23058486-23058538)
[»] scaffold0223 (1 HSPs)
scaffold0223 (330-428)||(20137-20235)
[»] scaffold0136 (1 HSPs)
scaffold0136 (262-366)||(3777-3881)
[»] scaffold0122 (1 HSPs)
scaffold0122 (264-429)||(8630-8795)
[»] scaffold0053 (2 HSPs)
scaffold0053 (377-429)||(8762-8814)
scaffold0053 (263-322)||(8858-8917)
[»] scaffold0018 (1 HSPs)
scaffold0018 (377-425)||(178862-178910)
[»] scaffold0306 (1 HSPs)
scaffold0306 (377-428)||(13365-13416)
[»] scaffold0152 (1 HSPs)
scaffold0152 (377-428)||(21911-21962)
[»] scaffold0019 (1 HSPs)
scaffold0019 (261-363)||(71755-71857)
[»] scaffold0475 (2 HSPs)
scaffold0475 (390-429)||(3280-3319)
scaffold0475 (262-334)||(3356-3428)
[»] scaffold0027 (1 HSPs)
scaffold0027 (346-429)||(46646-46729)
[»] scaffold0021 (1 HSPs)
scaffold0021 (339-429)||(130446-130536)
[»] scaffold0103 (1 HSPs)
scaffold0103 (344-413)||(51791-51860)
[»] scaffold0044 (1 HSPs)
scaffold0044 (270-366)||(53207-53303)
[»] scaffold0246 (1 HSPs)
scaffold0246 (377-420)||(19549-19592)
[»] scaffold0116 (1 HSPs)
scaffold0116 (382-429)||(9862-9909)
[»] scaffold0652 (1 HSPs)
scaffold0652 (334-429)||(462-557)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 259 - 435
Target Start/End: Original strand, 41961575 - 41961751
Alignment:
Q  259 atacctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacact 358  Q
    |||||||||||||||||||| |||||| ||||||||||||   |||||| |||||||||||||| ||||| |||||||| |||| ||||||||||||||     
T  41961575 atacctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacacc 41961674  T
Q  359 gaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    |||| |||  |       ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||    
T  41961675 gaataatgtgatattttcaaattattagttgtgacggcgtgtcagtgtctgtgtcgtgtccggtgtccgtgcttcat 41961751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 418
Target Start/End: Complemental strand, 14217021 - 14216867
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| |||||| |||||| |||||   |||||| |||||||||||||| || ||| ||||||| | || ||||||||||||||||||||    
T  14217021 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaatt 14216922  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    ||   |       |||||||||||||||||| ||||||||| |||||||||||||    
T  14216921 atatgatattttaaaattattagttgtgtcgacgtgtcagtgtccgtgtcgtgtc 14216867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 418
Target Start/End: Complemental strand, 14223150 - 14222996
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| |||||| |||||| |||||   |||||| |||||||||||||| || ||| ||||||| | || ||||||||||||||||||||    
T  14223150 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaatt 14223051  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    ||   |       |||||||||||||||||| ||||||||| |||||||||||||    
T  14223050 atatgatattttaaaattattagttgtgtcgacgtgtcagtgtccgtgtcgtgtc 14222996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 428
Target Start/End: Complemental strand, 55401194 - 55401040
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| ||||||||||||| ||||||| ||||||||||||||           |||| |||| ||||||||||||||| |||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtc-----------cgacaccgacacttgtaattacactaaat 55401106  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||  |       |||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  55401105 tatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgt 55401040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 401
Target Start/End: Complemental strand, 14209245 - 14209105
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| |||| | |||||| || ||  | ||||| |||||||||||||| || || |||||||| | || |||||||||||||||||    
T  14209245 acctatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactga 14209146  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtc 401  Q
    ||||||  |       |||||||||||||||||||||||||    
T  14209145 attatgtgattttttaaaattattagttgtgtcggcgtgtc 14209105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 28918062 - 28917962
Alignment:
Q  332 cacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgct 431  Q
    |||||| |||| |||||||||||||||||||||||  |       |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||    
T  28918062 cacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgtgct 28917963  T
Q  432 t 432  Q
    |    
T  28917962 t 28917962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 750593 - 750714
Alignment:
Q  309 acacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtca-gtatc 407  Q
    |||||||||||||| ||||| |||||||| |||| |||||||||| ||  ||||||||  |       |||||||||||||||||| ||||||| || ||    
T  750593 acacgtgtcgtgtccgataccgacacgacaccgacacttgtaattgcagcgaattatgtgatattttcaaattattagttgtgtcgccgtgtcaagtgtc 750692  T
Q  408 cgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||||||||||||||    
T  750693 cgtgtcgtgtccggtgtccgtg 750714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 10335329 - 10335381
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10335329 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 10335381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 429
Target Start/End: Original strand, 4990950 - 4991062
Alignment:
Q  317 cgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtg 416  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||||||  |       ||| ||||||  ||||||| |||||||| |||||||||||    
T  4990950 cgtgtctgataccaacacgacgccgacacttgtaattacactgaattatgtaattttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtg 4991049  T
Q  417 tccggtgtccgtg 429  Q
    | |||||||||||    
T  4991050 ttcggtgtccgtg 4991062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 401
Target Start/End: Complemental strand, 28812647 - 28812507
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||| |||| |||| | |||| |||||||||||| || ||||| ||| || |||||||||| ||  ||||||| |||| |||||||| ||||||||    
T  28812647 acctatgaggcacagacactcctcggattaggcgtgtcctgctgtcggacatgtatcgtgtctgacaccaacacgacaccgacacttgtaactacactga 28812548  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtc 401  Q
    ||||||  |       |||||||||||||||||||||||||    
T  28812547 attatgtgatttcttcaaattattagttgtgtcggcgtgtc 28812507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 404
Target Start/End: Original strand, 4987222 - 4987361
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    |||||| ||||||| | |||| ||||||||||||  ||||||| ||||||||||||||  | || |||||| | || | |||||||||||||||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaatta 4987321  T
Q  365 tgccannnnnnnaaattattagttgtgtcggcgtgtcagt 404  Q
    ||  |       |||||||||| |||||||||||||||||    
T  4987322 tgtgattttttcaaattattagctgtgtcggcgtgtcagt 4987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 14832206 - 14832081
Alignment:
Q  286 aattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattatta 385  Q
    |||||||||||||  ||||||| |||||||||||||| ||||| |||||||| | || ||||||||||||| ||| |||||  |       |||||||||    
T  14832206 aattaggcgtgtcccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgattttttcaaattatta 14832107  T
Q  386 gttgtgtcggcgtgtcagtatccgtg 411  Q
    | ||| |||||||||| |||||||||    
T  14832106 gctgtatcggcgtgtccgtatccgtg 14832081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 363
Target Start/End: Original strand, 34185052 - 34185152
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| ||||||||||||  ||||||| |||| |||| |||| || |  |||||||| |||| |||||||||||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattacactgaat 34185151  T
Q  363 t 363  Q
    |    
T  34185152 t 34185152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 429
Target Start/End: Original strand, 15999951 - 16000111
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||| ||||||||| | || | ||||||||||||  ||||||| |||||||||||||  |    || | |||| |||| ||||||| ||||||||||||    
T  15999951 tatgatgcacggacactccttggattaggcgtgtcccggtgtcggacacgtgtcgtgtacg----tgtc-cgacaccgacacttgtagttacactgaatt 16000045  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||  |       |||||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  16000046 atgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtg 16000111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 426
Target Start/End: Complemental strand, 14829816 - 14829657
Alignment:
Q  267 gaagcacggacatttctcgaattaggcgtgtcttggtgtcgaac-acgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattat 365  Q
    |||||||||||||| |||  ||||||||||||  |||||||||| || | |||||||  | || |||||||| |||| ||||||||||||  ||||||||    
T  14829816 gaagcacggacattcctcagattaggcgtgtcccggtgtcgaaccacatctcgtgtccaacaccgacacgacaccgacacttgtaattaccatgaattat 14829717  T
Q  366 gccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    |  |       |||||||||| ||||||||||||||||| || ||||| ||||||||||||    
T  14829716 gtgatttttc-aaattattagctgtgtcggcgtgtcagtgtctgtgtcatgtccggtgtcc 14829657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 429
Target Start/End: Original strand, 15796247 - 15796389
Alignment:
Q  287 attaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattag 386  Q
    |||||||||||   ||||| | |||||||| ||||| || ||  ||||||| |||| | ||||||||||||||||||||   |       |||||||||     
T  15796247 attaggcgtgttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaattatatgattttttcaaattattaa 15796346  T
Q  387 ttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
     ||||||||||||||| | ||||||||||||||||||||||||    
T  15796347 ctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 15796389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 49651714 - 49651818
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| |||||| |||||| |||||  ||||||| | | |||||||||| | | | |||||||| |||| ||||||||||||| |||    
T  49651714 acctatgaagcacggacacttctcggattaggtgtgtcccggtgtcggatatgtgtcgtgtccggt-ccgacacgacaccgacacttgtaattacagtga 49651812  T
Q  361 attatg 366  Q
    ||||||    
T  49651813 attatg 49651818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 420
Target Start/End: Original strand, 26492143 - 26492291
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    ||||||||||| |||||||| |||| ||||| ||||||||||||||  ||| ||||||||||           |||| ||||||||||||||||||||||    
T  26492143 acctatgaagcgcggacattcctcggattagacgtgtcttggtgtcagacatgtgtcgtgtc-----------cgacaccgatacttgtaattacactga 26492231  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    ||| |   |       |||||||||| | ||||||||||||||| |||||||||||||||    
T  26492232 attgtatgattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 410
Target Start/End: Complemental strand, 27505370 - 27505229
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| ||||||| ||||  ||||||| |||||||||||||      | |||||||| |||| ||||||||||||||| |||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgt------cagacacgacaccgacacttgtaattacacttaat 27505277  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgt 410  Q
    ||||  |       |||||||||| ||||||||| |||| ||||||||    
T  27505276 tatgtgatttttaaaaattattagctgtgtcggcttgtccgtatccgt 27505229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 429
Target Start/End: Original strand, 24204983 - 24205136
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtc-gtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    |||||||||||||| | ||||||||||||||||| |||||||| ||||| ||| ||||| ||      ||||||      |||| ||||||||||| |||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccga------cacgac------acttataattacactgtatt 24205070  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||| ||       |||||||||   |||||||||||||||| ||||||||||||||||||||||||    
T  24205071 atgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 24205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 428
Target Start/End: Original strand, 8587021 - 8587115
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||| |||| ||||||||||||||| |||||||  |       |||||| ||| ||||||||||||||||| |||||||| ||||||||||||||    
T  8587021 cgacaccgacacttgtaattacacttaattatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgt 8587115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 7171507 - 7171470
Alignment:
Q  388 tgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7171507 tgtgtcggcatgtcagtatccgtgtcgtgtccggtgtc 7171470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 3164068 - 3164120
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||| ||||||| |||| || | ||||||||||||||||||||||||    
T  3164068 aaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgtg 3164120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 8383273 - 8383221
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||  |||||||||||||| | |||||||||||||| |||||||||    
T  8383273 aaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtg 8383221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 20503519 - 20503454
Alignment:
Q  339 ccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagt 404  Q
    |||| ||||||||||||||||||||||| ||       |||||||| |||||||||||||||||||    
T  20503519 ccgacacttgtaattacactgaattatgtcattttttcaaattatttgttgtgtcggcgtgtcagt 20503454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 5440967 - 5441030
Alignment:
Q  263 ctatgaagcacggacatttctcgaattagg-cgtgtcttggtgtcgaacacgtgtcgtgtctga 325  Q
    |||||||||||||||| | ||||||||||| ||||||| ||||| | ||| |||||||||||||    
T  5440967 ctatgaagcacggacactcctcgaattaggccgtgtctcggtgttggacatgtgtcgtgtctga 5441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 3163971 - 3164021
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacg 313  Q
    |||||||||| ||||| | |||||||||||||||||| ||||||| |||||    
T  3163971 ctatgaagcatggacactcctcgaattaggcgtgtctcggtgtcggacacg 3164021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 10955011 - 10954932
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||| |||| |||||| ||||||||||||||||  |       |||||||||||||||||||||||||||| | ||||||    
T  10955011 cgacaccgacacttgtgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcgtgtc 10954932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 16789141 - 16789040
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | ||| ||||||| |||||  | ||| | ||| ||||| |||| || ||||||||||| || | |||| ||||||||||||||    
T  16789141 ctatgaagcacggacactcctcaaattaggtgtgtcccg-tgttggacatgtgtcatgtccgacactgacacgacaccaacacttataattacactgaat 16789043  T
Q  363 tat 365  Q
    |||    
T  16789042 tat 16789040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 17276846 - 17276792
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtc 317  Q
    |||||||||||||||| |||||| |||||| | |||| ||||||| |||||||||    
T  17276846 ctatgaagcacggacacttctcggattaggtgcgtctcggtgtcggacacgtgtc 17276792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 39002035 - 39001989
Alignment:
Q  390 tgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcatc 436  Q
    |||||| |||||||| | |||||||||| ||||||||||||||||||    
T  39002035 tgtcggtgtgtcagtgtacgtgtcgtgttcggtgtccgtgcttcatc 39001989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 40993272 - 40993334
Alignment:
Q  260 tacctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    ||||||||||||| ||||| | |||| ||||||||||||  ||||||| ||| ||||||||||    
T  40993272 tacctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtc 40993334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 35994780 - 35994829
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    |||||||||| ||||||||| ||||| | ||| |||||||||||||||||    
T  35994780 aaattattagctgtgtcggcttgtcattgtccatgtcgtgtccggtgtcc 35994829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 3610649 - 3610597
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||  ||||| ||||||||||| || |||||||||||||||| ||||    
T  3610649 aaattattaactgtgttggcgtgtcagtgtctgtgtcgtgtccggtgttcgtg 3610597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 3865599 - 3865635
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  3865599 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 3865635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 10318077 - 10318113
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  10318077 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 10318113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 435
Target Start/End: Complemental strand, 241724 - 241552
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| |||||| ||||||||||||  ||||||| |||||||||||||| || ||  ||||||| |||| |||  |||||||||| |||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaat 241625  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    ||||  |       |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  241624 tatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgcttcat 241552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 261 - 428
Target Start/End: Original strand, 8365446 - 8365613
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||| | | |||| ||||||||||||   |||||| |||||||||||||| ||||| |||||||| |||| |||||||||||||| ||    
T  8365446 acctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccga 8365545  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||  |       |||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  8365546 attatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgt 8365613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 263 - 429
Target Start/End: Complemental strand, 16766827 - 16766661
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||||||||||||||  ||| ||||||||||||  ||||||| |||||||| ||||| || || |||||||| |||| |||||||||||||||||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 16766728  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||  |       |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  16766727 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtg 16766661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 429
Target Start/End: Original strand, 9107299 - 9107465
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||||||||| || | |||| |||||| |||||  ||||||| ||||  || ||||| || || |||||||| |||| |||||||||||||||||||    
T  9107299 ctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 9107398  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    | ||  |       |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  9107399 tttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgtg 9107465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 435
Target Start/End: Complemental strand, 34595253 - 34595092
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| |||||| |||||  ||||||  ||||||||||||||           |||| |||| |||||||||||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtc-----------cgacaccgacacttgtaattacactgaat 34595165  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    ||||  |       |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  34595164 tatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgcttcat 34595092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 429
Target Start/End: Original strand, 8776906 - 8777068
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | |||| |||||| |||||| ||||||| ||||||||||||||      || | |||| || | |||||||||||||||||    
T  8776906 acctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgtcg-----tgtc-cgacaccaacacttgtaattacactga 8776999  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||| ||  |       |||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  8777000 attttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtg 8777068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 853902 - 853953
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  853902 aaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgt 853953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 429
Target Start/End: Original strand, 7977830 - 7977925
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||| |||| |||||||||||||||||||||||  |       |||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  7977830 cgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgtg 7977925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 10770668 - 10770774
Alignment:
Q  328 ctgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccg 427  Q
    |||||||||| |||| |||||||||||||||||||||||  |       |||||||||||||||| ||||||||||| ||| |||||||||| || ||||    
T  10770668 ctgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtcc-gtatccg 10770766  T
Q  428 tgcttcat 435  Q
    ||||||||    
T  10770767 tgcttcat 10770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 28715417 - 28715355
Alignment:
Q  260 tacctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    ||||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||    
T  28715417 tacctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtc 28715355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 420
Target Start/End: Complemental strand, 12696387 - 12696297
Alignment:
Q  330 gacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    |||||||| | || |||||||||||||||||||||||  |       |||||||||| ||||||||||||||||| |||||||||||||||    
T  12696387 gacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 12696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 7938132 - 7938080
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  7938132 aaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtg 7938080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 9522997 - 9522918
Alignment:
Q  287 attaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatg 366  Q
    ||||||||||||| ||||||| ||||||||||  || || || ||||| || |||| |||||||||||||||||||||||    
T  9522997 attaggcgtgtctcggtgtcggacacgtgtcggatccgacaccgacacaacaccgacacttgtaattacactgaattatg 9522918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 428
Target Start/End: Complemental strand, 31385048 - 31384885
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| | || | ||||||||||||  ||||| | ||||||||||||||  | ||| ||||||| | || ||||||||||||||||||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtccaacact-acacgacactgacacttgtaattacactgaatt 31384950  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||  |       |||||||||||||| ||  | || |||||||||| || ||| ||||||||||    
T  31384949 atgtgattttttcaaattattagttgtatcaacatgccagtatccgtatcatgttcggtgtccgt 31384885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 426557 - 426609
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||| ||||||    
T  426557 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtg 426609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 9027194 - 9027142
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||  |||||||||||||||| |||||||||||||||| |||||||    
T  9027194 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtg 9027142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 420
Target Start/End: Complemental strand, 16833362 - 16833281
Alignment:
Q  339 ccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    |||| |||||||||||||||||| ||||  |       |||||||||||||||||||||||||||| || ||||||||||||    
T  16833362 ccgacacttgtaattacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccg 16833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 3398635 - 3398584
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||| ||||||||||||||||| |||||||||||| || |||||||    
T  3398635 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgt 3398584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 5000670 - 5000721
Alignment:
Q  378 aattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||  |||||| |||||||||||||||||| |||||||||||||||    
T  5000670 aattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgtg 5000721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 429
Target Start/End: Complemental strand, 10294239 - 10294071
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    ||||||||||||| |||| | |||  |||||  ||||| | || ||| |||| ||||||||| || ||  ||||||| |||| || | |||||||| |||    
T  10294239 acctatgaagcacagacactcctcagattagctgtgtcctagtttcggacacatgtcgtgtccgacaccaacacgacaccgacacatataattacattga 10294140  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    | ||||| |       ||||||||||  || ||||| ||||||||||||||||||||||||||| ||||    
T  10294139 aatatgcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtcgtgtccggtgttcgtg 10294071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 429
Target Start/End: Complemental strand, 18367968 - 18367801
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | || | || |||||||||   |||||  ||| ||||||||||||| || |||||||| |||| || | |||||||||||     
T  18367968 acctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgc 18367869  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||| ||  |       |||  ||||| |||||||||||||| || ||| ||||||||||||||||||||    
T  18367868 attttgtgattttctaaaaaaattagctgtgtcggcgtgtc-gtgtccatgtcgtgtccggtgtccgtg 18367801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 24645600 - 24645529
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacac 334  Q
    ||||||||||| |||| |  ||| ||||| ||||||||||||||| ||||||||||||||||| || |||||    
T  24645600 ctatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccgacac 24645529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 435
Target Start/End: Original strand, 34073278 - 34073448
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | ||||||||||  |||||  |||||||  ||| ||||||||  || || |||||||| ||||  | | ||||||||||||||    
T  34073278 ctatgaagcacggacactcctcgaattagaggtgtcccggtgtcgg-cacatgtcgtgta-gacaccgacacgacaccgacccatataattacactgaat 34073375  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    ||||  |       ||||||||||   ||| ||| ||||||| |||||||||||||| |||||||||||||||    
T  34073376 tatgagattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtccagtgtccgtgcttcat 34073448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 3209397 - 3209346
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||| |||||||||||||| || || |||||||||||||||||||||    
T  3209397 aaattattagctgtgtcggcgtgtctgtgtc-gtgtcgtgtccggtgtccgtg 3209346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 4878066 - 4878003
Alignment:
Q  258 gatacctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    ||||||||||||||||||||| | |||| |||||||||||| | |||||| ||| ||||||||||    
T  4878066 gatacctatgaagcacggacactcctcggattaggcgtgtcct-gtgtcggacatgtgtcgtgtc 4878003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 429
Target Start/End: Original strand, 4118264 - 4118428
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    ||||| ||||||||||||||  ||||||||||| ||  |||| ||||||| | ||||| || |||||||| |  || | ||||||||||||| | |||||    
T  4118264 atgaatcacggacatttctcagattaggcgtgttttattgtcaaacacgtattgtgtccgacactgacacaaaaccaacacttgtaattacatttaatta 4118363  T
Q  365 tgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||  |       |||||||||  | | ||| ||||| | ||| ||||||||||||||||||||||    
T  4118364 tgtgattttttcaaattattaactatatcgtcgtgttaatatacgtgtcgtgtccggtgtccgtg 4118428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 17302647 - 17302584
Alignment:
Q  303 tgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatg 366  Q
    ||||| |||||||| |||||| |||||||||||||   || ||||||||||||| |||||||||    
T  17302647 tgtcggacacgtgttgtgtctaatactgacacgacaatgacacttgtaattacattgaattatg 17302584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 425
Target Start/End: Complemental strand, 9629513 - 9629351
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacac-gacgccgatacttgtaattacactgaa 361  Q
    |||||||||| ||||| | |||| ||||| |||||||  |||||| |||| ||| ||||| || || ||||| ||| |||| || | |||||||| ||||    
T  9629513 ctatgaagcatggacactcctcggattagacgtgtctcagtgtcggacacatgttgtgtccgacac-gacaccgacaccgacacatataattacattgaa 9629415  T
Q  362 ttatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    |||||  |       |||||||| |  |||||||||||||| |||||||||||||||| |||||    
T  9629414 ttatgtgattttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtccagtgtc 9629351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 413
Target Start/End: Original strand, 17841530 - 17841668
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| | |||| |||||||||||||  |||||| |||| |||||||||           |||| |||  ||||||||||||||| ||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtc-----------cgacaccgtcacttgtaattacactaaatt 17841618  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||  |       |||||||||| ||||||||||||||||| ||||||||    
T  17841619 atgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 17841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 29021034 - 29020972
Alignment:
Q  261 acctatgaagcacggacatttc-tcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||| ||||| ||  ||| |||||||||| || ||||||||||||||||||||||    
T  29021034 acctatgaagcatggacacttaatcggattaggcgtgcctcggtgtcgaacacgtgtcgtgtc 29020972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 9658895 - 9658854
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  9658895 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 9911523 - 9911560
Alignment:
Q  329 tgacacgacgccgatacttgtaattacactgaattatg 366  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  9911523 tgacacgacaccgacacttgtaattacactgaattatg 9911560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 17327588 - 17327649
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||||||| | |||| ||||||||||||   |||||  ||||||||||||||    
T  17327588 acctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtc 17327649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 1681774 - 1681726
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    |||||||||||||||||||||||| ||| |  ||||||||| |||||||    
T  1681774 aaattattagttgtgtcggcgtgttagtgtatgtgtcgtgttcggtgtc 1681726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 4877958 - 4877918
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgt 417  Q
    |||||||||| |||||||| |||||| ||||||||||||||    
T  4877958 aaattattagctgtgtcggtgtgtcactatccgtgtcgtgt 4877918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 5732565 - 5732605
Alignment:
Q  389 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  5732565 gtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgtg 5732605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 6389747 - 6389711
Alignment:
Q  389 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  6389747 gtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtc 6389711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 19044480 - 19044432
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||||||||||| |||||||||||||||| ||| |||||| | |||||||    
T  19044480 aaattattagtcgtgtcggcgtgtcagtgtccatgtcgtattcggtgtc 19044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 21395292 - 21395340
Alignment:
Q  318 gtgtctgatactgacacgacgccgatacttgtaattacactgaattatg 366  Q
    ||||| || ||||||||||| |||| ||||||||||||||| |||||||    
T  21395292 gtgtccgacactgacacgacaccgacacttgtaattacactaaattatg 21395340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 261 - 435
Target Start/End: Complemental strand, 40917881 - 40917709
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | |||| ||||||||||||  ||||||| ||||||||||||||  | || |||||||| |||| ||||||||||||||| |    
T  40917881 acctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaattacactta 40917782  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    ||| ||  |       |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  40917781 attgtg--attttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgtttcat 40917709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 429
Target Start/End: Complemental strand, 47989627 - 47989462
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| ||||||||||||  | ||||  ||| |||||||||| || || |||||||| |||| |||||||||||||||||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 47989528  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||  |       ||||||||| |||||||||||||||||| || |||||||||| ||| ||||||    
T  47989527 tatgtgatttttttaaattatta-ttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtatccgtg 47989462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 263 - 413
Target Start/End: Original strand, 18556385 - 18556535
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| |||||| ||||||||||||   |||||| | |||||||| |||||| || | |||||| || ||||||||||||||| | |||    
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtcgggtctgacaccgtcacgacaccaatacttgtaattacattaaat 18556484  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    ||||  |       |||||||||| ||||||||||||||||| ||||||||    
T  18556485 tatgtgatattttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 18556535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 429
Target Start/End: Original strand, 1486646 - 1486804
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    ||||||||| |||| | |||| ||||||||||||  ||||||| |||||||||||||| ||      |||||| |||| |||| ||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccga------cacgacaccgacacttataattacactgaatta 1486739  T
Q  365 tgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||  |       |||||||||| |||||| ||||||||||||||||||||| |||||| ||||||    
T  1486740 tgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccgtg 1486804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 401
Target Start/End: Complemental strand, 9828176 - 9828036
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | |||| ||||| ||||||  ||||||| ||||||||||||||||| || |||||||| |||| || |  |||||||||||    
T  9828176 acctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactga 9828077  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtc 401  Q
    ||||||  |       ||||||||||| |||||||||||||    
T  9828076 attatgtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 429
Target Start/End: Original strand, 6612124 - 6612266
Alignment:
Q  287 attaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattag 386  Q
    |||||||||||| |||||||| |||| | ||||||| || |  |||||||| |||| |||||||||||||||||||||||  |       |||||||||     
T  6612124 attaggcgtgtcctggtgtcggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattattaa 6612223  T
Q  387 ttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
     ||| ||||||||||| | ||||||||||||||||||| ||||    
T  6612224 ctgtatcggcgtgtcattgtccgtgtcgtgtccggtgttcgtg 6612266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 30173690 - 30173794
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaa 361  Q
    ||||||||||||||| |||  |||  ||||||||||| | | |||| ||| |||||||||| ||||| |||||||| |||| |||||||||||||||||     
T  30173690 cctatgaagcacggatattcgtcgggttaggcgtgtcctagagtcggacatgtgtcgtgtccgatacggacacgacaccgacacttgtaattacactgag 30173789  T
Q  362 ttatg 366  Q
    |||||    
T  30173790 ttatg 30173794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 31694638 - 31694742
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaa 361  Q
    ||||||||||||||||| | |||  |||||||||||   ||||||||| | |||| ||||| || || |||||||| |||| ||||||||||| ||||||    
T  31694638 cctatgaagcacggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaa 31694737  T
Q  362 ttatg 366  Q
    |||||    
T  31694738 ttatg 31694742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 48040505 - 48040556
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  48040505 aaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 48040556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 398808 - 398858
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccg 427  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  398808 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 10572632 - 10572683
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||||| |||||||||||||||| | | |||||||||||||||||||    
T  10572632 aaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgt 10572683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 10577783 - 10577830
Alignment:
Q  382 attagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||    
T  10577783 attagctgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtg 10577830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 421
Target Start/End: Original strand, 5376496 - 5376587
Alignment:
Q  330 gacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccgg 421  Q
    |||||||| |||| |||| ||||||||||||||||||  |       ||||||||||  |||||||||||| ||| ||||||||||||||||    
T  5376496 gacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgg 5376587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 402
Target Start/End: Original strand, 32461393 - 32461531
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| |||| | ||||||||||||   |||||  |||||||||||||| || || ||||| || || | ||||||||||||| | |||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac-acaccaacacttgtaattacattaaat 32461491  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtca 402  Q
    ||||  |       ||||||||||||||| ||||||||||    
T  32461492 tatgtgattttttcaaattattagttgtgccggcgtgtca 32461531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 40258874 - 40258944
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacac 334  Q
    ||||||||| ||||| | |||| |||||||||||| |||||||| ||| ||||||||||||| || |||||    
T  40258874 tatgaagcatggacactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacac 40258944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 426
Target Start/End: Complemental strand, 5944413 - 5944248
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||| ||| | |||| ||||||||| ||  ||||||| ||| |||| ||||| |  |  |||||||| |||| |||| ||||||||||||||    
T  5944413 ctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaat 5944314  T
Q  363 tatgcca--nnnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    ||||  |         |||||||||| |||| |||||||||||| || |||||||||||| |||||    
T  5944313 tatgtgattttttttcaaattattagctgtggcggcgtgtcagtgtctgtgtcgtgtccgatgtcc 5944248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 2896164 - 2896216
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||| ||||||||    
T  2896164 aaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgtg 2896216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 366
Target Start/End: Complemental strand, 6427595 - 6427491
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaa 361  Q
    ||||||||||||||||| |  ||  ||||||||||||  ||||||| |||||||||||||| ||  |  ||||||| | || ||||||| ||||| ||||    
T  6427595 cctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacgacactgacacttgtagttacattgaa 6427496  T
Q  362 ttatg 366  Q
    |||||    
T  6427495 ttatg 6427491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 13011259 - 13011311
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||| ||||||||| ||||||| | |||||||||| |||||||||||    
T  13011259 aaattattagctgtgtcggcatgtcagtgttcgtgtcgtgttcggtgtccgtg 13011311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 18471416 - 18471356
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgt 321  Q
    |||||||||| ||||||| | ||||||||||| |||| | ||||||| |||||||||||||    
T  18471416 acctatgaagtacggacactcctcgaattaggtgtgtttcggtgtcggacacgtgtcgtgt 18471356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 34298452 - 34298400
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||| ||||||| |||||||| ||||||||||||| ||||| ||||    
T  34298452 aaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtctggtgtacgtg 34298400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 420
Target Start/End: Original strand, 48450592 - 48450673
Alignment:
Q  339 ccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    |||| ||||||||||||||| |||||||  |       |||||||||| ||||| ||||||||||| |||||||||||||||    
T  48450592 ccgacacttgtaattacactaaattatgttattttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 1262900 - 1262849
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||| |||||||||||||| || | ||||||||||||||| |||||    
T  1262900 aaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccggtatccgt 1262849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 5927383 - 5927434
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||||  ||||  |||||||||| |||||||||||||||||||||||    
T  5927383 aaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgt 5927434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 366
Target Start/End: Complemental strand, 6332732 - 6332697
Alignment:
Q  331 acacgacgccgatacttgtaattacactgaattatg 366  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6332732 acacgacaccgatacttgtaattacactgaattatg 6332697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 21365989 - 21366036
Alignment:
Q  260 tacctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcg 307  Q
    ||||||||||||||||||| | |||| ||||||||||||| |||||||    
T  21365989 tacctatgaagcacggacactcctcggattaggcgtgtctcggtgtcg 21366036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 22515827 - 22515886
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||||| | |||| ||||||||||||| ||||||| | | ||||||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtc 22515886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 39130810 - 39130861
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||| | ||||| |||||||| ||||| |||||||||||||||||||    
T  39130810 aaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgt 39130861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 413
Target Start/End: Original strand, 46348323 - 46348462
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||||||||||||   |||| || |||||||||| ||||||| ||||||||||||||           |||| |||| ||||||||||||||| |||    
T  46348323 ctatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtc-----------cgacaccgacacttgtaattacactaaat 46348411  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||   |       |||||||||| ||||||||||||||||| ||||||||    
T  46348412 tatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 46348462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 14359564 - 14359621
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    |||||||||| |||||||||||||| || || ||||||||||| || ||||||||||||    
T  14359564 aaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtcc-gtatccgtgcttcat 14359621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 24577182 - 24577253
Alignment:
Q  330 gacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtc 401  Q
    |||||||| |||| |||||||||||||||||||||||  |       ||||||||||||||||| |||||||    
T  24577182 gacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcagcgtgtc 24577253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 16297223 - 16297280
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||| | |||| |||||||||||| |||||||| ||||  ||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacacacgtcgtgtc 16297280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 17408797 - 17408756
Alignment:
Q  287 attaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatac 328  Q
    |||||| || ||||||||||| ||||||||||||||||||||    
T  17408797 attaggtgtatcttggtgtcggacacgtgtcgtgtctgatac 17408756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Original strand, 18190163 - 18190192
Alignment:
Q  397 gtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    ||||||||||||||||||||||||||||||    
T  18190163 gtgtcagtatccgtgtcgtgtccggtgtcc 18190192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 5898204 - 5898268
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctga 325  Q
    |||||| ||||||||||| | |||| ||||| ||||||  ||||| | |||||||||||||||||    
T  5898204 acctataaagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctga 5898268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 34315722 - 34315686
Alignment:
Q  383 ttagttgtgtcggcgtgtcagtatccgtgtcgtgtcc 419  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  34315722 ttagctgtgtcggcatgtcagtatccgtgtcgtgtcc 34315686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 37598848 - 37598816
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccg 409  Q
    |||||||||||||||||||||||||||| ||||    
T  37598848 aaattattagttgtgtcggcgtgtcagtgtccg 37598816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 37598951 - 37598891
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    ||||||||||||||||| | |||| ||||||||||||    ||||| ||||||||||||||    
T  37598951 cctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtc 37598891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 263 - 428
Target Start/End: Complemental strand, 24339772 - 24339607
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||||||||| || | |||| ||||||||||||  ||||||| | |||||||||||| || || |||||||| |||| |||||||||||||||||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 24339673  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||  |       |||||||||| ||||||||||||||| | ||| |||||||||||||||||||    
T  24339672 tatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgt 24339607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 366
Target Start/End: Original strand, 27229244 - 27229343
Alignment:
Q  267 gaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatg 366  Q
    |||||| ||||||| ||||||||||||||||| | ||||||||||||| |||||||||| | ||||||||| ||||||||| |||||||||| |||||||    
T  27229244 gaagcatggacattcctcgaattaggcgtgtcctagtgtcgaacacgtatcgtgtctgacagtgacacgacaccgatacttataattacactaaattatg 27229343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 428
Target Start/End: Complemental strand, 27945105 - 27945006
Alignment:
Q  329 tgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||| |||| |||||||||||||||||||||||  |       ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  27945105 tgacacgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 27945006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 7438838 - 7438733
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | || |||||||||||||| | |||||| ||| ||||||||| ||| || |||| ||| |||| ||||||||||||| |||    
T  7438838 acctatgaagcacggacactccttgaattaggcgtgtcctagtgtcgcacatgtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattga 7438739  T
Q  361 attatg 366  Q
    ||||||    
T  7438738 attatg 7438733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 425
Target Start/End: Original strand, 5409769 - 5409927
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | |||| ||||||||||||  ||||||| |||||||||||||      | |||||||| |||| |||||||||| ||||||    
T  5409769 acctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt------ccgacacgacaccgacacttgtaattgcactga 5409862  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||||||  |       |||||||||| ||| || |||||||||| ||| |||||| |||||||||    
T  5409863 attatgtgattttttcaaattattagctgtatcagcgtgtcagtgtccatgtcgtatccggtgtc 5409927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 263 - 427
Target Start/End: Original strand, 43027404 - 43027562
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| |  ||| ||||||||||||  ||||||| |||||||||||||      |||||||||| |||| ||||||| |||||||| ||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgt------ctgacacgacaccgacacttgtatttacactgcat 43027497  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccg 427  Q
    ||||  |       |||||||||| || |||| ||||||||| |||||||||||||| |||||||    
T  43027498 tatgtgattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccg 43027562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 435
Target Start/End: Complemental strand, 43250118 - 43249951
Alignment:
Q  268 aagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtc-gtgtctgatactgacac-gacgccgatacttgtaattacactgaattat 365  Q
    ||||||||||| | ||||||||||||||||| |||||||| ||||| ||| ||||| ||  | ||||| ||| | || |||| ||||||||||| |||||    
T  43250118 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacgc-gacaccgacac-gacacttataattacactgtattat 43250021  T
Q  366 gccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    | ||       |||||||||   |||||||||||||||| |||||||| |||||||||||||||||||||    
T  43250020 gtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgtgcttcat 43249951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 598327 - 598256
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacac 334  Q
    |||||||||||||||| |||||| ||||||||||||  ||||||| ||||||||||||||||| || |||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 404
Target Start/End: Original strand, 9408265 - 9408404
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    ||||||||||||||||  ||| ||||||||||| ||||||||| | |  | |||||||||| || || ||||| |||| ||||||||||||||| |||||    
T  9408265 atgaagcacggacattcttcggattaggcgtgttttggtgtcggatatatatcgtgtctgacaccgatacgacaccgacacttgtaattacactaaatta 9408364  T
Q  365 tgccannnnnnnaaattattagttgtgtcggcgtgtcagt 404  Q
    ||  |       ||||||||| ||||||||| ||||||||    
T  9408365 tgtgattttttcaaattattaattgtgtcggtgtgtcagt 9408404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 420
Target Start/End: Complemental strand, 24105737 - 24105651
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    |||| |||| ||||||||||||||||||| |||| |       |||||||||| ||||||||||||||||| |||||||||||||||    
T  24105737 cgactccgacacttgtaattacactgaatcatgcaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 24105651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 26033392 - 26033493
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    ||||| |||||||| | |||| |||||| |||||  ||| ||| ||||||||| ||||||| || |||||||  |||| |||||||||||||||||||||    
T  26033392 atgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaatta 26033491  T
Q  365 tg 366  Q
    ||    
T  26033492 tg 26033493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 13770754 - 13770657
Alignment:
Q  330 gacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccg 427  Q
    ||||||||  ||| |||||||||||||||||||||||  |       |||||||||| ||||||||||| ||||| ||||||||||||||| ||||||    
T  13770754 gacacgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtcggcgtatcagtgtccgtgtcgtgtccgatgtccg 13770657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 15680929 - 15680869
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    ||||||||||||||||| | |||||||||| ||||||| ||||||| ||||||||||||||    
T  15680929 cctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtc 15680869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 408
Target Start/End: Original strand, 11665370 - 11665514
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||||| |||| |||||  |||| | ||||||| |||||||||||||  || || |||| |||  ||| |||| |||||| ||||||||    
T  11665370 tatgaagcacggacattcctcgtattagatgtgtttcggtgtcggacacgtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaatt 11665469  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatcc 408  Q
    |||  |       ||||||||||||||||| |||||||| |||||    
T  11665470 atgtgattttttcaaattattagttgtgtcagcgtgtcaatatcc 11665514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 21880271 - 21880212
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||||| |||||| |||||||||||| |||||||| ||| ||||||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtc 21880212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 11722153 - 11722197
Alignment:
Q  389 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttc 433  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  11722153 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgcttc 11722197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 13557787 - 13557839
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||||| ||||||||||||||| || ||||| |||||||||||||||    
T  13557787 aaattattagttttgtcggcgtgtcagtgtctgtgtcatgtccggtgtccgtg 13557839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 2334379 - 2334277
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||| |||||||| | |||| ||||| ||||| |  |||||| ||| |||||||||| || || |||||||| |||| ||||||||||||||| |||    
T  2334379 ctatgaaacacggacactcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtccgacac-gacacgacaccgacacttgtaattacactaaat 2334281  T
Q  363 tatg 366  Q
    ||||    
T  2334280 tatg 2334277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 6028731 - 6028652
Alignment:
Q  287 attaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatg 366  Q
    |||||||||||||  ||||||||| ||||||||||  || ||||||||||| |||| | ||||||||||| | |||||||    
T  6028731 attaggcgtgtctcagtgtcgaactcgtgtcgtgttcgacactgacacgacaccgacatttgtaattacattaaattatg 6028652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 17852119 - 17852060
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||||| | ||||||||||| |||||| ||||||| ||||||||| ||||    
T  17852119 ctatgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgtcatgtc 17852060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 25822739 - 25822647
Alignment:
Q  309 acacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtc 401  Q
    |||||||||||||| ||||| || ||||| |||| |||||||||||||||||||| ||          |||||||||||||||||||||||||    
T  25822739 acacgtgtcgtgtccgataccgatacgacaccgacacttgtaattacactgaattgtgattttttttcaaattattagttgtgtcggcgtgtc 25822647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 26329357 - 26329477
Alignment:
Q  309 acacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatcc 408  Q
    ||||||||||||||||| || ||||||||||||| || | ||||||||||||||| ||          |||||||||    ||||||||||||||| ||     
T  26329357 acacgtgtcgtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtct 26329456  T
Q  409 gtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||| |||||||||    
T  26329457 gtgtcgtgtccagtgtccgtg 26329477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 9778626 - 9778527
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | || | ||||||||||||  ||||||| |||||||| ||||      | |||||||| |||| ||||||||||| |||||    
T  9778626 acctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgt------ccgacacgacaccgacacttgtaattatactga 9778533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 29763129 - 29763187
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgt 321  Q
    |||||||||||||||| | |||| |||||||||||| || ||||| |||||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacgtgtcgtgt 29763187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 25481951 - 25481866
Alignment:
Q  344 acttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||||||||||||||||  |       |||||||||| ||||||||||||||| | ||| ||| ||||||| ||||||||    
T  25481951 acttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccatgttgtgtccgatgtccgtg 25481866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 18213082 - 18213129
Alignment:
Q  382 attagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||| ||||    
T  18213082 attagttgtgtcggcgtatcagtgtccgtgtcgtgtctggtgttcgtg 18213129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 21864927 - 21864868
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    ||||||||||| |||| | |||||||||| ||||||  ||||||| ||||||||||||||    
T  21864927 ctatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtc 21864868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 4017849 - 4017895
Alignment:
Q  389 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    ||||||||||||| || |||||||||||||| ||||| |||||||||    
T  4017849 gtgtcggcgtgtcggtgtccgtgtcgtgtccagtgtctgtgcttcat 4017895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 1433458 - 1433417
Alignment:
Q  389 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgc 430  Q
    |||||||||||||| | |||||||||||| ||||||||||||    
T  1433458 gtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtgc 1433417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 2034457 - 2034416
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    ||||||||||| |||||| ||||| |||||||||||||||||    
T  2034457 aaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtc 2034416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 420
Target Start/End: Original strand, 7973168 - 7973214
Alignment:
Q  377 aaattattagttgtgtcggcg---tgtcagtatccgtgtcgtgtccg 420  Q
    ||||||||| |||||||||||   |||||||||||||||||||||||    
T  7973168 aaattattaattgtgtcggcggcatgtcagtatccgtgtcgtgtccg 7973214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 429
Target Start/End: Complemental strand, 9778504 - 9778472
Alignment:
Q  397 gtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||| ||||||||||||||||||||||||    
T  9778504 gtgtcagtgtccgtgtcgtgtccggtgtccgtg 9778472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 10230130 - 10230166
Alignment:
Q  399 gtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    |||||| |||||||| |||||||||||||||||||||    
T  10230130 gtcagtgtccgtgtcatgtccggtgtccgtgcttcat 10230166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 11272569 - 11272617
Alignment:
Q  317 cgtgtctgatactgacacgacgccgatacttgtaattacactgaattat 365  Q
    |||||| || || |||||||| |||| ||||||||||||||||||||||    
T  11272569 cgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 13585323 - 13585267
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttc 433  Q
    |||||||||| ||||||||| ||||||| ||  | ||||||| ||||||||||||||    
T  13585323 aaattattagctgtgtcggcatgtcagtgtcaatatcgtgtctggtgtccgtgcttc 13585267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 18039062 - 18039026
Alignment:
Q  330 gacacgacgccgatacttgtaattacactgaattatg 366  Q
    |||||||| |||| |||||||||||||||||||||||    
T  18039062 gacacgacaccgacacttgtaattacactgaattatg 18039026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 21141025 - 21141077
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||| |||||| |||||| |  |||||||||||| |||||||||||    
T  21141025 aaattattagtggtgtcgacgtgtcggcgtccgtgtcgtgtacggtgtccgtg 21141077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 26733320 - 26733272
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||||||||||  |||||| ||||||||| ||||||||||||| ||||||    
T  26733320 aaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtctggtgtc 26733272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 263 - 425
Target Start/End: Complemental strand, 22652106 - 22651944
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| ||||| ||||||  ||||||| |||| ||||||||| || || |||||||| |||| ||||||||||| | |||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaat 22652007  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||||  |       |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  22652006 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 22651944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 426
Target Start/End: Original strand, 29510231 - 29510396
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | |||| |||||| |||||  ||||||| ||||| |||||||| || || ||||| || |||| ||||||||||| |||||    
T  29510231 acctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactga 29510330  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    ||| ||  |       |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  29510331 attttgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 410
Target Start/End: Original strand, 15816058 - 15816205
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| |||||| ||||||||||||  ||||||| |  ||||||||||| || ||  ||||||| |||| |||| |||||||||| |||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaat 15816157  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgt 410  Q
    ||||  |       |||||||||||||||||||||||||||| |||||    
T  15816158 tatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgt 15816205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 2572031 - 2572151
Alignment:
Q  309 acacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatcc 408  Q
    |||||||||||||| || || |||||||| |||| ||||||||||||||| |||||||  |       |||||||||| ||||||| |||||| ||||||    
T  2572031 acacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatcc 2572130  T
Q  409 gtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||| |||||||||    
T  2572131 gtgtcgtgtccagtgtccgtg 2572151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 401
Target Start/End: Original strand, 29447040 - 29447177
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| | || | |||||||||||| |||||||  |||| ||||||||| || || |||| ||| |||| ||||||| ||||| ||||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaatt 29447139  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtc 401  Q
    |||  |       |||||||||||||||||| ||||||    
T  29447140 atgtgattttctcaaattattagttgtgtcgacgtgtc 29447177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 21465542 - 21465440
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | ||| |||||||||| ||   |||| | |||||||||||||| || ||||||||||| || | |||||||||||||  ||||    
T  21465542 ctatgaagcacggacactcctcaaattaggcgtatccctgtgttggacacgtgtcgtgtccgacactgacacgacaccaacacttgtaattacatcgaat 21465443  T
Q  363 tat 365  Q
    |||    
T  21465442 tat 21465440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 926831 - 926883
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||||||    
T  926831 aaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 926883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 429
Target Start/End: Original strand, 22197669 - 22197837
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacac-gacgccgatacttgtaattacactg 359  Q
    |||||| ||||||||||| | |||  ||||||||||    ||||||| ||||||||| |||| || || ||||| ||| | || |||||||||||||||     
T  22197669 acctataaagcacggacactcctcagattaggcgtgatccggtgtcggacacgtgtcatgtccgacac-gacactgacactgacacttgtaattacacta 22197767  T
Q  360 aattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||  |       |||||||||| ||||| ||||||| ||| || |||||||||||||||||||||    
T  22197768 aattatgtgaatttttcaaattattagctgtgttggcgtgttagtgtctgtgtcgtgtccggtgtccgtg 22197837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 428
Target Start/End: Original strand, 25192352 - 25192441
Alignment:
Q  339 ccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||| |||| |||||| ||||||||||| ||       |||||||||| ||||||||||||||||| ||||| ||||||||| |||||||    
T  25192352 ccgacacttataattatactgaattatgtcactttttcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgt 25192441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 413
Target Start/End: Original strand, 36450694 - 36450833
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||||||| |||| | |||| |||||||||||| |||||||| ||||| ||||||||           |||| || | |||||||||||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtc-----------cgacacctacacttgtaattacactgaat 36450782  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    | ||  |       |||||||||||||||||||||||||||| ||||||||    
T  36450783 tctgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 36450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 14134818 - 14134760
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgt 321  Q
    ||||||| |||||||| | ||||||||||||||||| ||||| || |||||||||||||    
T  14134818 ctatgaaacacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgt 14134760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 18170525 - 18170583
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    ||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||||| ||||    
T  18170525 aaatttttaattgtgtcggcgtgtcagtgtccgtgtcgtgaccggtatccgtgcatcat 18170583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 18634093 - 18634151
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    ||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||||| ||||    
T  18634093 aaatttttaattgtgtcggcgtgtcagtgtccgtgtcgtgaccggtatccgtgcatcat 18634151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 5813713 - 5813652
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    ||||| |||||||||||| | ||| |||||||||||||  ||||||| ||||||||||||||    
T  5813713 acctacgaagcacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtc 5813652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 420
Target Start/End: Complemental strand, 8343447 - 8343289
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaa 361  Q
    |||||||||||| |||| |  ||| ||||||||||||  ||||||| |||||||||||||| || ||    ||||| | || ||||||||||||||| ||    
T  8343447 cctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacacgtgtacgacactgacacttgtaattacactaaa 8343348  T
Q  362 ttatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    |||||  |       |||||||||| | |||||| ||||| || || ||||||||||||    
T  8343347 ttatgtgattttttcaaattattagctatgtcggtgtgtcggtgtcagtgtcgtgtccg 8343289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 13437007 - 13437056
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    |||||||||| ||||||||||||||||| ||| |||| ||||||||||||    
T  13437007 aaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtcc 13437056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 18407840 - 18407779
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||||||| | ||| ||||||||||||| | |||||| ||| ||||||||||    
T  18407840 acctatgaagcacggacactcctccaattaggcgtgtcctagtgtcggacatgtgtcgtgtc 18407779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 27213563 - 27213518
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggt 422  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||||    
T  27213563 aaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccggt 27213518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 429
Target Start/End: Complemental strand, 44067644 - 44067480
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtc-gtgtctgatactgaca-cgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||| | ||||||||||||||||| |||||||| |||||  || ||||| || || |||| ||||  ||| |||| ||||||||||| ||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacac-gacaccgac-acgacacttataattacactgtat 44067547  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||| ||       |||||||||   |||||||||||||||| || |||| ||||| ||||||||||    
T  44067546 tatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgtg 44067480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 428
Target Start/End: Original strand, 11927015 - 11927180
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| |  ||| ||||||||||||| | ||| | | || |||||||| ||| ||  ||||||| |||| || | ||||||||||||||    
T  11927015 ctatgaagcacggacactcatcggattaggcgtgtctcgatgttggatacatgtcgtgtatgacaccaacacgacaccgacacatataattacactgaat 11927114  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||  |       |||||||||   |||||||||| | || |||||||||||||  |||||||||    
T  11927115 tatgtgattttatcaaattattaacagtgtcggcgtattagcatccgtgtcgtgtttggtgtccgt 11927180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 420
Target Start/End: Complemental strand, 28745628 - 28745471
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | || ||||||| | ||||| |||| || ||| |||||||||| || || ||||||||  ||| | ||||| ||||| |||||    
T  28745628 ctatgaagcacggacactccttgaattagacttgtctcggtgacggacaggtgtcgtgtccgacaccgacacgacatcgacatttgtagttacattgaat 28745529  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    ||||  |       ||||||||||  ||||||  || ||| |||||||||||||||||    
T  28745528 tatgtgaatttttcaaattattagcagtgtcgatgtatcattatccgtgtcgtgtccg 28745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 3658271 - 3658228
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcg 307  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  3658271 tatgaagcacggacactcctcgaattaggcgtgtcttgatgtcg 3658228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 4673468 - 4673519
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||  ||||||||||||||||| || |||||||||||| |||||||    
T  4673468 aaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgt 4673519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 29447574 - 29447471
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||  ||||| | ||||  ||||||| |||| |||||||||||| || |||||||| || | || | |||||||||| |||    
T  29447574 ctatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattacacttaat 29447475  T
Q  363 tatg 366  Q
    ||||    
T  29447474 tatg 29447471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 13397672 - 13397626
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcg 307  Q
    |||||||||||||||||| | || ||||||||||||||| |||||||    
T  13397672 acctatgaagcacggacactccttgaattaggcgtgtctcggtgtcg 13397626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 3677802 - 3677761
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    ||||||||| ||||||||  ||||||||||||||||||||||    
T  3677802 aaattattaattgtgtcgatgtgtcagtatccgtgtcgtgtc 3677761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 22204655 - 22204622
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgt 410  Q
    |||||||||||||||||||||||||||| |||||    
T  22204655 aaattattagttgtgtcggcgtgtcagtgtccgt 22204622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 24196640 - 24196688
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||||||||||||||||||||||||| || ||||| |||| | |||||||    
T  24196640 aaattattagttgtgtcggcgtgtcggtgtccgtatcgtattcggtgtc 24196688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 24858025 - 24857973
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||  ||||||||||||||  | ||||||||||||||||||| ||||    
T  24858025 aaattattaactgtgtcggcgtgtccatgtccgtgtcgtgtccggtgttcgtg 24857973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 429
Target Start/End: Complemental strand, 21542159 - 21541994
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||| ||||||||||| || | ||| ||||||||  ||||||| |||||||||||||| || || |||||||| |||| ||||||||||||||||||||    
T  21542159 tatgatgcacggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 21542060  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||  |       |||||||||||||||||||| ||||| | || |||||||||| ||||||||||    
T  21542059 atgttatctttttaaattattagttgtgtcggcatgtcaatgtctgtgtcgtgtctggtgtccgtg 21541994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 429
Target Start/End: Complemental strand, 21522856 - 21522714
Alignment:
Q  287 attaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattag 386  Q
    ||||||||||||  |||| || |||||||||||||| || || |||||||| |||| | |||||||||||||||||||||  |       ||||||||||    
T  21522856 attaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattag 21522757  T
Q  387 ttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
     ||||||||||||||||| |||||||||||||||||| |||||    
T  21522756 ctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtg 21522714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 429
Target Start/End: Complemental strand, 21533422 - 21533280
Alignment:
Q  287 attaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattag 386  Q
    ||||||||||||  |||| || |||||||||||||| || || |||||||| |||| | |||||||||||||||||||||  |       ||||||||||    
T  21533422 attaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattag 21533323  T
Q  387 ttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
     ||||||||||||||||| |||||||||||||||||| |||||    
T  21533322 ctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtg 21533280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 410
Target Start/End: Complemental strand, 39698671 - 39698524
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| ||||||||||||| ||||||| | || ||||||||| || || |||||||| | || |||||||||||||||||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaat 39698572  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgt 410  Q
    ||||  |       |||||||||| |||||| |||||||||| |||||    
T  39698571 tatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgt 39698524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 267 - 396
Target Start/End: Complemental strand, 30183675 - 30183546
Alignment:
Q  267 gaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatg 366  Q
    ||||||| |||| |||||||||||||||||||   |||||| ||||||||||||||||||||  ||||||| |||| ||||||||||| || |||| |||    
T  30183675 gaagcacagacacttctcgaattaggcgtgtcccagtgtcggacacgtgtcgtgtctgataccaacacgacaccgacacttgtaattaaaccgaataatg 30183576  T
Q  367 ccannnnnnnaaattattagttgtgtcggc 396  Q
      |       ||||||||||||||||||||    
T  30183575 tgatattttcaaattattagttgtgtcggc 30183546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 4105273 - 4105215
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  4105273 aaattattagttatgtcggcgtgtcagtatccgtgtcatgtccggtatccgtgcttcat 4105215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 29229103 - 29228933
Alignment:
Q  17 cacaaaaatgggcgtgacataagcgcataaaacatcatgtgcag---------nnnnnnnnnnaaaaactacataattatcttttgtcnnnnnnncaata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||                   |||||  ||||||||||||||||||        ||||    
T  29229103 cacaaaaatgggcgtgacataagcgcataaaacatcatgtgcagttttttttttttaaaaaaaaaaaagaacataattatcttttgtcaaaaaaataata 29229004  T
Q  108 aatacataattatctgaacccttaattatttattttctattttggcacaatctgaacccttaatttaacttgt 180  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||| | | |||||||||||||||||||||||    
T  29229003 aatacataattatctgaaccctcaatta-ttatttt-tattttggtatactctgaacccttaatttaacttgt 29228933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 425
Target Start/End: Original strand, 36642689 - 36642853
Alignment:
Q  260 tacctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactg 359  Q
    |||||| ||||||| |||| | ||| |||||||||||||  | ||||| |||||||||||||| || ||  ||| ||| |||| |||| || |||||||     
T  36642689 tacctacgaagcaccgacactcctccaattaggcgtgtcccg-tgtcggacacgtgtcgtgtccgacaccaacatgacaccgacacttatatttacacta 36642787  T
Q  360 aattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    || |||| ||       |||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  36642788 aaatatgtcactttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 36642853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 16304366 - 16304437
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacac 334  Q
    |||||||||||||||||| |||| ||||| ||||||| |||||||  ||||||||||||| |||||||||||    
T  16304366 ctatgaagcacggacattcctcggattagacgtgtctcggtgtcgggcacgtgtcgtgtccgatactgacac 16304437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 22013430 - 22013379
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  22013430 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 22013379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 425
Target Start/End: Original strand, 21191056 - 21191147
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    |||| |||| |||||||||||||||||||||||  |       |||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  21191056 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccggtgtc 21191147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 6247681 - 6247588
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccg 427  Q
    |||| |||| |||||||||||||||||||||||  |       |||||||||| ||||||||||||||||| | ||| ||||||||||||||||    
T  6247681 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccg 6247588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 15382493 - 15382441
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  15382493 aaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 15382441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 425
Target Start/End: Complemental strand, 19579829 - 19579669
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    ||||| |||| ||| | |||| ||||||||||||  |||||   |||  ||||||||| || ||||||||||| |||| |||||||||| |||| |||||    
T  19579829 atgaaacacgtacactcctcggattaggcgtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaatta 19579730  T
Q  365 tgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||  |       |||||||||| ||||||||||| ||||| ||||||| || |||||||||    
T  19579729 tgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgttgtatccggtgtc 19579669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 30098456 - 30098353
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||||| |||| |||||| ||||| |||||||  |||||||||||||| || |||||| |||  |||| |  | |||||||| |||||    
T  30098456 ctatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaat 30098357  T
Q  363 tatg 366  Q
    ||||    
T  30098356 tatg 30098353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 13287395 - 13287494
Alignment:
Q  330 gacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||| |||| ||||||| |||||||||||||||  |       |||||||||  ||||||| ||||| ||| ||||||||||||||||||||||||    
T  13287395 gacacgacaccgacacttgtagttacactgaattatgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtg 13287494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 21137692 - 21137647
Alignment:
Q  390 tgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  21137692 tgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgcttcat 21137647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 429
Target Start/End: Complemental strand, 6401627 - 6401462
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| | || | || |||||| ||   |||||  |||||||||||||| || ||||||||||| |||| || | ||||||||||| |||    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtatt 6401528  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
     ||  |       |||   ||||||||||||||||||| || ||||||||| ||||||||||||||    
T  6401527 ttgtgattttctaaaaaatttagttgtgtcggcgtgtcggtgtccgtgtcgcgtccggtgtccgtg 6401462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 7677835 - 7677732
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||||||| |||  | |||| ||||||||||||  ||||||| ||| ||| |||||| || || |||||||| |||| |||| ||||| ||||||||    
T  7677835 ctatgaagcaccgactctcctcggattaggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgacacgacaccgacacttctaattgcactgaat 7677736  T
Q  363 tatg 366  Q
    ||||    
T  7677735 tatg 7677732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 19820437 - 19820488
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||||  ||||||| |||||||| |||||||||||||||||||||||    
T  19820437 aaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgt 19820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 423
Target Start/End: Original strand, 24906306 - 24906390
Alignment:
Q  339 ccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtg 423  Q
    |||| ||||||||||||||||||||||| ||       |||||||||  ||||| ||||||||||| | ||||||||||||||||    
T  24906306 ccgacacttgtaattacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgttcgtgtcgtgtccggtg 24906390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 30135329 - 30135286
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  30135329 aaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtccg 30135286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 429
Target Start/End: Complemental strand, 41995486 - 41995435
Alignment:
Q  378 aattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||||||||||||||||||| || ||||||| ||| |||||||||    
T  41995486 aattattagttgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccgtg 41995435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 6072357 - 6072399
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtcc 419  Q
    |||||||||||| ||||||||||||||||||||| ||||||||    
T  6072357 aaattattagttatgtcggcgtgtcagtatccgtatcgtgtcc 6072399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 429
Target Start/End: Original strand, 6326297 - 6326392
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||| || |||||||||||||||||||||||  |       |||||| |||   ||||||||||||||| ||||||||||||||||| ||||||    
T  6326297 cgacgctgacacttgtaattacactgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtg 6326392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 22299523 - 22299572
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    |||||||||| |||||||| |||||| |||||||||||| ||||||||||    
T  22299523 aaattattagctgtgtcggtgtgtcaatatccgtgtcgtatccggtgtcc 22299572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 43565002 - 43564941
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||||||| |||||| ||||||||||||  || |||| |||| |||||||||    
T  43565002 acctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtc 43564941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 19552586 - 19552638
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||  ||||||||||||||||| |||||||||||| ||||| |||||    
T  19552586 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgttcggtggccgtg 19552638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 25888338 - 25888390
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||| |||| || ||||| ||||||||||||||||| |||||||||    
T  25888338 aaattattagtagtgttggtgtgtctgtatccgtgtcgtgtcctgtgtccgtg 25888390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 27932355 - 27932295
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    ||||||||||||  ||| | ||||||||||||||||| |||||||  ||||||||||||||    
T  27932355 cctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtc 27932295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 429
Target Start/End: Original strand, 37328826 - 37328939
Alignment:
Q  316 tcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgt 415  Q
    ||||||| || || |||||||| |||| || ||||||||||||||||| ||  |       |||||||| | |||||||| || ||||| ||||||||||    
T  37328826 tcgtgtccgacaccgacacgacaccgacacatgtaattacactgaattttgtgatttttacaaattatttgctgtgtcggtgtatcagtgtccgtgtcgt 37328925  T
Q  416 gtccggtgtccgtg 429  Q
    || |||||||||||    
T  37328926 gttcggtgtccgtg 37328939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 42469225 - 42469185
Alignment:
Q  389 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  42469225 gtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtg 42469185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 297
Target Start/End: Original strand, 6326252 - 6326287
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgt 297  Q
    ||||||||||||||||| ||||||||||||||||||    
T  6326252 cctatgaagcacggacacttctcgaattaggcgtgt 6326287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 6770559 - 6770508
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||||||||||| | |||||||| |||||||| ||| ||||||||||    
T  6770559 aaattattagttgtgtcagtgtgtcagtgtccgtgtcatgttcggtgtccgt 6770508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 42893479 - 42893408
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacac 334  Q
    |||||||||| ||||| | |||  |||||||||||| |||||||| |||||||| |||||||| || |||||    
T  42893479 ctatgaagcatggacactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacaccgacac 42893408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 2437030 - 2436980
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacg 313  Q
    |||||||||||| ||| | |||| ||||||||||||||||||||| |||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacacg 2436980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 11686070 - 11685965
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | |||  ||||| |||| |||||| | | |||||||||||||| || || || ||||| |||| || | |||||||||| |    
T  11686070 acctatgaagcacggacactcctccgattagccgtgccttggttttggacacgtgtcgtgtccgacaccga-acgacaccgacacatataattacactaa 11685972  T
Q  361 attatgc 367  Q
    |||||||    
T  11685971 attatgc 11685965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 14674323 - 14674249
Alignment:
Q  339 ccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||| ||||||||||||||| |||||||  |       |||||||||| ||||||||||||||||| ||||||||    
T  14674323 ccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 14674249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 15410491 - 15410532
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  15410491 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 22423855 - 22423904
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    ||||||||||| ||||| | ||||||||||||||||||||| || |||||    
T  22423855 aaattattagtagtgtcagggtgtcagtatccgtgtcgtgttcgatgtcc 22423904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 5182673 - 5182717
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcg 307  Q
    |||||||||||||||||||  || ||||||||||||| |||||||    
T  5182673 ctatgaagcacggacattttccggattaggcgtgtctcggtgtcg 5182717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 16304479 - 16304515
Alignment:
Q  389 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    |||||||||||||||||||  ||||||||||||||||    
T  16304479 gtgtcggcgtgtcagtatctatgtcgtgtccggtgtc 16304515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 28862418 - 28862382
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtc 298  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  28862418 cctatgaagcacggacacttctcgatttaggcgtgtc 28862382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 41558726 - 41558778
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||| |||||||   |||||||| |||||||||| |||||||||||||    
T  41558726 aaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 41558778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 3058 - 2955
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||| |||||||||| | |||| |||||||||||   |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||    
T  3058 ctatggagcacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccgacacgacactgatacttgtaattacactaaat 2959  T
Q  363 tatg 366  Q
    ||||    
T  2958 tatg 2955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 425
Target Start/End: Complemental strand, 19482800 - 19482636
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||| ||| | |||| |||||| |||||   |||||| ||||||||||||||  |||| |||||||| || | |||||||||||||| ||    
T  19482800 acctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccga 19482701  T
Q  361 attatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||||||  |       |||||||||||||||||||||||||||| || |||||||||| ||||||    
T  19482700 attatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtgtc 19482636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 30838335 - 30838238
Alignment:
Q  268 aagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattat 365  Q
    ||||||||||| | ||||  |||||||||||||||||||| |||||||||| ||| || ||||||||||| ||||||||| |||||||||| ||||||    
T  30838335 aagcacggacactcctcgggttaggcgtgtcttggtgtcggacacgtgtcgcgtccgacactgacacgacaccgatacttataattacactaaattat 30838238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 429
Target Start/End: Original strand, 23292926 - 23293081
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| ||||||||||||  ||||||| ||||||||||||||           |||| |||| ||||||||||| |||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtc-----------cgacaccgacacttgtaattatactgaat 23293014  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||  |       |||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  23293015 tatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 23293081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 21945562 - 21945461
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttc 433  Q
    |||| |||| ||||||||||||||||||||||| ||       |||||||||| ||||||||| ||||||| || ||||| |||||||||||||||||||    
T  21945562 cgacaccgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtccgtgcttc 21945463  T
Q  434 at 435  Q
    ||    
T  21945462 at 21945461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 24613627 - 24613768
Alignment:
Q  260 tacctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactg 359  Q
    ||||||||||||||||||| | || | ||||| |||||| |||||||  ||||||||||||||||| || |||| ||| |||| ||||||| ||||| ||    
T  24613627 tacctatgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattg 24613726  T
Q  360 aattatgccannnnnnnaaattattagttgtgtcggcgtgtc 401  Q
    |||||||  |       |||||||||||||||||| ||||||    
T  24613727 aattatgtgattttctcaaattattagttgtgtcgacgtgtc 24613768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 22234816 - 22234922
Alignment:
Q  260 tacctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactg 359  Q
    ||||||||||||||| ||| |||||| |||||  ||||| |||||||| |||||||||||||| || || |||||||| |||| || |  ||||||||||    
T  22234816 tacctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactg 22234915  T
Q  360 aattatg 366  Q
    |||||||    
T  22234916 aattatg 22234922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 30982808 - 30982910
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| |  | | ||||||||||||  ||||||| ||||||||||||||||| || |||||||| |||| |||| ||||||||||||| |    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaat 30982907  T
Q  364 atg 366  Q
    |||    
T  30982908 atg 30982910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 420
Target Start/End: Original strand, 3947702 - 3947852
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| | |||| |||||| ||||| |||||||| |||||||||||||      | |||||||| | || ||||||||||||||||||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgt------ccgacacgacactgacacttgtaattacactgaatt 3947795  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    |||| |       |||||||||| ||||||||| |||| || || |||| |||||||    
T  3947796 atgcgattttttcaaattattagctgtgtcggcatgtccgtgtctgtgtggtgtccg 3947852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 426
Target Start/End: Original strand, 5414101 - 5414264
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | || | || ||| |||||   |||||  |||||||||||||| || ||||||||||| ||||||| | ||||||||||| ||    
T  5414101 ctatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcat 5414200  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    | ||  |       |||  ||||| |||||||||||||| || |||||||||||||||||||||    
T  5414201 tttgtgattttctaaaaaaattagctgtgtcggcgtgtccgtgtccgtgtcgtgtccggtgtcc 5414264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 19312463 - 19312366
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||| |||||||| |||||  ||||| ||||||| ||||||| ||||||||||| || || |  |||||||| ||||||||| ||||||||||||||    
T  19312463 atgaaacacggacacttctcagattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattacactgaat 19312366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 425
Target Start/End: Complemental strand, 36635449 - 36635292
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| |  ||| ||||||||||||  ||||||  || |||||||||||||| ||| ||||||     | || | ||||||||||||||    
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacga-----acacatataattacactgaat 36635355  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    ||||  |       ||||||||||| |||| ||||||||||| |||| |||||||||||||||    
T  36635354 tatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccggtgtc 36635292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 35158028 - 35158080
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  35158028 aaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtg 35158080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 34306744 - 34306803
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||| ||||| |||  ||||||||||||| ||||||| ||||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtc 34306803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 49431041 - 49430984
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    |||||||||| ||||||||||||||| | |||| ||||||||| |||||||||||||||    
T  49431041 aaattattagctgtgtcggcgtgtcactgtccgagtcgtgtcc-gtgtccgtgcttcat 49430984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 30299008 - 30298926
Alignment:
Q  332 cacgacgccgatacttgtaattacactgaattatgccannnnnnn-aaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||||| |||| ||||||||||||||||||||||| ||        |||||||||| ||||||||||||||||| ||||||||    
T  30299008 cacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 30298926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 30327876 - 30327794
Alignment:
Q  332 cacgacgccgatacttgtaattacactgaattatgccannnnnnn-aaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||||| |||| ||||||||||||||||||||||| ||        |||||||||| ||||||||||||||||| ||||||||    
T  30327876 cacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 30327794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 12797338 - 12797437
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttc 433  Q
    |||| |||| |||||||||||||||||||||||  |       |||||||||||| || |||||||||||| |||||||||| ||| || ||||||||||    
T  12797338 cgacaccgacacttgtaattacactgaattatgtgatttttc-aaattattagttttgccggcgtgtcagtgtccgtgtcgtatcc-gtatccgtgcttc 12797435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 12895317 - 12895368
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||| |||||||||||||||| | | |||||||| ||||||||||||    
T  12895317 aaattattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgt 12895368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 28084537 - 28084486
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||| |||| ||||||||||||||||  || ||||||||||||||||||||    
T  28084537 aaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtccgt 28084486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 40179576 - 40179635
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||| ||||||| | | |||||| |||||||||||| |||||||||||| ||||||||||    
T  40179576 ctatcaagcacgaataattctcggattaggcgtgtcatggtgtcgaacatgtgtcgtgtc 40179635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 40481653 - 40481610
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    |||||||||||||| ||||||||||||| || ||||||||||||    
T  40481653 aaattattagttgtatcggcgtgtcagtgtcagtgtcgtgtccg 40481610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 14465006 - 14465067
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctga 325  Q
    ||||||||||||||| | |||  ||||| ||||||   ||||||||||||||||||||||||    
T  14465006 tatgaagcacggacactcctcagattagacgtgtcccagtgtcgaacacgtgtcgtgtctga 14465067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 16073515 - 16073454
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||| ||||| | |||| |||||||||||||| |||||| ||| || |||||||    
T  16073515 acctatgaagcatggacactcctcggattaggcgtgtcttagtgtcggacatgtatcgtgtc 16073454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 31603052 - 31603101
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 426  Q
    ||||||||||| ||||  |||||||||||| |||||||||| ||||||||    
T  31603052 aaattattagtggtgtgagcgtgtcagtattcgtgtcgtgttcggtgtcc 31603101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 35161157 - 35161096
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||||||| || ||| |||||| ||||   ||||||| ||||||||||||||    
T  35161157 acctatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtc 35161096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 46083966 - 46084015
Alignment:
Q  309 acacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacact 358  Q
    |||||||||||||| |||||||||||||| |||| || | ||||||||||    
T  46083966 acacgtgtcgtgtccgatactgacacgacaccgacacatataattacact 46084015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 3064866 - 3064926
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgt 321  Q
    |||||||||||||||||| | |||| |||||||||||||  | |||| ||| |||||||||    
T  3064866 acctatgaagcacggacactcctcggattaggcgtgtctcagagtcggacatgtgtcgtgt 3064926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 12708162 - 12708110
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||||||||| |||||||||| || | |||||||| | ||||||||    
T  12708162 aaattattagttgtgtctgcgtgtcagtgtctgcgtcgtgtctgatgtccgtg 12708110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 21539807 - 21539843
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtct 299  Q
    |||||||| |||||||||| |||||||||||||||||    
T  21539807 ctatgaagtacggacatttttcgaattaggcgtgtct 21539843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 24343511 - 24343471
Alignment:
Q  389 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||||||| |  ||||||||||||||||||||||||    
T  24343511 gtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtg 24343471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 263303 - 263404
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    ||||| |||||||| | |||| ||||||||||||||||| ||||||||||||||||||||| || |||||||| | || |||| ||||||||||||||||    
T  263303 atgaaccacggacactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaatta 263402  T
Q  365 tg 366  Q
    ||    
T  263403 tg 263404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 429
Target Start/End: Original strand, 225199 - 225363
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtc-gtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||||| ||| ||||| || || ||||| |   ||| |||| |||||||| || |||    
T  225199 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcgaacacgcgtcagtgtccgacac-gacaccaacacgacacttataattacattgtatt 225297  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||| ||       |||||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  225298 atgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 225363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 263 - 404
Target Start/End: Original strand, 8564 - 8705
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | ||||||||||||||||    |||||| |||||| ||||||| ||||| |||||||| |||| | ||||||||| || ||||    
T  8564 ctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacacgtatcgtgtccgataccgacacgacaccgacatttgtaattataccgaat 8663  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagt 404  Q
    ||||  |       |||||||||||||||||||| |||||||    
T  8664 tatgtgatattttcaaattattagttgtgtcggcatgtcagt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 429
Target Start/End: Complemental strand, 15657992 - 15657828
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    |||||||| ||||| | |||| | ||||||||||  || |||| |||||||||| ||| || |   ||||||| |||| | |||||||||||||||||||    
T  15657992 atgaagcatggacactcctcggactaggcgtgtcccggcgtcggacacgtgtcgcgtccgacatcaacacgacaccgacatttgtaattacactgaatta 15657893  T
Q  365 tgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||  |       ||||||||||||| |||||||||| ||| |||||||||||||||||| |||||    
T  15657892 tgtgatttttacaaattattagttgagtcggcgtgttagtgtccgtgtcgtgtccggtgaccgtg 15657828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 357
Target Start/End: Complemental strand, 26769641 - 26769547
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacac 357  Q
    |||||||||||||||| | |||| ||||||||||||   |||||| |||||||||||||| ||||| |||| ||| |||| ||||||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacatgacaccgacacttgtaattacac 26769547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 37419875 - 37419773
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    |||||||||||||||||| | |||| ||||||||||||  ||||||| |||||  ||||||| || || |||||||| |||  |||||||||||||||||    
T  37419875 acctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactga 37419776  T
Q  361 att 363  Q
    |||    
T  37419775 att 37419773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 429
Target Start/End: Original strand, 34784911 - 34785077
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||||||| |||| | ||||||| |||||||||   |||||  ||| |||||||||| ||||| |||||||| |||| || | |||||||||| |||    
T  34784911 ctatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaat 34785010  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||  |       |||  |||||||||||||| |||||||| ||||||||||||| || |||||||    
T  34785011 tatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgtcgtgtctggggtccgtg 34785077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 412
Target Start/End: Original strand, 12668352 - 12668501
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||| | | ||||||||||| |||||    ||||  | ||||||||| ||  |||| |||||||| |||| |||| ||||||||||||||    
T  12668352 ctatgaagcacggatactcctcgaattaggtgtgtcccaatgtcagatacgtgtcgtatccaataccgacacgacaccgacacttataattacactgaat 12668451  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgt 412  Q
    |||| ||       |||||||||||| |||||||||||||||||| ||||    
T  12668452 tatgtcattttttcaaattattagttatgtcggcgtgtcagtatctgtgt 12668501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 19536441 - 19536492
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  19536441 aaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 19536492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 30717459 - 30717562
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | || | ||||||||| ||   ||||||||||||||||||||| || |  ||||||||  ||| |||||||||||||||||||    
T  30717459 ctatgaagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaat 30717558  T
Q  363 tatg 366  Q
    ||||    
T  30717559 tatg 30717562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 35056998 - 35056896
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||  ||||||||||| |  |||||| |||||||||||||| || || |||||||| |||| || | ||||||||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaat 35056899  T
Q  363 tat 365  Q
    |||    
T  35056898 tat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 429
Target Start/End: Original strand, 36756275 - 36756439
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatta 364  Q
    ||||||||| |||| | || | |||||||||||   ||||||| ||| |||| ||||  || ||| ||||||| |||| |||| ||||||||||||||||    
T  36756275 atgaagcacagacactcctaggattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaatta 36756374  T
Q  365 tgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||  |       |||||||||||||||||| ||||||||| || ||||||| |||| ||| ||||    
T  36756375 tgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtgtcgtatccgatgttcgtg 36756439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 425
Target Start/End: Complemental strand, 18422022 - 18421931
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    |||| |||| |||||||||||||||||||||||  |       ||||||||| |||||||||||||||||| |||||||||| |||| ||||    
T  18422022 cgacaccgacacttgtaattacactgaattatgtgatatttttaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatccgatgtc 18421931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 428
Target Start/End: Complemental strand, 21624326 - 21624231
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaa-ttattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||| |||| |||||||||||||||||||||||| |       ||| ||||||| ||||||||||||||||| || ||||||||| ||||||||||    
T  21624326 cgacaccgacacttgtaattacactgaattatgctatttttttaaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgt 21624231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 429
Target Start/End: Original strand, 18420363 - 18420529
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    ||||||||||| |||| |||||| |||||||||||| |  |||||||||| |||| |||| || |  ||||| || |||| |||| ||||| || |||||    
T  18420363 ctatgaagcacagacacttctcggattaggcgtgtcataatgtcgaacacttgtcatgtccgacatggacacaacaccgacacttataattgcattgaat 18420462  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||  |       ||||||||||  |||| |||||||||||||  || |||||| |||||||||||    
T  18420463 tatgtgattttctcaaattattagcagtgttggcgtgtcagtatatgtctcgtgttcggtgtccgtg 18420529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 425
Target Start/End: Complemental strand, 15972993 - 15972841
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaa 361  Q
    |||||||||||||||||||  ||| |||||| |||||  || |||| ||||||||||||||           |||| |||| ||||||||||||||||||    
T  15972993 cctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtc-----------cgacaccgacacttgtaattacactgaa 15972905  T
Q  362 ttatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    || ||  |       ||||||||| |||||||||||||||||| |||||||||| || ||||||    
T  15972904 ttgtgtaattttttcaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatctggtgtc 15972841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 30404850 - 30404950
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttc 433  Q
    ||||||||| |||||||||||||||||||||||  |       |||||||||   |||||||||||||||| |||||||| ||||| || ||||||||||    
T  30404850 cgacgccgacacttgtaattacactgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtcc-gtatccgtgcttc 30404948  T
Q  434 at 435  Q
    ||    
T  30404949 at 30404950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 11223793 - 11223895
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||  ||||||||||||  ||||||  ||| |||||||||| || ||  ||| ||| |||| |||||||||||||||||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaat 11223891  T
Q  363 tatg 366  Q
    ||||    
T  11223892 tatg 11223895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 20539717 - 20539768
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||| ||||||| ||||||||| |||||||||||||| ||||||||    
T  20539717 aaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgt 20539768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 44860449 - 44860346
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||||||||| | ||||||||||| |||||  | ||||| |||| |||||||||  | ||  ||||||| |||| || | |||||||||||||||    
T  44860449 tatgaagcacggacactcctcgaattaggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactgaatt 44860350  T
Q  364 atgc 367  Q
    ||||    
T  44860349 atgc 44860346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 420
Target Start/End: Original strand, 18840953 - 18841099
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaat 362  Q
    |||||||||||||||| | |||| |||||| |||||  ||||||| ||| |||||||||||           ||| |||| ||||||||||||||| |||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtct-----------gacaccgacacttgtaattacacttaat 18841041  T
Q  363 tatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    ||||  |       ||||||||||||||||| |||||||||| ||| |||||||||||    
T  18841042 tatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccg 18841099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 33519800 - 33519751
Alignment:
Q  379 attattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||||||  ||||||| ||||||||||||| ||||||||||||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgt 33519751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 31456560 - 31456616
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgt 319  Q
    ||||||||||||||||||| ||  ||||||| ||||| | |||||||||||||||||    
T  31456560 ctatgaagcacggacatttttccgattaggcatgtctcgatgtcgaacacgtgtcgt 31456616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 4142883 - 4142934
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    ||||| ||||| |||||||||||||||| |||| ||||||| ||||||||||    
T  4142883 aaattgttagtggtgtcggcgtgtcagtgtccgggtcgtgttcggtgtccgt 4142934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 6940309 - 6940233
Alignment:
Q  339 ccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgt 415  Q
    |||| ||||||||||||||| |||||||  |       |||||||||| ||||||||||||||||| ||||||||||    
T  6940309 ccgacacttgtaattacacttaattatgtaactttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 6940233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 30335464 - 30335392
Alignment:
Q  346 ttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    ||||||||||||| ||||||| ||       |||||||||||||||||||||||  ||| |||||||||||||    
T  30335464 ttgtaattacactaaattatgtcattttttcaaattattagttgtgtcggcgtgctagtgtccgtgtcgtgtc 30335392  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 15116755 - 15116805
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtg 315  Q
    ||||||||| |||| ||||||||||||||| |||||||| ||| |||||||    
T  15116755 atgaagcacagacacttctcgaattaggcgcgtcttggtatcggacacgtg 15116805  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 27460042 - 27459985
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgcttcat 435  Q
    |||||||||| ||||||||||||||||| ||| | | |||||| |||||||||||||||    
T  27460042 aaattattagctgtgtcggcgtgtcagtgtcc-tattgtgtcctgtgtccgtgcttcat 27459985  T

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Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 37559036 - 37558957
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||| |||| ||||||||||||| |||||||||  |       |||||||||| ||||||||||||||||| ||||||||    
T  37559036 cgacaccgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgtgtc 37558957  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 2438661 - 2438718
Alignment:
Q  265 atgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||| | |||| ||||||||||||  ||||||| ||| ||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtc 2438718  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 4882678 - 4882727
Alignment:
Q  316 tcgtgtctgatactgacacgacgccgatacttgtaattacactgaattat 365  Q
    |||||||||| || ||||||||  ||| ||||||||||||||||||||||    
T  4882678 tcgtgtctgacaccgacacgacatcgacacttgtaattacactgaattat 4882727  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 12940978 - 12941019
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    |||||||||||||||||  ||||||||| |||||||||||||    
T  12940978 aaattattagttgtgtcaacgtgtcagtgtccgtgtcgtgtc 12941019  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 20242775 - 20242811
Alignment:
Q  382 attagttgtgtcggcgtgtcagtatccgtgtcgtgtc 418  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  20242775 attagttgtgtcggcgtgtcagtgtccatgtcgtgtc 20242811  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 23058486 - 23058538
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||||||| |||||| ||||||||| | ||||||||||||| ||| ||||||    
T  23058486 aaattattaattgtgtgggcgtgtcactgtccgtgtcgtgtcaggtatccgtg 23058538  T

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Target: scaffold0223 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 20235 - 20137
Alignment:
Q  330 gacacgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||| | || |||||||||||||||||||||||  |       |||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  20235 gacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 20137  T

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Target: scaffold0136 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 3777 - 3881
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaa 361  Q
    ||||||||||| ||||| | |||| ||||||||||||| | ||||| ||| |||||||||| || ||  ||||||| | || ||||||||||||||||||    
T  3777 cctatgaagcaaggacactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaa 3876  T
Q  362 ttatg 366  Q
    |||||    
T  3877 ttatg 3881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 429
Target Start/End: Complemental strand, 8795 - 8630
Alignment:
Q  264 tatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaatt 363  Q
    ||||||||| ||||| |||||| || ||||||||||| || ||| |||||| ||  |||||| |  |||||||| |||| |||| |||||| |||||| |    
T  8795 tatgaagcatggacacttctcggataaggcgtgtcttagtatcggacacgtatcacgtctgacatagacacgacaccgacacttataattatactgaact 8696  T
Q  364 atgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||  |       ||||||||||  |||||| ||||||||| ||| ||||||||||||||||||||    
T  8695 atgtgattttcctaaattattagaagtgtcgacgtgtcagtgtccatgtcgtgtccggtgtccgtg 8630  T

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Target: scaffold0053 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 8814 - 8762
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  8814 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 8762  T

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Target: scaffold0053; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 8917 - 8858
Alignment:
Q  263 ctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtc 322  Q
    |||||||||||||| | | |||  ||||||||||||| ||||||| ||||||||||||||    
T  8917 ctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtc 8858  T

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Target: scaffold0018 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 178862 - 178910
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtc 425  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  178862 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 13416 - 13365
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  13416 aaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgt 13365  T

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Target: scaffold0152 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 21911 - 21962
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 428  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  21911 aaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgt 21962  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 71857 - 71755
Alignment:
Q  261 acctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactga 360  Q
    ||||||||||||| |||| | |||| ||||| ||||||  ||||||| |||||||| ||||| || || |||||||| | || ||| |||||||||||||    
T  71857 acctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacactgacactagtaattacactga 71758  T
Q  361 att 363  Q
    |||    
T  71757 att 71755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 429
Target Start/End: Complemental strand, 3319 - 3280
Alignment:
Q  390 tgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  3319 tgtcgacgtgtcagtatccgtgtcgtgtccggtgtccgtg 3280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 3428 - 3356
Alignment:
Q  262 cctatgaagcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacac 334  Q
    ||||||||||||||||| | |||| ||||||||||||   ||||| | |||||||| |||| || ||||||||    
T  3428 cctatgaagcacggacactcctcggattaggcgtgtcccagtgtccaccacgtgtcttgtccgacactgacac 3356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 46729 - 46646
Alignment:
Q  346 ttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||||||||||||||||||||  |       |||||||||  ||||||||||||||| | ||||||||||||||| ||||||||    
T  46729 ttgtaattacactgaattatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtg 46646  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 130536 - 130446
Alignment:
Q  339 ccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||| |||||||||||||||||||||||  |       ||| |||||  ||||||||| ||||| | ||||||||||||||||||||||||    
T  130536 ccgacacttgtaattacactgaattatgtgattttttcaaactattaactgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtg 130446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 51860 - 51791
Alignment:
Q  344 acttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtc 413  Q
    |||||||||||||||||||||||  |       |||||||||| ||||||||||||||||| ||||||||    
T  51860 acttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 51791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 53303 - 53207
Alignment:
Q  270 gcacggacatttctcgaattaggcgtgtcttggtgtcgaacacgtgtcgtgtctgatactgacacgacgccgatacttgtaattacactgaattatg 366  Q
    ||||||||| |||| | ||||  ||||||  ||||||| ||||||||| |||| || || |||||| | |||| |||| ||||||||||||||||||    
T  53303 gcacggacacttcttggattaaacgtgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatg 53207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 19592 - 19549
Alignment:
Q  377 aaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccg 420  Q
    |||||||||||||| ||||||||||||| || ||||||||||||    
T  19592 aaattattagttgtatcggcgtgtcagtgtcagtgtcgtgtccg 19549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 9909 - 9862
Alignment:
Q  382 attagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    ||||| |||||||||||||| || ||| ||||||||||||||||||||    
T  9909 attagctgtgtcggcgtgtcggtgtccatgtcgtgtccggtgtccgtg 9862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 429
Target Start/End: Original strand, 462 - 557
Alignment:
Q  334 cgacgccgatacttgtaattacactgaattatgccannnnnnnaaattattagttgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 429  Q
    |||| |||| |||||||||||||||||||| ||  |       ||||||||||  |||||||||| ||||| |||||| ||||| |||||||||||    
T  462 cgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgtg 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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