View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_low_7 (Length: 410)
Name: NF21457_low_7
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 149 - 393
Target Start/End: Original strand, 35672861 - 35673108
Alignment:
| Q |
149 |
catagtggaaggcaacaaacacatcacacatgtctcctgaat---cctcctaatatattccctttcaccaaaaacatccaaacacaagttacaccataaa |
245 |
Q |
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| T |
35672861 |
catagtggaaggcaacaaacacatcacacatgtctcctgaatgctcctcctaatatattccctttcactaaaaacatccaaacacaagttacaccataaa |
35672960 |
T |
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| Q |
246 |
caaaaagtgacccaaactttgagtcatagttttcaaccctagttcaggtttttgttcttcacgtcatcatcatattcatggcatcttcaactcacactca |
345 |
Q |
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| T |
35672961 |
caaaaagtgacccaaactttgagtcattgttttcaaccctagttcaggtttttgttcttcacgtcatcatcatattcatggcatcttcaactcacactca |
35673060 |
T |
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| Q |
346 |
tcaaatactaccacaaaaccttcatggtggaggctccacctcagcacc |
393 |
Q |
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| T |
35673061 |
tcaaatactaccacaaaaccttcatggtggaggctccacctcagcacc |
35673108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35672713 - 35672782
Alignment:
| Q |
1 |
acttttccctttaactagtatttcccttcagacattaatcattaactatactatcgcattttgatcaggc |
70 |
Q |
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| T |
35672713 |
acttttcccttcaactagtatttcccttcagacattaatcattaactatactatcgcattttgatcaggc |
35672782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 35669663 - 35669804
Alignment:
| Q |
172 |
tcacacatgtctcctgaatcctcctaatatattccctttcaccaaaaacatccaaacacaagttacac--cataaac-aaaaagtgacccaaac---ttt |
265 |
Q |
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| T |
35669663 |
tcacaaatgtctcctgaatcctcctaatatatt-cgattcactaaatagagccaaacacaagttacacaacataaacaaaaaagtgacccaaactttttt |
35669761 |
T |
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| Q |
266 |
gagtcatagttttcaaccctagttcaggtttttgttcttcacgt |
309 |
Q |
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| T |
35669762 |
gagttctagttttcaaccgt-gttcaagtttttgtttttcacgt |
35669804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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