View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21458_high_10 (Length: 309)
Name: NF21458_high_10
Description: NF21458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21458_high_10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 30932071 - 30932363
Alignment:
| Q |
17 |
ctgatgtggctcatagcgataacgaatgtggtaaaaccactaaaagaaatcgtattactataagagaatgatcggccttccgaattatgttcagaaccag |
116 |
Q |
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| T |
30932071 |
ctgatgtggctcatagcgataacgaatgtggtaaaaccactaaaagaaatcgtattactataagagaatgatcggccttccgaattatgttcagaaccag |
30932170 |
T |
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| Q |
117 |
ggactttaccatgacttaattttaagatatcaatcaattgacttgtgatttacataactatagaaaccttaacaaaaagcctcggatccgtgcacctatt |
216 |
Q |
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| T |
30932171 |
ggactttactatgacttaattttaagatatcaatcaattgacttgtgatttacataactatagaaaccttaacaaaaagcctcggatctgcgcacctatt |
30932270 |
T |
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| Q |
217 |
tcaaagaattaatccaaacatgactcctatgttatttggctgaagccccatttccctttgtgtatgccctgtagagtctctaacacctgtttc |
309 |
Q |
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| T |
30932271 |
tcaaagaattaatccaaacatgactcctatgttatttggctgaagccccatttccctttgcgtatgccctgtagagtctctaacacctgtttc |
30932363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 309
Target Start/End: Original strand, 30962436 - 30962707
Alignment:
| Q |
41 |
aatgtggtaaaaccactaaaagaaatcgtattactataagagaatgatcggccttccgaattatgttcagaacca----gggactttaccatgacttaat |
136 |
Q |
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| T |
30962436 |
aatgtggtaaaatcgctaaaaagaatcgtattattataggagaaagaccaaccttcagaataatgtccagaaccattgaggcactttactatgacttagt |
30962535 |
T |
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| Q |
137 |
tttaagatatcaatcaattgacttgtgatttacat-aactatagaaaccttaacaaaaagcctcggatccgtgcacctatttcaaagaattaatccaaac |
235 |
Q |
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| T |
30962536 |
tttaagacatcaatcaattgacttgtgatttatagcaaccttatcaataa-aacataaagccttggacccatgcacctgtt-caaagagtttatccaaac |
30962633 |
T |
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| Q |
236 |
atgactcctatgttatttggctgaagccccatttccctttgtgtatgccctgtagagtctctaacacctgtttc |
309 |
Q |
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| T |
30962634 |
ttgagtcttatgttatttggttgaatccccatttccctttgcgtatgccctgtagagtctctaaaacctgtttc |
30962707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 30946791 - 30946864
Alignment:
| Q |
42 |
atgtggtaaaaccactaaaagaaatcgtattactataagagaatgatcggccttccgaattatgttcagaacca |
115 |
Q |
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| T |
30946791 |
atgtggtaaaatcactaaaatgaatcgtattactataagagattgaccggccctcaaaattatgtctagaacca |
30946864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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