View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21458_high_2 (Length: 434)
Name: NF21458_high_2
Description: NF21458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21458_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 51011534 - 51011914
Alignment:
| Q |
20 |
gacatcatcatcagagaaaattgatgcagtttcagtagttaaactttccataattgcnnnnnnnnnnnnnnnnnacaatgttcaatcaatactttggaaa |
119 |
Q |
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| T |
51011534 |
gacatcaacatcagagaaaattgatgcagtttcagtagttaaactttccataattgctctttttttt-------acaatgttcaatcaatactttggaaa |
51011626 |
T |
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| Q |
120 |
gcctagtggaaataattgaagaggttgttaccaacctaag----cataataatgtgcaaataaattacgcaatttcaaatgtgttgttgaaatttgatac |
215 |
Q |
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| T |
51011627 |
gtctagtggaaataattgaagaggttgttaccaacctaagtaagcataataatgtgcaaataaattacccaatttcaaatgtgttgttgaaatttgatac |
51011726 |
T |
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| Q |
216 |
tcacctttcacttttcttgtataaatatttctatctctcttgtatacatacataaagagtgaatagagaaatggatggagatgatccaagttcgttattg |
315 |
Q |
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| T |
51011727 |
tcacccttcacttttcttgtataaatatttctatctctctctctcatatacataaagagtgaatagagaaatggatggagatgatccaaattcgttattg |
51011826 |
T |
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| Q |
316 |
ttacaagataacaatttttatgtgccatttaaatccatgtctctttcttttcnnnnnnnccccctgtatatcccaaaaagtagagagact |
405 |
Q |
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| T |
51011827 |
ttacaagataacaatttttatgtggcatttaaatccatgtctctttcttttctttttt--cccctttatatcccaaaaagtagagagact |
51011914 |
T |
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