View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21458_high_4 (Length: 358)

Name: NF21458_high_4
Description: NF21458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21458_high_4
NF21458_high_4
[»] chr4 (9 HSPs)
chr4 (56-338)||(25201464-25201744)
chr4 (134-336)||(13957478-13957681)
chr4 (59-328)||(51758632-51758901)
chr4 (134-336)||(42511386-42511586)
chr4 (171-336)||(10142410-10142576)
chr4 (254-336)||(14192065-14192147)
chr4 (160-336)||(51337817-51337997)
chr4 (202-336)||(28143196-28143333)
chr4 (57-295)||(20151992-20152231)
[»] chr7 (13 HSPs)
chr7 (56-336)||(39038311-39038589)
chr7 (57-336)||(43178647-43178923)
chr7 (180-336)||(24441706-24441864)
chr7 (202-336)||(6195668-6195805)
chr7 (160-336)||(6189152-6189332)
chr7 (254-336)||(19311691-19311773)
chr7 (160-336)||(48636868-48637048)
chr7 (254-336)||(8069846-8069928)
chr7 (110-319)||(23305442-23305648)
chr7 (260-319)||(8113566-8113625)
chr7 (134-270)||(8113640-8113778)
chr7 (160-336)||(48238625-48238804)
chr7 (171-244)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (57-336)||(11648157-11648435)
chr8 (56-336)||(960728-961008)
chr8 (182-288)||(35824166-35824273)
chr8 (232-336)||(602175-602280)
chr8 (178-336)||(11994463-11994623)
chr8 (134-252)||(9381946-9382062)
chr8 (184-266)||(32073462-32073545)
chr8 (254-336)||(2878957-2879039)
chr8 (77-244)||(24683070-24683231)
chr8 (254-336)||(6927306-6927388)
chr8 (254-336)||(28509524-28509606)
chr8 (254-336)||(28516731-28516813)
[»] chr6 (7 HSPs)
chr6 (56-318)||(1830844-1831104)
chr6 (134-336)||(11680517-11680720)
chr6 (170-330)||(14677914-14678076)
chr6 (254-336)||(33516375-33516457)
chr6 (170-336)||(4064985-4065150)
chr6 (180-295)||(14679000-14679116)
chr6 (275-328)||(1831137-1831190)
[»] chr5 (8 HSPs)
chr5 (56-330)||(5120580-5120856)
chr5 (134-336)||(43171066-43171267)
chr5 (56-216)||(23318168-23318327)
chr5 (170-323)||(26402144-26402295)
chr5 (170-336)||(14651489-14651656)
chr5 (160-336)||(7850480-7850660)
chr5 (254-336)||(38491310-38491392)
chr5 (56-131)||(33922247-33922322)
[»] chr1 (12 HSPs)
chr1 (56-216)||(12783770-12783929)
chr1 (70-287)||(47397224-47397437)
chr1 (182-330)||(12028035-12028183)
chr1 (182-319)||(5208454-5208592)
chr1 (218-336)||(48646236-48646355)
chr1 (160-336)||(36296868-36297048)
chr1 (160-336)||(42722403-42722583)
chr1 (202-336)||(28945560-28945697)
chr1 (254-336)||(26221954-26222036)
chr1 (253-323)||(49228403-49228473)
chr1 (218-323)||(35501355-35501460)
chr1 (205-252)||(12783628-12783675)
[»] chr3 (6 HSPs)
chr3 (134-328)||(47185206-47185401)
chr3 (254-336)||(6024505-6024587)
chr3 (160-336)||(23044645-23044825)
chr3 (202-336)||(31884705-31884842)
chr3 (200-253)||(44879476-44879529)
chr3 (260-336)||(44879802-44879878)
[»] chr2 (17 HSPs)
chr2 (134-336)||(25621679-25621882)
chr2 (134-319)||(14904265-14904451)
chr2 (56-225)||(6883446-6883607)
chr2 (56-164)||(25415782-25415890)
chr2 (134-323)||(38422322-38422512)
chr2 (170-336)||(90080-90248)
chr2 (115-283)||(43672737-43672906)
chr2 (254-336)||(2565866-2565948)
chr2 (254-336)||(18780924-18781006)
chr2 (202-336)||(19678245-19678382)
chr2 (254-336)||(6271355-6271437)
chr2 (160-336)||(29303342-29303522)
chr2 (254-336)||(45277251-45277333)
chr2 (64-156)||(10023326-10023418)
chr2 (254-336)||(7880108-7880190)
chr2 (250-319)||(25415498-25415567)
chr2 (273-336)||(6883603-6883666)
[»] scaffold0385 (1 HSPs)
scaffold0385 (217-333)||(903-1020)
[»] scaffold0178 (1 HSPs)
scaffold0178 (134-223)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (258-336)||(2557-2635)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 56 - 338
Target Start/End: Original strand, 25201464 - 25201744
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    ||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  25201464 ttattgatataagttatcaagtgtgctaaaattcat---agaaagtacacttttaacaacagtctaatattgattttttatcatcataatggacttgtta 25201560  T
Q  156 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 254  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  25201561 gaaatacttatggtatataaagagaggaatgatgtacttcttacatacaaaggagttcttgcatttatgatttctctaaaaagtctaacactaattttgt 25201660  T
Q  255 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 338  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25201661 atcaaatattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 25201744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 134 - 336
Target Start/End: Original strand, 13957478 - 13957681
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    |||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||||| ||||    
T  13957478 tatcatcataatgaacttgttagagatacttatagcatataaaaagaggaatgatgtacttctagtatacaaatgacttcttgtatctatgatttatcta 13957577  T
Q  234 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 332  Q
    |||| |||||| |||| ||||||||| |||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||     
T  13957578 aaaactctaacactaattttgtatcatgtattatcattgttatgagtttaacattgaagaattttgcatccaaaagtttaaaatttagttaattacgtgt 13957677  T
Q  333 tgat 336  Q
    ||||    
T  13957678 tgat 13957681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 59 - 328
Target Start/End: Original strand, 51758632 - 51758901
Alignment:
Q  59 ttgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaa 158  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||| |||||| |  |||||| ||||||||| ||||||| |||| ||||||||| |     
T  51758632 ttgatgtaagttattaagtgtgctaaaattcaccattgaaggtacacctttaacta--gtctaacattaattttgtatcatcgtaataaacttgttaaag 51758729  T
Q  159 atacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatc 257  Q
    ||||||||   ||||||| || ||||||||||||||| |||| ||||||||||||||| ||||  |||| |||||||||||||||| |||| ||||||||    
T  51758730 atacttatatcatataaaaagcggaatgatgtacttcaagcaaacaaaggagttcttgtatcttagattactctaaaaagtctaacactaattttgtatc 51758829  T
Q  258 aagtattattgttgttatgag-tttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 328  Q
    | ||||||||||||||||||| ||||||||||  || ||||  ||| ||||||||||| |||||||| ||||    
T  51758830 atgtattattgttgttatgagttttaacattgccgacttttccatccaaaagtttaaattttaattaattac 51758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 134 - 336
Target Start/End: Complemental strand, 42511586 - 42511386
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    |||||| ||||||||||||||||| |||||| |   ||||||| ||||||||||||||||||||| ||||||| |||||||||  |||||||||  ||||    
T  42511586 tatcattataatgaacttgttagagatacttctaacatataaaaagaggaatgatgtacttctagtatacaaaagagttcttgtgtctatgattcttcta 42511487  T
Q  234 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 332  Q
    |||||  |||| |||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||| ||| |||||||     
T  42511486 aaaag--taacactaattttgtatcatgtattattgttgttatgagtttaacattggagaa-tttgcatctaagagtttaaaatttagttaattacgtgc 42511390  T
Q  333 tgat 336  Q
    ||||    
T  42511389 tgat 42511386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 171 - 336
Target Start/End: Original strand, 10142410 - 10142576
Alignment:
Q  171 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgt 269  Q
    |||||| |||||||| |||||| ||||| |||||||||||||| || |||||||||| || ||||||||||||| ||||||| |||||| ||||||||||    
T  10142410 tataaaaagaggaatcatgtacatctagtatacaaaggagttcatgtatctatgattcctttaaaaagtctaacactaattttgtatcatgtattattgt 10142509  T
Q  270 tgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||| |||||||||||| ||||||||| ||  |||||||||||||||| ||| ||||||| ||||    
T  10142510 tgttattagtttaacattggagaattttgcattcaaaagtttaaaatttagttaattacgtgttgat 10142576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 14192147 - 14192065
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  14192147 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 14192065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 51337817 - 51337997
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  51337817 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 51337916  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  51337917 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 51337997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 28143333 - 28143196
Alignment:
Q  202 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 298  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28143333 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28143234  T
Q  299 tatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||| ||| || ||||||||||||  ||||||| ||||    
T  28143233 tatccaaatgtctaaaatttaattgattacgtgttgat 28143196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 295
Target Start/End: Complemental strand, 20152231 - 20151992
Alignment:
Q  57 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 156  Q
    ||||||||||||| | |||||||||| |||||| |||| | |   | ||| ||||||||| ||||| | | || || ||| |||| ||| |||||| |||    
T  20152231 tattgatataagtgagtaagtgtgcttaaattcctcattggagacatactattaacaacattctaacactcatattatataatcaaaataaacttgatag 20152132  T
Q  157 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac-tctaatttgta 255  Q
    | |||||| |   ||||||| ||| ||||||| ||||| || | || |||||||||||||||| | | ||| ||||||||||| |||| |    ||||||    
T  20152131 agatacttgtaacatataaaaagatgaatgatatacttgtaacttataaaggagttcttgcattttttattcctctaaaaagtttaacattggttttgta 20152032  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaatt 295  Q
    |||| |||| ||||||||||| |||||| |||| ||||||    
T  20152031 tcaactattgttgttgttatgggtttaatattggagaatt 20151992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 56 - 336
Target Start/End: Complemental strand, 39038589 - 39038311
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| || || ||| ||||| |||||||||||| |||||||||    
T  39038589 ttattgatataaattattaagtgtgctaaaattcatcattgaaggtacacttttaacaacaatccaacattgattttgtatcatcataataaacttgtta 39038490  T
Q  156 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 254  Q
    || ||||||||   ||||||| ||||||||||||||||||||||||||||||||||| ||  || || |||| |||||||||||||||| |||| |||||    
T  39038489 gagatacttataacatataaaaagaggaatgatgtacttctagcatacaaaggagtttttctatatacgattcctctaaaaagtctaacactaattttgt 39038390  T
Q  255 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||| |||||||||||||||||||||||||||||  ||  |||  ||| |||||||||||||||||||| ||||||| ||||    
T  39038389 atcatgtattattgttgttatgagtttaacattg-gga--tttccatccaaaagtttaaaatttaattaattacgtgttgat 39038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 57 - 336
Target Start/End: Complemental strand, 43178923 - 43178647
Alignment:
Q  57 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 156  Q
    |||||||||||||||||||||||| ||||||| | ||| ||| |||||| |||||||| ||||||| ||| ||||| ||||||||||||||| ||| |||    
T  43178923 tattgatataagttattaagtgtgttaaaattaaccattgaaggtacacatttaacaatagtctaacattgattttgtatcatcataatgaatttggtag 43178824  T
Q  157 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 255  Q
    | ||||||||   ||||||| |||| |||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||| |||| ||||||    
T  43178823 agatacttatatcatataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgta 43178724  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    | | ||||||   |||||||||||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||| ||||    
T  43178723 t-atgtatta---ttgttatgagtttaacattggagatttttttatccaaaagtttaaaatttaattaattacgtgttgat 43178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 336
Target Start/End: Complemental strand, 24441864 - 24441706
Alignment:
Q  180 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgag 278  Q
    ||||||||| ||||||||| |||||||||||||||||  ||||||||| ||||||||||| ||||  ||| ||||||||| |||||||||||||| ||||    
T  24441864 aggaatgatatacttctagtatacaaaggagttcttgtgtctatgattcctctaaaaagtttaacaataattttgtatcatgtattattgttgttttgag 24441765  T
Q  279 ttt-aacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||| ||||||||||||||||| ||| |||||||||||||||| ||| ||||||| ||||    
T  24441764 tttaaacattgaagaattttgcatccaaaagtttaaaatttatttaattacgtgttgat 24441706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 6195805 - 6195668
Alignment:
Q  202 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 298  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  6195805 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 6195706  T
Q  299 tatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||| ||| |||||||||||||||| ||||||| ||||    
T  6195705 tatccaaatgtttaaaatttaattaattacgtgttgat 6195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 336
Target Start/End: Complemental strand, 6189332 - 6189152
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  6189332 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 6189233  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6189232 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtataaaatttaattaattacgtgttgat 6189152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 19311773 - 19311691
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  19311773 tatcaagtattattgttgttatgggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 19311691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 48636868 - 48637048
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48636868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48636967  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  48636968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 48637048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 8069846 - 8069928
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  8069846 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 8069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 319
Target Start/End: Original strand, 23305442 - 23305648
Alignment:
Q  110 aacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagga 209  Q
    ||||||||||||| ||| ||||| || |||| ||||||||||| ||      ||| | | |||| || |||||||| || ||||||||||||||||| ||    
T  23305442 aacaacagtctaacattgattttgtaacatcgtaatgaacttggta------cttgtagcatattaaaagaggaataatctacttctagcatacaaatga 23305535  T
Q  210 gttcttgcatctatgatttctctaaaaagtctaactctaatttg-tatc--aagtattattgttgttatgagtttaacattgaagaattttgtatctaaa 306  Q
    ||||| | ||||  |||| ||| ||||||||||||  | ||||  ||||  |||||||||||| |||||| ||||||||||| | ||||||||||| |||    
T  23305536 gttctcgtatcttagattcctcaaaaaagtctaaccttgattttctatcgcaagtattattgtagttatgggtttaacattggataattttgtatccaaa 23305635  T
Q  307 agtttaaaattta 319  Q
    ||| |||||||||    
T  23305636 agtctaaaattta 23305648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 8113625 - 8113566
Alignment:
Q  260 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 319  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  8113625 gtattattgttgttatgagtttaacattggagaattttgcatccaaaagtttaaaattta 8113566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 134 - 270
Target Start/End: Complemental strand, 8113778 - 8113640
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctct- 232  Q
    |||||||||||||||||||||||| |||  |||   |||||||   | ||||||||||||||||  ||||||||||  ||||| ||| |||||| ||||     
T  8113778 tatcatcataatgaacttgttagagatatctataacatataaaagtaagaatgatgtacttctactatacaaaggaactcttgtatcgatgattcctcta 8113679  T
Q  233 aaaaagtctaactctaa-tttgtatcaagtattattgtt 270  Q
    |||||||||||| |||| ||||||||| |||||||||||    
T  8113678 aaaaagtctaacactaattttgtatcatgtattattgtt 8113640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 48238625 - 48238804
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48238625 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48238724  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||  ||| || ||||||||||||| ||||||| ||||    
T  48238725 tcaagtattattgttgttatgtgtt-aacattggagaattttgtattcaaatgtctaaaatttaattaattacgtgttgat 48238804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 14573995 - 14574068
Alignment:
Q  171 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 244  Q
    |||||| ||| ||||||||||||| || | || |||||||||||||| ||| ||||| |||| |||||||||||    
T  14573995 tataaaaagaagaatgatgtacttgtaacgtataaaggagttcttgcctctttgattcctctgaaaagtctaac 14574068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 57 - 336
Target Start/End: Complemental strand, 11648435 - 11648157
Alignment:
Q  57 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 156  Q
    |||| ||||||||||||||||||||| |||| || ||| |||  ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||||    
T  11648435 tattaatataagttattaagtgtgcttaaatacaccattgaagttacacatttaacaatagtctaacattaattttgtatcattataatgaacttgttag 11648336  T
Q  157 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 255  Q
    | |||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| |||| ||| |||| ||||||    
T  11648335 agatacttatagtttataaaaagaggaatgatgtatttctagcatacaaaggagttattgtatctatgattcctctaaagagtcaaacactaattttgta 11648236  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||  | |||||||||||||||||||||||||| || |||||  ||| |||||||||||||||||||| ||| ||| ||||    
T  11648235 tca--tgttattgttgttatgagtttaacattggagtatttttcatccaaaagtttaaaatttaattaattatgtgttgat 11648157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 56 - 336
Target Start/End: Complemental strand, 961008 - 960728
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    ||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||| || || ||||||||| ||||||||||||||||||||||    
T  961008 ttattgatataagttattaagtgtgctaaaattgaccattgaaggcacacttttaacaacaatccaacattaattttgtatcatcataatgaacttgtta 960909  T
Q  156 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaag-tctaactctaattt-g 253  Q
    |  ||  ||||   ||||||| |||||||||||  |||| ||||||||||| ||||||||| |||||||||| |||||||||  ||||||  |||||| |    
T  960908 gctatgtttataacatataaaaagaggaatgat--acttatagcatacaaatgagttcttgtatctatgattcctctaaaaaaatctaacattaattttg 960811  T
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
     | || ||||| ||||||| ||||||||||||||  ||||||||| ||| ||||||||||| |||||||| ||||||| ||||    
T  960810 caccatgtattcttgttgtgatgagtttaacattagagaattttgcatcaaaaagtttaaattttaattaattacgtgttgat 960728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 35824166 - 35824273
Alignment:
Q  182 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 280  Q
    ||||||||||||||| | |||||||||| |||||  |||||||||| ||||||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  35824166 gaatgatgtacttctggtatacaaaggatttcttttatctatgattcctctaaaaagtttaacactaattttgtatcatgtattattgttgttatgagtt 35824265  T
Q  281 taacattg 288  Q
    ||||||||    
T  35824266 taacattg 35824273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 602280 - 602175
Alignment:
Q  232 taaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 330  Q
    ||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||||| ||||||    
T  602280 taaaaagtctaacactaattttgtgtcatgtattattgttgttatgagtttaacattttagaattttccatccaaaagtttaaaatttaattaattacgt 602181  T
Q  331 gatgat 336  Q
    | ||||    
T  602180 gttgat 602175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 336
Target Start/End: Complemental strand, 11994623 - 11994463
Alignment:
Q  178 agaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattattgttgttat 275  Q
    ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||||||||||    
T  11994623 agaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattttaacacatttttttttatcaagtattattgttgttat 11994524  T
Q  276 gagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    | ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  11994523 gggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 11994463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 9382062 - 9381946
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    |||||||||||||||||||||||   ||| | | | ||||||| | | ||||||||||||||||  ||||||| ||||||||| |||||||||| |||||    
T  9382062 tatcatcataatgaacttgttagc--tacctgtagcatataaaaataagaatgatgtacttctaatatacaaaagagttcttgtatctatgattcctcta 9381965  T
Q  234 aaaagtctaactctaattt 252  Q
    ||||||||||| |||||||    
T  9381964 aaaagtctaacactaattt 9381946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 32073462 - 32073545
Alignment:
Q  184 atgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattat 266  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  32073462 atgatgtacttctagcatacaaatgagtttttgtatctatgattcctctaaaaagtctaactctaactttgtatcttgtattat 32073545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 2879039 - 2878957
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2879039 tatcaagtattattgttgttatgagtttaatattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2878957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 24683070 - 24683231
Alignment:
Q  77 tgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaa 176  Q
    |||||||||||||| ||| | | ||||||  ||||||||||||||| ||| ||||| ||| |||||||| |||||| ||       || | | |||||||    
T  24683070 tgtgctaaaattcaccattggaggtacacagttaacaacagtctaacattgattttgtattatcataataaacttggtat------ttgtagcatataaa 24683163  T
Q  177 gagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 244  Q
     ||||||||||| ||||| ||||||||||| ||||||||| ||||  |||| ||||||||||||||||    
T  24683164 aagaggaatgatttacttgtagcatacaaatgagttcttgtatcttagattactctaaaaagtctaac 24683231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 6927388 - 6927306
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6927388 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 28509524 - 28509606
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28509524 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 28516731 - 28516813
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28516731 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28516813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 56 - 318
Target Start/End: Original strand, 1830844 - 1831104
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    |||||||||||||||||||||||| |||||||| | ||| |||||||||| |||||||| ||| ||| ||| ||||| ||||||||||||||||||| ||    
T  1830844 ttattgatataagttattaagtgtcctaaaattaaccattgaaagtacacatttaacaatagtataacattgattttgtatcatcataatgaacttgcta 1830943  T
Q  156 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 254  Q
    |||||||||||   ||||||| ||| |||||||| |||||||||||||||||||| ||||| ||   ||||| |||||||||||||||  |||| |||||    
T  1830944 gaaatacttataacatataaaaagatgaatgatgcacttctagcatacaaaggagctcttgtattattgattactctaaaaagtctaaaactaattttgt 1831043  T
Q  255 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattt 318  Q
    |||| ||||||   ||||||| |||||||||||| ||||||||  ||| |||||||||||||||    
T  1831044 atcatgtatta---ttgttataagtttaacattggagaattttccatccaaaagtttaaaattt 1831104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 336
Target Start/End: Complemental strand, 11680720 - 11680517
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    |||||||||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||| |||  | ||||||  |   |||| |||| ||| |    
T  11680720 tatcatcataatgaacttgttagagatacttatagcatataaaaagagtaatgatgtacttctagtatattatggagttactctgtctaagattcctcaa 11680621  T
Q  234 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 332  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||| |||||||     
T  11680620 aaaagtctaacaataattttgtatcaagtattattgttgttaggagtttaacattggagaattttgcatctaaaactttaaaatttagttaattacgtgt 11680521  T
Q  333 tgat 336  Q
    ||||    
T  11680520 tgat 11680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 14677914 - 14678076
Alignment:
Q  170 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 267  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| |||||| |  |  ||| ||||||||||||||    
T  14677914 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattctaacacatttttttttatcaagtattatt 14678013  T
Q  268 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 330  Q
    ||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||    
T  14678014 gttgttatgggtttaacattggagaattttgtatccaaatgtctaaaatttaattaattacgt 14678076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 33516457 - 33516375
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  33516457 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 33516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 336
Target Start/End: Complemental strand, 4065150 - 4064985
Alignment:
Q  170 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattg 268  Q
    |||||||  |||||||||||| ||| || |||| ||||||||||||| |||| || || |||||||||||  ||| ||  ||| ||||||||||| ||||    
T  4065150 atataaaatgaggaatgatgttcttgtaacatataaaggagttcttgtatctttggttcctctaaaaagt--aacgctggttttgtatcaagtataattg 4065053  T
Q  269 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||| |||| |||||| |||| |||||| || ||| |||||  ||||||||||||| ||| ||| ||||    
T  4065052 ttgctatgggtttaatattggagaattatgcatccaaaaggctaaaatttaattaattaagtgttgat 4064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 14679116 - 14679000
Alignment:
Q  180 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgag 278  Q
    |||||||||| |||| || |||| ||| ||| | |||||||| |||||  |||||||| | |||| ||| ||| |||||||||||||||||| | ||| |    
T  14679116 aggaatgatgcacttgtaacatataaatgagattttgcatctctgattcttctaaaaaatttaacactagttttgtatcaagtattattgttatcatgcg 14679017  T
Q  279 tttaacattgaagaatt 295  Q
    ||||| |||||||||||    
T  14679016 tttaatattgaagaatt 14679000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 1831137 - 1831190
Alignment:
Q  275 tgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 328  Q
    |||||||||||||| ||||||||  ||| ||||||||||||| |||||| ||||    
T  1831137 tgagtttaacattggagaattttcgatccaaaagtttaaaatataattaattac 1831190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 56 - 330
Target Start/End: Complemental strand, 5120856 - 5120580
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    |||||||||||| |||| |||||||||||||||||   | ||| ||||||||||||||||||| ||| ||| || || |||||| |||||||||||||||    
T  5120856 ttattgatataaattatcaagtgtgctaaaattcacatttgaaggtacacttttaacaacagtttaacattgatattctatcattataatgaacttgtta 5120757  T
Q  156 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagg---agttcttgcatctatgatttctctaaaaagtctaactctaa-tt 251  Q
    || ||||||||   ||||||| ||||||||| ||||||||||||||||||| |   |||||||| |||||||||| || |||||| |||||| |||| ||    
T  5120756 gagatacttatatcatataaaaagaggaatggtgtacttctagcatacaaatgatcagttcttgtatctatgattcctttaaaaactctaacactaattt 5120657  T
Q  252 tgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 330  Q
    ||||||| |||||||||||||||| ||  |||||||| ||||||||  ||| |||||||||||||||||||| ||||||    
T  5120656 tgtatcatgtattattgttgttataag--taacattggagaatttttcatccaaaagtttaaaatttaattaattacgt 5120580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 134 - 336
Target Start/End: Complemental strand, 43171267 - 43171066
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    ||||||||||||||||||  |||| |||| |||   ||||||| | |||||||||||||||||||  |||||||||||||||| || ||||||| |||||    
T  43171267 tatcatcataatgaactt--tagagatacctataacatataaaaaaaggaatgatgtacttctagtgtacaaaggagttcttgtatttatgattcctcta 43171170  T
Q  234 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 332  Q
     |||||||||| ||||||| |||| | |||||||| |||||| ||||||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||     
T  43171169 caaagtctaacactaattttgtattatgtattatttttgttacgagtttaacattggagaattttgcatccaaaagtttaaaatttagttaattacgtgt 43171070  T
Q  333 tgat 336  Q
    ||||    
T  43171069 tgat 43171066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 23318327 - 23318168
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    ||||||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||   ||| ||| ||||| ||| ||||||||||||||||||    
T  23318327 ttattgatataagttattaagtgtgataaatttcaccattgaatgtacacttttaacaacaacataacattgattttgtataatcataatgaacttgtta 23318228  T
Q  156 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 216  Q
     | |||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  23318227 aagatacttatagtatataaaaagaggaatgatgtacttctaacatac-aaggagttcttg 23318168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 170 - 323
Target Start/End: Original strand, 26402144 - 26402295
Alignment:
Q  170 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaat-ttgtatcaagtattattg 268  Q
    ||||||| ||| ||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| |||| ||||| |||||||| ||||||||     
T  26402144 atataaaaagaagaatgatatacttctagaatacaaaggagttcttgtacctatgatttctctaaaaagtgtaacactaatgttgtatcatgtattatta 26402243  T
Q  269 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 323  Q
     |   |||||||||| |||| ||||||||  ||| ||||||||||||||||||||    
T  26402244 gt---atgagtttaaaattggagaattttccatccaaaagtttaaaatttaatta 26402295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 336
Target Start/End: Complemental strand, 14651656 - 14651489
Alignment:
Q  170 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc-taatttgtatcaagtattattg 268  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| | |  ||| |||||||||||||||    
T  14651656 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacattttttttatcaagtattattg 14651557  T
Q  269 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  14651556 ttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 14651489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 7850480 - 7850660
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  7850480 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 7850579  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  7850580 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 7850660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 38491310 - 38491392
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  38491310 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 38491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 33922322 - 33922247
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattt 131  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||| |||||| ||| ||| ||||    
T  33922322 ttattgacataagtgattaagtgtgctaaaattcatcattgaaggtacacttttaataacagtttaaaattgattt 33922247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 12783929 - 12783770
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  12783929 ttattgataaaagttattaagtgtgttaaaattcatcattgaaggtacacttttaacaacagtctaacattgattttgtatcatcataatgaacttgtta 12783830  T
Q  156 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 216  Q
    || |||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  12783829 gagatacttatagcatataaaaagaggaatgatgtacttctaggatac-aaggagttcttg 12783770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 70 - 287
Target Start/End: Complemental strand, 47397437 - 47397224
Alignment:
Q  70 tattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggt 169  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||| |||||| ||| ||||| ||||||     ||||||||||||| |||||||| |     
T  47397437 tattaagtgtgctaaaatttaccattgaaggtacacttttaacaaccgtctaacattgattttgtatcat-----tgaacttgttagagatacttatagc 47397343  T
Q  170 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattg 268  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||| ||||||||||| |||  |||| ||||||||| ||||| |||    
T  47397342 atataaagagaggaatgatgtccttctagcatataaaggagttattgtatttatgattcctctaaaaagtgtaaaactaattttgtatcatgtatttttg 47397243  T
Q  269 ttgttatgagtttaacatt 287  Q
    |||||||||||||||||||    
T  47397242 ttgttatgagtttaacatt 47397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 12028035 - 12028183
Alignment:
Q  182 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtt 280  Q
    |||||||||| |||| | ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  12028035 gaatgatgtatttcttgtatacaaaggagttcttgtatctatgattcctctaaaa-gtctaacactaattttgtatcatgtattattgttgttatgagtt 12028133  T
Q  281 taacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 330  Q
    |||||||| ||||||||| ||| |||||||||||||||| ||| ||||||    
T  12028134 taacattggagaattttgcatccaaaagtttaaaatttagttaattacgt 12028183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 319
Target Start/End: Complemental strand, 5208592 - 5208454
Alignment:
Q  182 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 280  Q
    |||||||| |||||||| |||| || ||||||||| ||||||||||||||||||||||||||| |||| |||||||||  ||||| |||||||||| ||     
T  5208592 gaatgatgcacttctagtatacgaatgagttcttgtatctatgatttctctaaaaagtctaacactaattttgtatcatatattactgttgttatgggtc 5208493  T
Q  281 taacattgaagaattttgtatctaaaagtttaaaattta 319  Q
    |||||||| ||||||||| ||| ||||||||||||||||    
T  5208492 taacattgtagaattttgcatccaaaagtttaaaattta 5208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 48646236 - 48646355
Alignment:
Q  218 atctatgatttctctaaaaagtctaactctaatttg-tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaat 316  Q
    ||||||| || ||||||||| |||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  48646236 atctatggttcctctaaaaattctaacactaattttatatcatgtattattgttgttatgagtttaacattgaagaattttgcatctaaatgtttaaaat 48646335  T
Q  317 ttaattacttacgtgatgat 336  Q
    ||||||| || |||| ||||    
T  48646336 ttaattaattgcgtgttgat 48646355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 36296868 - 36297048
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  36296868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 36296967  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  36296968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 36297048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 42722403 - 42722583
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  42722403 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 42722502  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  42722503 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 42722583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 28945697 - 28945560
Alignment:
Q  202 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 298  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28945697 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28945598  T
Q  299 tatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  28945597 tatccaaatgtctaaaatttaattaattacgtgttgat 28945560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 26221954 - 26222036
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  26221954 tatcaagtattattgtttttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 26222036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 49228473 - 49228403
Alignment:
Q  253 gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 323  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  |   ||||||||||||| ||||||    
T  49228473 gtatcacgtattattgttgttatgagtttaacattggagaatttttcaatcaaaagtttaaaatgtaatta 49228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 35501460 - 35501355
Alignment:
Q  218 atctatgatttctctaaaaagtctaactctaatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatt 317  Q
    |||| ||||||||| |||||||||||| |   ||| |||||||||||||  |||||||| ||||||||||| |||||  |||||  |||||  |||||||    
T  35501460 atctttgatttctcgaaaaagtctaacacatttttttatcaagtattataattgttatgggtttaacattggagaatgatgtatacaaaagcctaaaatt 35501361  T
Q  318 taatta 323  Q
    ||||||    
T  35501360 taatta 35501355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 12783675 - 12783628
Alignment:
Q  205 aaggagttcttgcatctatgatttctctaaaaagtctaactctaattt 252  Q
    |||||||||||| |||||||||| |||||||||||||| | |||||||    
T  12783675 aaggagttcttgtatctatgattcctctaaaaagtctaccactaattt 12783628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 328
Target Start/End: Original strand, 47185206 - 47185401
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    |||||||| ||||||||||||||| |||||||| | ||||||| |||| |||||||||||| ||   |||||| ||||||||| |||||||||| |||||    
T  47185206 tatcatcacaatgaacttgttagagatacttatagcatataaaaagagaaatgatgtacttataatgtacaaaagagttcttgtatctatgattcctcta 47185305  T
Q  234 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 328  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||| ||| ||||    
T  47185306 aaaagtctaacactaattttgtatcatgaattattgttgttatgagtttaacattggagaattttgcatccaaatgtttaaaatttagttaattac 47185401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 6024587 - 6024505
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  6024587 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 6024505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 336
Target Start/End: Complemental strand, 23044825 - 23044645
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  23044825 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 23044726  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  23044725 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 23044645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 31884842 - 31884705
Alignment:
Q  202 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 298  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  31884842 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 31884743  T
Q  299 tatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  31884742 tatccaaatgtctaaaatttaattaattacgtgttgat 31884705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 44879476 - 44879529
Alignment:
Q  200 atacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg 253  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  44879476 atacaaaggagttcttgtatctatgattcctctaaaaagtctaacactaatttg 44879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 44879802 - 44879878
Alignment:
Q  260 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||| ||||||||||||||| |||| ||||||| | ||||| ||| |||||||||| ||| ||||||| ||||    
T  44879802 gtattattattgttatgagtttaatattggagaatttggcatctagaagattaaaatttagttaattacgtgttgat 44879878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 134 - 336
Target Start/End: Original strand, 25621679 - 25621882
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    |||||| |||||||| |||||||| |||  |||   ||| ||| |||||||||||||||||| || ||||||| ||||| ||| || ||||||| |||||    
T  25621679 tatcattataatgaagttgttagagatatgtatatcatagaaaaagaggaatgatgtacttccagtatacaaatgagttattgtatttatgattcctcta 25621778  T
Q  234 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 332  Q
    ||| ||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||  || ||||||||||||||||| || |||||||     
T  25621779 aaaggtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggagaattttgcttccaaaagtttaaaatttaactaattacgtgt 25621878  T
Q  333 tgat 336  Q
    ||||    
T  25621879 tgat 25621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 319
Target Start/End: Original strand, 14904265 - 14904451
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    |||||||||||||||||||||||| ||||||||   ||||||| |||||| |||| ||||| ||| ||| ||| ||||| |||  |||||||||  ||||    
T  14904265 tatcatcataatgaacttgttagagatacttataacatataaaaagaggagtgatatacttatagtatataaatgagttattgtttctatgattcttcta 14904364  T
Q  234 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 319  Q
    |||| ||||||  ||| ||||||||| ||||||||||||||| ||| ||||||||| | ||||||| ||  ||||||||||||||||    
T  14904365 aaaaatctaacaataattttgtatcatgtattattgttgttaggaggttaacattggataattttgcattcaaaagtttaaaattta 14904451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 6883446 - 6883607
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    |||||||||||| |||||||||||||||||     ||| |||   ||| ||||||||||| ||| || ||| ||||| ||||||||||||||||||||||    
T  6883446 ttattgatataaattattaagtgtgctaaa-----tcaaaga---tacgcttttaacaacggtcgaacattgattttatatcatcataatgaacttgtta 6883537  T
Q  156 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatga 225  Q
    || |||||| | | ||||||| ||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  6883538 gagatacttgtagcatataaaaagaggaatgatgtacttttagtatacaaatgagttcttgtatctatga 6883607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 25415890 - 25415782
Alignment:
Q  56 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 155  Q
    |||||||||||| || |||||||| |||||||||||| | ||| ||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  25415890 ttattgatataaatttttaagtgtactaaaattcatctttgaaggtacacttttaacaacaatctaacattgattttgtatcatcataatgaacttgtta 25415791  T
Q  156 gaaatactt 164  Q
    || ||||||    
T  25415790 gagatactt 25415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 134 - 323
Target Start/End: Complemental strand, 38422512 - 38422322
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 233  Q
    |||||||| |||||||||| |||| |||||| | | ||||||| ||||||||||||||||| || |||| ||||||||||| | |||| |||||  ||||    
T  38422512 tatcatcacaatgaacttgatagagatacttgtagcatataaaaagaggaatgatgtacttgtaacatataaaggagttctagtatctttgattcttcta 38422413  T
Q  234 aaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 323  Q
    ||||||||||| ||   ||||||||||||| |||| |||||||| |||| | |||| |||| | || ||| |||||  |||||||||||||    
T  38422412 aaaagtctaacactggttttgtatcaagtaatattattgttatgggtttgatattggagaagtctgcatccaaaaggctaaaatttaatta 38422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 336
Target Start/End: Complemental strand, 90248 - 90080
Alignment:
Q  170 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 267  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||    
T  90248 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacatttttttttatcaagtattatt 90149  T
Q  268 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  90148 gttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 90080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 283
Target Start/End: Complemental strand, 43672906 - 43672737
Alignment:
Q  115 cagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttct 214  Q
    |||||||| ||| || || |||||||| |||||| ||| |||||||||||   | ||||||| ||||||||||||||||| || |||| |||||||||      
T  43672906 cagtctaacattgatattgtatcatcacaatgaatttgatagaaatacttgcagcatataaaaagaggaatgatgtacttgtaacatataaaggagttac 43672807  T
Q  215 tgcatctatgatttctctaaaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaa 283  Q
     | |||| ||||| |||||||||||||||  || | ||||||||||||||||||| ||||||| ||||||    
T  43672806 ggtatctttgattcctctaaaaagtctaatactgattttgtatcaagtattattgatgttatgggtttaa 43672737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 2565866 - 2565948
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2565866 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2565948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 18781006 - 18780924
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  18781006 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 18780924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 336
Target Start/End: Original strand, 19678245 - 19678382
Alignment:
Q  202 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 298  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  19678245 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 19678344  T
Q  299 tatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  19678345 tatccaaatgtctaaaatttaattaattacgtgttgat 19678382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 6271437 - 6271355
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6271437 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6271355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 29303342 - 29303522
Alignment:
Q  160 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 255  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  29303342 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 29303441  T
Q  256 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  29303442 tcaagtattattgttgttatgtgtttagaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 29303522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 45277333 - 45277251
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  45277333 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 45277251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 10023326 - 10023418
Alignment:
Q  64 ataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 156  Q
    ||||||||| ||||||||||||||||  ||| ||| |  ||||||||||| || ||||| ||| ||||| |||||||||||||||||||||||    
T  10023326 ataagttatgaagtgtgctaaaattctccattgaatgcgcacttttaacatcaatctaacattgattttgtatcatcataatgaacttgttag 10023418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 7880190 - 7880108
Alignment:
Q  254 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || |||||||||| || ||||||| ||||    
T  7880190 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaactaattacgtgttgat 7880108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 25415567 - 25415498
Alignment:
Q  250 tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 319  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||||||  ||| |||| |||||||||||    
T  25415567 tttgtatcatgtattattgttgttatgagcttaacattagagaattttccatcaaaaactttaaaattta 25415498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 6883603 - 6883666
Alignment:
Q  273 tatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    |||||||||||||||| |||||||| |||| |||| ||||||||||||||| ||| ||| ||||    
T  6883603 tatgagtttaacattggagaattttctatccaaaaatttaaaatttaattaattatgtgttgat 6883666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 903 - 1020
Alignment:
Q  217 catctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaa 315  Q
    ||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||  |||||||| ||| || ||||||| |    
T  903 catctatgattcctctaaaaagtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggtgaattttgcatccaatagtttaata 1002  T
Q  316 tttaattacttacgtgat 333  Q
    |||| ||| |||| ||||    
T  1003 tttagttaattacatgat 1020  T

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Target: scaffold0178 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 1104 - 1015
Alignment:
Q  134 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctat 223  Q
    |||||||||||||||||||||||| ||| |||| | ||||||| ||||||| ||||||||||||| ||||||| ||||||||| ||||||    
T  1104 tatcatcataatgaacttgttagagataattatagcatataaaaagaggaacgatgtacttctagtatacaaaagagttcttgtatctat 1015  T

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Target: scaffold0743 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 2635 - 2557
Alignment:
Q  258 aagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 336  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| ||| || ||||||||||||| ||| ||| ||||    
T  2635 aagtattattgttgttatgtgtttaacattggataattttgtatccaaatgtctaaaatttaattaattatgtgttgat 2557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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