View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21458_high_7 (Length: 335)

Name: NF21458_high_7
Description: NF21458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21458_high_7
NF21458_high_7
[»] chr5 (3 HSPs)
chr5 (1-138)||(7927164-7927301)
chr5 (142-258)||(30964673-30964797)
chr5 (207-253)||(35836303-35836349)
[»] chr4 (1 HSPs)
chr4 (144-258)||(26144947-26145069)
[»] chr1 (2 HSPs)
chr1 (196-253)||(29633680-29633737)
chr1 (151-257)||(51946197-51946312)
[»] chr8 (2 HSPs)
chr8 (144-251)||(41076478-41076595)
chr8 (144-251)||(42009169-42009285)
[»] chr3 (2 HSPs)
chr3 (206-257)||(6102022-6102073)
chr3 (144-193)||(6100982-6101031)
[»] chr6 (1 HSPs)
chr6 (216-257)||(31047199-31047240)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 7927164 - 7927301
Alignment:
Q  1 atgggaagaaggagagtgtgagtttgagattcatcacaaagtgaaatcaaattagtgagactttgatttctacgccaatgagcgggataattttcccacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927164 atgggaagaaggagagtgtgagtttgagattcatcacaaagtgaaatcaaattagtgagactttgatttctacgccaatgagcgggataattttcccacc 7927263  T
Q  101 ttcctgggctgttattacccaaccaccctagtaaataa 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7927264 ttcctgggctgttattacccaaccaccctagtaaataa 7927301  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 30964797 - 30964673
Alignment:
Q  142 atgagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----atgg----tagttttggtattttatcttttaatgaagggtagtt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||     ||||    |||||||||||||| |||||||||||||||||||||    
T  30964797 atgagtcctgataggtgaacacacttagctggcaacacactcttgtacacctccatatggaggatagttttggtatttcatcttttaatgaagggtagtt 30964698  T
Q  234 tagtcaaaactcatataaaccttga 258  Q
    |||||||||||||||||||||||||    
T  30964697 tagtcaaaactcatataaaccttga 30964673  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 35836349 - 35836303
Alignment:
Q  207 tattttatcttttaatgaagggtagtttagtcaaaactcatataaac 253  Q
    ||||| |||||||||||||||||||||| |||| || ||||||||||    
T  35836349 tatttcatcttttaatgaagggtagttttgtcataattcatataaac 35836303  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 26144947 - 26145069
Alignment:
Q  144 gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----atgg----tagttttggtattttatcttttaatgaagggtagttta 235  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||     ||||    |||||||||||||| |||||||||||||||||||||||    
T  26144947 gagtcctgatgggtgaacacacttagctggcaacacactcttgtacacctccatatggaggatagttttggtatttcatcttttaatgaagggtagttta 26145046  T
Q  236 gtcaaaactcatataaaccttga 258  Q
    |||||||||||||||||||||||    
T  26145047 gtcaaaactcatataaaccttga 26145069  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 29633737 - 29633680
Alignment:
Q  196 ggtagttttggtattttatcttttaatgaagggtagtttagtcaaaactcatataaac 253  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  29633737 ggtagttttggtatttcatcttttaatgaagggtagttttgtcaaaacccatataaac 29633680  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 51946312 - 51946197
Alignment:
Q  151 gataggtgaacacacttagctggcaacacactctgatacaccc---------atggtagttttggtattttatcttttaatgaagggtagtttagtcaaa 241  Q
    ||||||||||||||||||||  ||||||||| || ||||||||         ||| ||||||| ||||||  ||||||||||||||||||||| ||||||    
T  51946312 gataggtgaacacacttagcatgcaacacacccttatacacccccatgtggcatgatagttttagtatttcttcttttaatgaagggtagttttgtcaaa 51946213  T
Q  242 actcatataaaccttg 257  Q
    || |||||||||||||    
T  51946212 acccatataaaccttg 51946197  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 41076595 - 41076478
Alignment:
Q  144 gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----------atggtagttttggtattttatcttttaatgaagggtagtt 233  Q
    |||||||||||||||||||  ||||| ||||||||||||||  |||||||          | |||||||||||||||| | |||||||||||||||||||    
T  41076595 gagtcctgataggtgaacatgcttaggtggcaacacactcttgtacaccccccatgtggcagggtagttttggtatttcaccttttaatgaagggtagtt 41076496  T
Q  234 tagtcaaaactcatataa 251  Q
    | |||||||| |||||||    
T  41076495 ttgtcaaaacccatataa 41076478  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 42009285 - 42009169
Alignment:
Q  144 gagtcctgataggtgaacacacttagctggcaacacactctgataca--cccatg-------gtagttttggtattttatcttttaatgaagggtagttt 234  Q
    |||||||||||||||||||  ||||| ||||||||||||||  ||||  ||||||       ||||||| ||||||| | ||||||||||||||||||||    
T  42009285 gagtcctgataggtgaacatgcttaggtggcaacacactcttgtacatccccatgtggcagggtagtttcggtatttcaccttttaatgaagggtagttt 42009186  T
Q  235 agtcaaaactcatataa 251  Q
     |||||||| |||||||    
T  42009185 tgtcaaaacccatataa 42009169  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 6102022 - 6102073
Alignment:
Q  206 gtattttatcttttaatgaagggtagtttagtcaaaactcatataaaccttg 257  Q
    |||||| |||||||||||||| ||||||| |||||||| |||||||||||||    
T  6102022 gtatttcatcttttaatgaagagtagttttgtcaaaacccatataaaccttg 6102073  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 6100982 - 6101031
Alignment:
Q  144 gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc 193  Q
    |||| |||||||||||||||| |||||||||||||| | || ||||||||    
T  6100982 gagtgctgataggtgaacacatttagctggcaacacccccttatacaccc 6101031  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 31047240 - 31047199
Alignment:
Q  216 ttttaatgaagggtagtttagtcaaaactcatataaaccttg 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  31047240 ttttaatgaagggtagttttgtcaaaacccatataaaccttg 31047199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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