View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21458_high_9 (Length: 325)
Name: NF21458_high_9
Description: NF21458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21458_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 48 - 297
Target Start/End: Complemental strand, 39522119 - 39521870
Alignment:
| Q |
48 |
tcatcaaacaaacacaattttcctccctcactatgccaacctttcacttccacacaattcaacgctctatctttctacttgcnnnnnnncttcaattctc |
147 |
Q |
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||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
39522119 |
tcatcaaacaaacacaattttcctctctcaccatgtcaacctttcacttccacacaattcaacgctctatctttctccttgctttttttcttcaattctc |
39522020 |
T |
|
| Q |
148 |
atcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataacaaccattatatt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |
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| T |
39522019 |
atcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataacaacctttatatt |
39521920 |
T |
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| Q |
248 |
ggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521919 |
ggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactc |
39521870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 137 - 291
Target Start/End: Complemental strand, 39576675 - 39576521
Alignment:
| Q |
137 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca |
236 |
Q |
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||||||||||||||| |||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| | |
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| T |
39576675 |
cttcaattctcatcactacacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataaga |
39576576 |
T |
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| Q |
237 |
accattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaag |
291 |
Q |
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| T |
39576575 |
atctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaag |
39576521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 39544820 - 39544682
Alignment:
| Q |
137 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca |
236 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||||||||||| |
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| T |
39544820 |
cttcaattcgcatcattacaatttccctcactcggatacgatcaccaagacacatacttcatcaattgcggatcagatattgacgtgaatgaaaataaca |
39544721 |
T |
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| Q |
237 |
accattatattggtgaatcaaaccatgcttacccgaaaa |
275 |
Q |
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||| |||||||||||||||||||| | ||||||| |||| |
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| T |
39544720 |
acctttatattggtgaatcaaaccctacttacccaaaaa |
39544682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 39581216 - 39581075
Alignment:
| Q |
137 |
cttcaattctcatcattacaattcccctcactcggat---acgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaata |
233 |
Q |
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||||||||||||||||||||||| |||| ||||||| | |||| ||| ||||||||||||||||||| ||||||||| | || || ||||| || |
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| T |
39581216 |
cttcaattctcatcattacaattttcctcgctcggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgttactgaaagta |
39581117 |
T |
|
| Q |
234 |
acaaccattatattggtgaatcaaaccatgcttacccgaaaa |
275 |
Q |
| |
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||||| |||||||||||||||||||| | |||| ||||||| |
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| T |
39581116 |
acaacgtttatattggtgaatcaaaccctacttatccgaaaa |
39581075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 39525529 - 39525453
Alignment:
| Q |
138 |
ttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat |
214 |
Q |
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||||||||||||||||| | |||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| |
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| T |
39525529 |
ttcaattctcatcattatacttcccctcgctcggatacgatgaacaagacatatacttcatcagttgtggatcagat |
39525453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 39581927 - 39581850
Alignment:
| Q |
137 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat |
214 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||| |||||||| |||| |
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| T |
39581927 |
cttcaattctcatcattacagttcgcctcacttggatacgatgaccaagacatatacttcatcagttgtggataagat |
39581850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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