View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21459_high_1 (Length: 400)
Name: NF21459_high_1
Description: NF21459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21459_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 181 - 384
Target Start/End: Complemental strand, 36449471 - 36449268
Alignment:
| Q |
181 |
cttcatttctttttctttcctttccatcatcaactgatccggtggtggtttcctccgcgaagaacccgaatcaaattagacgcatttctcctaactttct |
280 |
Q |
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| T |
36449471 |
cttcatttctttttctttcctttccatcatcaactgatcctgtggtggtttcctccgcgaagaacccgaatcaaattagacgcatttctcctaactttct |
36449372 |
T |
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| Q |
281 |
cactatcatcctctaccatcccaatacaaatttccaaaaccccttcttgcagagtcatcataagtatttccttgctatgcaaacaaacaaaagtaagtgc |
380 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36449371 |
cactattatcctctaccatcccaatacaaatttccaaaaccccttcttgcagagtcatcataagtatttccttgctatgcaaacaaaccaaagtaagtgc |
36449272 |
T |
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| Q |
381 |
caac |
384 |
Q |
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|||| |
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| T |
36449271 |
caac |
36449268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 36449637 - 36449529
Alignment:
| Q |
8 |
acatcatcattattcaatatacaaaagaaccctatcattgacacattcacaacaaaaatttgatcttcttttcattttgtacaatggacccacccaacaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36449637 |
acatcatcattattcaatatacaaaagaaccctatcattgacacattcacaacaaaaatttgatcttcttttcattttgtacaatggacccacccaacaa |
36449538 |
T |
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| Q |
108 |
ggcagaccc |
116 |
Q |
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| T |
36449537 |
ggcagaccc |
36449529 |
T |
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