View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21459_high_1_N (Length: 620)
Name: NF21459_high_1_N
Description: NF21459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21459_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 29461312 - 29461791
Alignment:
| Q |
1 |
attgtggccttaatagaggaagtttcttagcatgggaagatctaagagttatgttgccaaattttgggaaaggaccaaccaagaggttacttaatgggtt |
100 |
Q |
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| T |
29461312 |
attgtggccttaatagaggaagtttcttagcatgggaagatctaagagttatgttgccaaattttgggaaaggaccaaccaagaggttacttaatgggtt |
29461411 |
T |
|
| Q |
101 |
aaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaatccactttgcttgatacacttgcaggttcataactagtt |
200 |
Q |
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| T |
29461412 |
aaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaatccactttgcttgatacacttgcaggttcataactagtt |
29461511 |
T |
|
| Q |
201 |
acttcattcttattatgctgctatatatgtttctttgtttgtgacagtac---nnnnnnnncttatgctatgacttgaattgcccaaacatgagtaaatt |
297 |
Q |
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| T |
29461512 |
acttcattcttattatgctgctatatatgtttctttgtttgtgacagtacttttttttttttttatgctatgacttgaattgcccaaacatgagtaaatt |
29461611 |
T |
|
| Q |
298 |
caaggtttttcaaaaaccacaatatcacgttatttggaagaagaaaaaatgttcaaccttttattggtttgatggtttctcactatggtggtacacaaat |
397 |
Q |
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| T |
29461612 |
caaggttttttaaaaaccacaatatcatgttatttggaagaagaaaaaatgttcaaccttttattggtttgatggtttctcactatggtggtacacaaat |
29461711 |
T |
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| Q |
398 |
tcttttattcaattaggattatgtataattaaatgtaccaaaattggatatttcccttttgagctttctttctgagactg |
477 |
Q |
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| T |
29461712 |
tcttttattcaattaggattatgtataattaaatgtaccaaaattggatatttcccttttgagctttctttctgagactg |
29461791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 29426069 - 29426256
Alignment:
| Q |
25 |
tcttagcatgggaagatctaagagttatgttgccaaattttgggaaaggaccaaccaagaggttacttaatgggttaaatggttttgctgagcctggtag |
124 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||| |
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| T |
29426069 |
tcttagcatgggaggatgtaagagttatgttgccaaattttgggaaaggaccaactaaaaggttacttaatggtcttaatggttttgctgagcctggtag |
29426168 |
T |
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| Q |
125 |
aatcatggctattatgggtccttctggctctggaaaatccactttgcttgatacacttgcaggttcataactagttacttcattctta |
212 |
Q |
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| T |
29426169 |
aatcatggctattatgggtccttctggctctggaaaatccactttgcttgatacacttgcaggttcgttaaaagttacctcattctta |
29426256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 552 - 613
Target Start/End: Original strand, 29461866 - 29461927
Alignment:
| Q |
552 |
ttcaactcaattctggtgacactaacctaagggcccttgttttaatggcttggtctgtggtg |
613 |
Q |
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| T |
29461866 |
ttcaactcaattctggtgacactaacctaagggcccttgttttaatggtttggtctgtggtg |
29461927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 29476603 - 29476656
Alignment:
| Q |
123 |
agaatcatggctattatgggtccttctggctctggaaaatccactttgcttgat |
176 |
Q |
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| T |
29476603 |
agaatcatggctattatgggtccatctggttctggaaaatctactcttcttgat |
29476656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 37290237 - 37290273
Alignment:
| Q |
130 |
tggctattatgggtccttctggctctggaaaatccac |
166 |
Q |
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| T |
37290237 |
tggctattatgggtccatctggctctggaaaatccac |
37290273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 36068327 - 36068412
Alignment:
| Q |
81 |
aagaggttacttaatgggttaaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaatccac |
166 |
Q |
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|||| ||||||| |||| ||| |||||||||||| |||||||| ||||||||| |||||||||||||||||| ||| ||| |||| |
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| T |
36068327 |
aagaagttacttgatggtgtaactggttttgctgaacctggtaggatcatggctgttatgggtccttctggctgtggcaaaaccac |
36068412 |
T |
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