View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21459_high_2 (Length: 360)
Name: NF21459_high_2
Description: NF21459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21459_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 11104557 - 11104211
Alignment:
| Q |
13 |
gagagtgtaactaaatctgtagtgttgagaccttgaacaagaaatgaagctttaagttgatccaatgtggagaagggtccaggaaggttttgatttgcaa |
112 |
Q |
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| T |
11104557 |
gagagtgtaactaaatctgtagtgttgagaccttgaacaagaaatgaagctttaagttgatccaatgtggagaagggtccgggaaggttttgatttgcaa |
11104458 |
T |
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| Q |
113 |
gagttatgttggcagttaagctatcccttcttcccaatggaattggccatgagggacctcctccctgttcatagatcaatatatattagatgattttaag |
212 |
Q |
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| T |
11104457 |
gagttatgttggcggttaagctatcccttcttcccaatggaattggccatgagggacctcctccctgttcatagatcaatatatattagatgattttaag |
11104358 |
T |
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| Q |
213 |
atggatatttgagaagcaaatattactagtgaccatataaagtttatgaaattaaaaacataccagaatagaagatacttcagctgcaatagtaagaata |
312 |
Q |
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| T |
11104357 |
atggatatttgagaagcaaaaattactagtgaccatataaagtttatgaaattaaaaacataccagaatagaagatacttcagctgcaatagtaagaata |
11104258 |
T |
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| Q |
313 |
tcagcacaagaaacagtgttaggacattcttcttcaactgctgtctt |
359 |
Q |
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| T |
11104257 |
tcagcacaagaaacagtgttaggacattcttcttcaactgctgtctt |
11104211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 11097534 - 11097351
Alignment:
| Q |
13 |
gagagtgtaactaaatctgtagtgttgagaccttgaacaagaaatgaagctttaagttgatccaatgtggagaagggtccaggaaggttttgatttgcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | ||||||||||||||||||| |
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| T |
11097534 |
gagagtgtaactaaatctgtagtgttgagaccttgaacaagaaatgcagctttaagttgatccaatgtgaaaaagggtgctggaaggttttgatttgcaa |
11097435 |
T |
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| Q |
113 |
gagttatgttggcagttaagctatcccttcttcccaatggaattggccatgagggacctcctccctgttcatagatcaatatat |
196 |
Q |
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| | | ||| || ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
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| T |
11097434 |
gggcttggtttgctgttaaactatcccttcttcccaatggaatttgccatgagggacctcctccctgttcataaaccaatatat |
11097351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 11095844 - 11095752
Alignment:
| Q |
267 |
aaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtctt |
359 |
Q |
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| T |
11095844 |
aaaacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaacagtggctggacattcattttcaactgctgtctt |
11095752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 11171372 - 11171303
Alignment:
| Q |
269 |
aacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca |
338 |
Q |
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| T |
11171372 |
aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggaca |
11171303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 11177375 - 11177309
Alignment:
| Q |
272 |
ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca |
338 |
Q |
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|||||||| |||||||| |||||| | || | ||||||||||||||||||||||||||||||||| |
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| T |
11177375 |
ataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggaca |
11177309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 11155760 - 11155695
Alignment:
| Q |
273 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca |
338 |
Q |
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|||||||| ||| ||| ||| ||| |||| || ||||||||||||||||||||| ||||||||||| |
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| T |
11155760 |
taccagaacagaggatgcttgagcagcaagagcaagaatatcagcacaagaaactgtgttaggaca |
11155695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 11145444 - 11145381
Alignment:
| Q |
272 |
ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttagg |
335 |
Q |
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||||||| |||| |||| |||||| |||| || ||||||||||||||||||||| |||||||| |
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| T |
11145444 |
ataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagg |
11145381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 11118296 - 11118243
Alignment:
| Q |
273 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaac |
326 |
Q |
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|||||||| ||||||||| ||||||||| || |||||||||||||||||||| |
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| T |
11118296 |
taccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaac |
11118243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 11137111 - 11137079
Alignment:
| Q |
306 |
aagaatatcagcacaagaaacagtgttaggaca |
338 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
11137111 |
aagaatatcagcacaagaaactgtgttaggaca |
11137079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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