View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21459_low_2 (Length: 345)
Name: NF21459_low_2
Description: NF21459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21459_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 31965169 - 31964858
Alignment:
| Q |
13 |
aatatctcaaattttaccctcagatttcatggctatttcaagttgagaaatatgcattggtcataccttccgtttcaattggttttccaaaataatagta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31965169 |
aatatctcaaattttaccctcagatttcatggctatttcaagttgaggaatatgcattggtcataccttccgtttcaattggttttccaaaataatagta |
31965070 |
T |
|
| Q |
113 |
gagccgccccggaactttaggcaaaattccaggcaaatacacttgttgatttgccacctcaccgtcaacaccagccctagtttcacaatgtataagagac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31965069 |
gagccgccccggaactttaggcaaaattccaggcaaatacacttgttgatttgccacctcaccgtcaacaccagccctagtttcacaatgtataagagac |
31964970 |
T |
|
| Q |
213 |
aaaaatgatgcatatgtatatatcacatatagaaaagatggaagagaagaagaaaaaatgtatatacaaaatgttctgtttagtatgaaacaacaaaaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31964969 |
aaaaatgatgcatatgtatatatcacatatagaaaagatggaaaagaa----aaaaaatgtatatacaaaatgttctgtttagtatgaaacaacaaaaag |
31964874 |
T |
|
| Q |
313 |
caaatttacatacctc |
328 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31964873 |
caaatttacatacctc |
31964858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 31950889 - 31950696
Alignment:
| Q |
13 |
aatatctcaaattttaccctcagatttcatggctatttcaagttgagaaatatgcattggtcataccttccgtttcaattggttttccaaaataatagta |
112 |
Q |
| |
|
|||| ||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31950889 |
aatagctcaaattttaccgtcacatttcacggctatttcatgttgagaaatatgcattggacataccttctgtttcaattggttttccaaaataatagta |
31950790 |
T |
|
| Q |
113 |
gagccgccccggaactttaggcaaaattccaggcaaatacacttgttgatttgccacctcaccgtcaacaccagccctagtttcacaatgtata |
206 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
31950789 |
gaaccggcccggaactttgggcaaaattccaggcagatacacttgttgatttgccacctcaccgtcaacatcagccctagtttcaaaatgtata |
31950696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 31976826 - 31976725
Alignment:
| Q |
74 |
cataccttccgtttcaattggttttccaaaataatagtagagccgccccggaactttaggcaaaattccaggcaaatacacttgttgatttgccacctca |
173 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
31976826 |
catacctgctgtttcaattggttttccaaaataatagtagaaccggcctggaactttaggcaaaattccaggcatatgcacttgttgatttgccacctca |
31976727 |
T |
|
| Q |
174 |
cc |
175 |
Q |
| |
|
|| |
|
|
| T |
31976726 |
cc |
31976725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University