View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2145_high_1 (Length: 712)
Name: NF2145_high_1
Description: NF2145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2145_high_1 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 687; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Complemental strand, 28608431 - 28607729
Alignment:
| Q |
1 |
gaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608431 |
gaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacatt |
28608332 |
T |
|
| Q |
101 |
tatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608331 |
tatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatc |
28608232 |
T |
|
| Q |
201 |
aaaaattaaacatttataattttgaagtgtgagttattaaaaaaggtagtaaataataattttcaagtagatcaataccattctatcccatgaaatgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608231 |
aaaaattaaacatttataattttgaagtgtgagttattaaaaaagggagtaaataataattttcaagtagatcaataccattctatcccatgaaatgttg |
28608132 |
T |
|
| Q |
301 |
agcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608131 |
agcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgc |
28608032 |
T |
|
| Q |
401 |
ttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccacttcc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28608031 |
ttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccactgcc |
28607932 |
T |
|
| Q |
501 |
aataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtataca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28607931 |
aataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataca |
28607832 |
T |
|
| Q |
601 |
aatgcaccaacaacgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcat |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607831 |
aatgcaccaacaacgtcatgtgtaccaagaatatcagttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcat |
28607732 |
T |
|
| Q |
701 |
ctc |
703 |
Q |
| |
|
||| |
|
|
| T |
28607731 |
ctc |
28607729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 281 - 417
Target Start/End: Original strand, 7589432 - 7589567
Alignment:
| Q |
281 |
ttctatcccatgaaatgttgagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaa |
380 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| ||||||| || ||||| ||||||||| ||||||||||||||||| || ||| | |||||| || |
|
|
| T |
7589432 |
ttctatcccaatcaatgttgagcattatcaacgcagcgacacctttagtattaagaagcaagtctaaagcaaaaccatct-gaacacgtacgccaaaaaa |
7589530 |
T |
|
| Q |
381 |
gaaagtggaaaacaaagtgcttagaatctttagaaca |
417 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||| ||||| |
|
|
| T |
7589531 |
gaaactggcaaacaaagtgtttagaatcttttgaaca |
7589567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 518 - 703
Target Start/End: Original strand, 7589668 - 7589852
Alignment:
| Q |
518 |
ctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtc |
617 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||||||| ||| | | |||||||||| || |
|
|
| T |
7589668 |
ctagaaacacaccaccaaaatcattggtcgttgacgtgaccatgtcagcaaa-ttactgtgtggtaaaatcaaccggtacattgaagcaccaacaatgtt |
7589766 |
T |
|
| Q |
618 |
atgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
703 |
Q |
| |
|
| |||| || ||||||| |||||||| ||| | ||||| |||||| |||||||||| |||||||| ||| ||||| ||||| |
|
|
| T |
7589767 |
aggtgtgccgagaatatatgttatgtgggagcgataaaaaattcccatgaccacaaagagatattggttatcattccattaatctc |
7589852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 703
Target Start/End: Original strand, 438473 - 439174
Alignment:
| Q |
1 |
gaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |||| |||||||| |||||||||||||| |||| |
|
|
| T |
438473 |
gaacacatgctagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagcttattattctcaaatctctttctgggcttgtatatggcatt |
438572 |
T |
|
| Q |
101 |
tatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatc |
200 |
Q |
| |
|
|||| ||||| |||||||||||||||| || |||||| || ||||||||| |||| |||||||||| || ||||| || |||||||| |||||| |
|
|
| T |
438573 |
gatgacaggagccaccactatagtcattagaagaactgcagaggttaaaacagcatatgttggtggagaaagaatctacaaatacacattag--caaatc |
438670 |
T |
|
| Q |
201 |
aaaaattaaacattt-ataattttgaagtgtgagttattaaaaaaggtagtaaataataattttcaagtagatcaataccattctatcccatgaaatgtt |
299 |
Q |
| |
|
||| ||| ||| ||| |||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| || |
|
|
| T |
438671 |
aaagattgaactttttataattttgacgttagcgttattaaaaaagggagtaaataataattttcaagtagatcaataccgatctatcccaggaaatatt |
438770 |
T |
|
| Q |
300 |
gagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtg |
399 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
438771 |
gagcattatcagtgcaacgacacccttggtattgagaagcaagcctagagcaaaaccatcttgagcacgcatgccaaagaagaaagtggcaaacaaagtg |
438870 |
T |
|
| Q |
400 |
cttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccacttc |
499 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||||||||| ||| ||| |||| ||| |||||| || | ||||||||| ||||| | | |
|
|
| T |
438871 |
cttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgagttttgatccattgc |
438970 |
T |
|
| Q |
500 |
caataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatac |
599 |
Q |
| |
|
|| |||||| || ||||| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
438971 |
cacaaaagtagatcggtgcaagaaagccaataccaaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataa |
439070 |
T |
|
| Q |
600 |
aaatgcaccaacaacgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattca |
699 |
Q |
| |
|
||| || |||||||| |||||||| |||||| |||| | |||| |||||||||| | ||| ||||| | ||||| |||| ||||||| ||||||||||| |
|
|
| T |
439071 |
aaaagccccaacaacatcatgtgtgccaagagtatcggctatgaatgagaaaaccataaggcccataaagacaaaaactagttggttagcatcccattca |
439170 |
T |
|
| Q |
700 |
tctc |
703 |
Q |
| |
|
|||| |
|
|
| T |
439171 |
tctc |
439174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 6e-73; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 13659802 - 13659349
Alignment:
| Q |
1 |
gaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacatt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| | ||||| ||||||||||| |
|
|
| T |
13659802 |
gaacacatgtaagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagcttgttctgctcaaatctctttctcggcttatatatgacatt |
13659703 |
T |
|
| Q |
101 |
tatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatc |
200 |
Q |
| |
|
|| |||||| ||||||||||||||||||| ||||| | ||||||||| ||| ||| ||||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
13659702 |
gattgtgggaggcaccactatagtcattaaaagtactgcagcagttaaaacagcatgggtgggtggagaaagaatctgcaatgacacattataacaaatc |
13659603 |
T |
|
| Q |
201 |
aaaaattaaacatttataattttgaagtgtgagttattaaaaa----aggtagtaaataataattttcaagtagatcaataccattctatcccatgaaat |
296 |
Q |
| |
|
||| ||||| ||||||||||| | ||||| |||||||| | |||||||||||| || |||||||| |||||||||| || | |
|
|
| T |
13659602 |
aaagtttaaattgatataattttgacttatgagtaattaaaaatcatatagagtaaataataa--------tatatcaatacttttctatcccaagatgt |
13659511 |
T |
|
| Q |
297 |
gttgagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaa |
396 |
Q |
| |
|
|||||||||||| | ||||| | |||||||||||||||||| || ||| | ||| |||| ||| |||||||||| ||||| |||||||| | ||||||| |
|
|
| T |
13659510 |
gttgagcattatcagtgcaagggcaccctttgtattgagaatcatgccgagagctaaactgtcttgagtacgcataccaaaaaagaaagtagcaaacaaa |
13659411 |
T |
|
| Q |
397 |
gtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttgg |
458 |
Q |
| |
|
||||||| |||||| ||||||| | ||||| |||||| | |||||| ||||||||| |||| |
|
|
| T |
13659410 |
gtgcttaaaatcttcggaacacataacaagattataataacaagtgttaagggccaagttgg |
13659349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 514 - 703
Target Start/End: Complemental strand, 13659293 - 13659104
Alignment:
| Q |
514 |
ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaa |
613 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
13659293 |
ggtgctagaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa |
13659194 |
T |
|
| Q |
614 |
cgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
703 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||| ||||||||| |||||||| | ||||| ||||| ||| | | ||||||||||| |
|
|
| T |
13659193 |
tgtcttgtgttccaagaatatctgttatgcatgagcaaacaaaaatccccatcacaagaaagagtaattctttatcgttccattcatctc |
13659104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 520 - 703
Target Start/End: Complemental strand, 13651801 - 13651618
Alignment:
| Q |
520 |
agaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcat |
619 |
Q |
| |
|
|||||| | |||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || || |||| || | |
|
|
| T |
13651801 |
agaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatctt |
13651702 |
T |
|
| Q |
620 |
gtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
703 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| ||||||| | ||||||| | ||||| |||||| ||| ||||||||||||||| |
|
|
| T |
13651701 |
gtgtgccaagaatacctgttatatatgagcaaacaaacatccccatcagaagaaagagtaattgtttatcatcccattcatctc |
13651618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 296 - 452
Target Start/End: Complemental strand, 13652025 - 13651869
Alignment:
| Q |
296 |
tgttgagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaa |
395 |
Q |
| |
|
||||||||||||| ||||||| | ||||||| |||||||||| || ||||| |||||||| ||| |||||||||||||||| || ||||||| |||||| |
|
|
| T |
13652025 |
tgttgagcattatcaatgcaagggcacccttagtattgagaatcatgcctagagcaaaactgtcttgagtacgcatgccaaaaaataaagtggtaaacaa |
13651926 |
T |
|
| Q |
396 |
agtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggcca |
452 |
Q |
| |
|
|||||||| ||||||| ||||||| | ||||| ||||| | |||||| |||||||| |
|
|
| T |
13651925 |
agtgcttaaaatctttggaacacataacaagattataagcacaagtgttaagggcca |
13651869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13652302 - 13652060
Alignment:
| Q |
1 |
gaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacatt |
100 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||| |||| |
|
|
| T |
13652302 |
gaacacatgttagaatcctaagttctgcatcaagtctaagcttttgtatagtctttagcttgttctgctcaaatctcttcctgggcttatatatcgcatt |
13652203 |
T |
|
| Q |
101 |
tatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatc |
200 |
Q |
| |
|
|| | | ||| ||||| ||||||||||||| || || | | ||||||| ||| || ||| || || |||||| ||||| | ||||||||||||| |
|
|
| T |
13652202 |
aataacgagaggaaccacaatagtcattaaaaagaccgcagccgataaaacagcatgagtgggttcagaaaaaatctgcaatgagaaattataacaaatc |
13652103 |
T |
|
| Q |
201 |
aaaaattaaacatttataattttgaagtgtgagttattaaaaa |
243 |
Q |
| |
|
|||| ||||| |||||||||||| ||||| |||||||| |
|
|
| T |
13652102 |
aaaatttaaattgatataattttgaatcttgagtaattaaaaa |
13652060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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