View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2145_high_4 (Length: 330)
Name: NF2145_high_4
Description: NF2145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2145_high_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 31131636 - 31131947
Alignment:
| Q |
19 |
gaagcctccaaaaaccaaatgattctccctgattttcaagatattctccaacgttttacgtttgataatatttgcataattgcatttggattcgacccgg |
118 |
Q |
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| T |
31131636 |
gaagcctccaaaaactaaatgatcctccctgattttcaagatattctccaacgttttacgtttgataatatttgcataatcacatttggattcgatccgg |
31131735 |
T |
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| Q |
119 |
agtatctcctcccttctcttcccgaaatcgcgtttgtgaaagcttttgacgatagcacacgaatcagcggcgacaggataaacgctgctgttccattttt |
218 |
Q |
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| T |
31131736 |
aatatctcatcccttctcttcccgaaatcgcgtttgtcaaagcttttgacgatagcacacgaatcagcggcgacaggataaacgctgatgttccattttt |
31131835 |
T |
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| Q |
219 |
atggaaagtgaaaaaattcctaaacattggaaccaagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccacaaaaattgttagggaaaag |
318 |
Q |
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| T |
31131836 |
atggaaagtgaaaaaattcctaaacattggacccgagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccacaaaaattgttagggaaaag |
31131935 |
T |
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| Q |
319 |
aaaaaagagctt |
330 |
Q |
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| T |
31131936 |
aaaaaagagctt |
31131947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 40 - 330
Target Start/End: Original strand, 31126949 - 31127239
Alignment:
| Q |
40 |
attctccctgattttcaagatattctccaacgttttacgtttgataatatttgcataattgcatttggattcgacccggagtatctcctcccttctcttc |
139 |
Q |
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| T |
31126949 |
attctcgctaattttcaagatattctccaacgtttcacgtttgataatatttgcataattgcgtttggatttgatccggagtatctcctcccttctcttc |
31127048 |
T |
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| Q |
140 |
ccgaaatcgcgtttgtgaaagcttttgacgatagcacacgaatcagcggcgacaggataaacgctgctgttccatttttatggaaagtgaaaaaattcct |
239 |
Q |
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| T |
31127049 |
ccgaaacagcgtttgttaaagcctttgatgatagctcacgaatcagcagtgagaggttaaatgcagcgattccatttctatggaaagtgaagaaaatatt |
31127148 |
T |
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| Q |
240 |
aaacattggaaccaagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccacaaaaattgttagggaaaagaaaaaagagctt |
330 |
Q |
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| T |
31127149 |
aaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcgccacaagaatcgttagggaaaagaaaaaggagctt |
31127239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 31077610 - 31077921
Alignment:
| Q |
19 |
gaagcctccaaaaaccaaatgattctccctgattttcaagatattctccaacgttttacgtttgataatatttgcataattgcatttggattcgacccgg |
118 |
Q |
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| T |
31077610 |
gaagcttccaaaaaccaaacggttctgcttgattttcaagatatcctccaacgttttacgttcgatagtatctgcagaatcgcgtttggattcgatccgg |
31077709 |
T |
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| Q |
119 |
agtatctcctcccttctcttcccgaaatcgcgtttgtgaaagcttttgacgatagcacacgaatcagcggcgacaggataaacgctgctgttccattttt |
218 |
Q |
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| T |
31077710 |
agtacttacattcttctcttcccaaaaccatgtttgtaaaagcctttgacgatagctcactaattagcagtgtgagatttaacgctgcgattccattgat |
31077809 |
T |
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| Q |
219 |
atggaaagtgaaaaaattcctaaacattggaaccaagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccacaaaaattgttagggaaaag |
318 |
Q |
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| T |
31077810 |
atggaaagtgaagaaaatattaaacatagggatcgagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttagggaaaag |
31077909 |
T |
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| Q |
319 |
aaaaaagagctt |
330 |
Q |
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| T |
31077910 |
aaaaaagagctt |
31077921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 327
Target Start/End: Original strand, 31128768 - 31128916
Alignment:
| Q |
179 |
gaatcagcggcgacaggataaacgctgctgttccatttttatggaaagtgaaaaaattcctaaacattggaaccaagcgacggttgaaagaagctgtcgc |
278 |
Q |
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| T |
31128768 |
gaatcagcagcgagaggttaaatgatgccattccatttctatggaaagtgaagaaaatattaaatgttggatccaagaaacggctaaaagaagccgtcgt |
31128867 |
T |
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| Q |
279 |
tgaagtaagggggctcgccacaaaaattgttagggaaaagaaaaaagag |
327 |
Q |
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| T |
31128868 |
tgaagtaagaggactcgccacaagaatcgttagggaaaagaaaaaagag |
31128916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 38655083 - 38655148
Alignment:
| Q |
48 |
tgattttcaagatattctccaacgttttacgtttgataatatttgcataattgcatttggattcga |
113 |
Q |
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| T |
38655083 |
tgatttccaagacattctccaacgtttcacgtttgacaatatctgcaaaatcgcgtttggtttcga |
38655148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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