View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2145_high_6 (Length: 268)
Name: NF2145_high_6
Description: NF2145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2145_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 944885 - 945068
Alignment:
| Q |
18 |
agcattgaccccaattaaggaagaatcattgtctaatggtcatattgatcaacttcaagtagaatgtaaagtgattgatggtcaagaaaaggttggtgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
944885 |
agcattgaccccaattaaggaagaatcattgtctaatggtcatattgatcaacttcaagtagaatgtaaagtgattgatggtcaagaaaaggttggtgta |
944984 |
T |
|
| Q |
118 |
ttttctaatatataatttactttatt-----------------tagtatatataatttactttatgtaaaagttcttgtattgt |
184 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
944985 |
ttttctaatatataatttactttatttttttcaatttggctcctagtatatataatttactttatgtaaaagttcttgtattgt |
945068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 945152 - 945235
Alignment:
| Q |
185 |
ttatactttcaagtgtctcacaggtagtagaaaagccaaacattatgaaacatctgaaaatattaggtgacaaaatcaaattga |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
945152 |
ttatactttcaagtgtctcacaggtagtagaaaagccaaacattatgaaacatctgaaaatattaggtgacaaaatcaaattga |
945235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 4097903 - 4097984
Alignment:
| Q |
59 |
atattgatcaacttcaagtagaatgtaaagtgattgatggtcaagaaaaggttggtgtattttctaatatataatttacttt |
140 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
4097903 |
atattggtcaacttcaagtagaatgtaatgtgattgatggtcaagaagaggttggtgtattttttaatataaaatttacttt |
4097984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 4098133 - 4098202
Alignment:
| Q |
189 |
actttcaagtgtctcacaggtagtagaaaagccaaacattatgaaacatctgaaaatattaggtgacaaa |
258 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
4098133 |
actttcaagtgtctcacaggtaccagaaaaggcaaacattatgaaacatctaaaaatattaagcgacaaa |
4098202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University