View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2145_low_12 (Length: 226)

Name: NF2145_low_12
Description: NF2145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2145_low_12
NF2145_low_12
[»] chr4 (10 HSPs)
chr4 (1-226)||(27292964-27293189)
chr4 (1-226)||(4919033-4919257)
chr4 (1-223)||(42976352-42976573)
chr4 (26-93)||(45989609-45989676)
chr4 (26-103)||(20133410-20133487)
chr4 (1-93)||(42069020-42069112)
chr4 (1-103)||(55919361-55919463)
chr4 (26-93)||(47031458-47031525)
chr4 (32-103)||(15531216-15531287)
chr4 (1-103)||(28679508-28679610)
[»] chr3 (11 HSPs)
chr3 (1-226)||(50650366-50650591)
chr3 (1-190)||(12938455-12938644)
chr3 (1-223)||(31658794-31659015)
chr3 (48-213)||(33216676-33216841)
chr3 (36-208)||(29833311-29833483)
chr3 (26-103)||(39833230-39833307)
chr3 (50-103)||(36950181-36950234)
chr3 (32-103)||(29703541-29703612)
chr3 (5-103)||(5232946-5233044)
chr3 (5-103)||(20104322-20104420)
chr3 (32-103)||(53282294-53282365)
[»] chr1 (6 HSPs)
chr1 (1-225)||(27286183-27286407)
chr1 (1-223)||(52385788-52386010)
chr1 (26-213)||(39241589-39241773)
chr1 (1-103)||(12981521-12981623)
chr1 (1-103)||(45348242-45348344)
chr1 (27-93)||(45325635-45325701)
[»] chr7 (8 HSPs)
chr7 (1-226)||(19436690-19436915)
chr7 (1-226)||(29833919-29834144)
chr7 (1-103)||(45972423-45972525)
chr7 (75-191)||(29258440-29258556)
chr7 (26-93)||(6442636-6442703)
chr7 (26-92)||(34094118-34094184)
chr7 (26-103)||(29243380-29243455)
chr7 (5-103)||(47327942-47328040)
[»] chr2 (11 HSPs)
chr2 (1-226)||(14096274-14096499)
chr2 (1-116)||(18977085-18977200)
chr2 (1-103)||(14810089-14810191)
chr2 (1-103)||(15330735-15330837)
chr2 (1-103)||(37261671-37261773)
chr2 (1-103)||(16429864-16429966)
chr2 (1-103)||(17690604-17690706)
chr2 (157-213)||(18977216-18977272)
chr2 (5-103)||(37078947-37079045)
chr2 (50-103)||(7089225-7089278)
chr2 (50-103)||(33755093-33755146)
[»] chr6 (4 HSPs)
chr6 (1-208)||(12938678-12938885)
chr6 (26-205)||(28138039-28138217)
chr6 (1-223)||(33694802-33695023)
chr6 (69-133)||(14532051-14532115)
[»] chr5 (7 HSPs)
chr5 (1-208)||(30624900-30625107)
chr5 (1-190)||(41413417-41413606)
chr5 (1-190)||(1828466-1828655)
chr5 (1-190)||(40313931-40314120)
chr5 (29-206)||(31482071-31482248)
chr5 (1-103)||(24788298-24788400)
chr5 (50-103)||(39884696-39884749)
[»] chr8 (6 HSPs)
chr8 (29-216)||(13802682-13802869)
chr8 (29-153)||(23613574-23613699)
chr8 (29-95)||(23614272-23614338)
chr8 (1-103)||(531684-531786)
chr8 (26-103)||(30945452-30945527)
chr8 (50-103)||(3879490-3879543)
[»] scaffold0166 (1 HSPs)
scaffold0166 (1-103)||(30681-30783)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27293189 - 27292964
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27293189 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 27293090  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27293089 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatctgattggctgaattaaa 27292990  T
Q  201 cgacttcatcgaaaaattcaattccc 226  Q
    |||||||| ||||||| |||||||||    
T  27292989 cgacttcaccgaaaaagtcaattccc 27292964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4919257 - 4919033
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  4919257 aaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaat 4919158  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||    
T  4919157 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaatt-aa 4919059  T
Q  201 cgacttcatcgaaaaattcaattccc 226  Q
    |||||||| ||||||| |||||||||    
T  4919058 cgacttcaccgaaaaagtcaattccc 4919033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42976573 - 42976352
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| |||||||||  |  | ||||||||||||||| ||| ||||||||||| |||||||||||||||  ||||||||||||||||||| | |||     
T  42976573 aaagaggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcataaaag 42976474  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||||||||||||||||| || |||| |||||||||||||||||| ||||| |  | |||| ||| |||||||  |||||||||||||||| |||||||||    
T  42976473 aaacttgtctatggtgggacttatggagcaagtgatccatattaaaatttat-tctacatgtgacgtgtcatctcttgaaatctgattggttgaattaaa 42976375  T
Q  201 cgacttcatcgaaaaattcaatt 223  Q
    ||||| ||||||| || ||||||    
T  42976374 cgactgcatcgaagaagtcaatt 42976352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 45989609 - 45989676
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||  |||||||||||||||||||    
T  45989609 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 45989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 20133487 - 20133410
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  20133487 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42069020 - 42069112
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    |||||||| | ||||||| ||  | ||||||||||||||| ||| ||| ||||||||||||||||||| |||  |||||||||||||||||||    
T  42069020 aaagaggagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatc 42069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 55919361 - 55919463
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||  |||| ||| ||||||    
T  55919361 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaat 55919460  T
Q  101 aaa 103  Q
    |||    
T  55919461 aaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 47031458 - 47031525
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||| |||  |||||||||| ||||||||    
T  47031458 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatc 47031525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 15531216 - 15531287
Alignment:
Q  32 aatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||| |||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  15531216 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 15531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28679610 - 28679508
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||| ||||||||||||||||||| |||  |||| ||||  |||||||| | ||||    
T  28679610 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaaat 28679511  T
Q  101 aaa 103  Q
    |||    
T  28679510 aaa 28679508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 50650366 - 50650591
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50650366 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 50650465  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  50650466 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaa 50650565  T
Q  201 cgacttcatcgaaaaattcaattccc 226  Q
    |||||| | ||||||| |||||||||    
T  50650566 cgactttaccgaaaaagtcaattccc 50650591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 12938644 - 12938455
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  12938644 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 12938545  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattgg 190  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  12938544 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattgg 12938455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31658794 - 31659015
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| |||||||||  |  | ||||||||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||| | |||     
T  31658794 aaagaggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcataaaag 31658893  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||||||||||||||||| || |||| |||||||||||||||||| ||||| | || |||| |||||||||||  |||||||||||||||| |||||||||    
T  31658894 aaacttgtctatggtgggacttatggagcaagtgatccatattagaatttat-cctacatgtgatgtgtcatctcttgaaatctgattggttgaattaaa 31658992  T
Q  201 cgacttcatcgaaaaattcaatt 223  Q
    ||||| || |||| || ||||||    
T  31658993 cgactgcaccgaagaagtcaatt 31659015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 213
Target Start/End: Original strand, 33216676 - 33216841
Alignment:
Q  48 tgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattataa 147  Q
    ||||||| |||| ||||||| |||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||||||||    
T  33216676 tgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataa 33216775  T
Q  148 tttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgacttcatcgaa 213  Q
    ||||||   || || || |||||||  ||| |||||||||||||| | | ||||||||||| ||||    
T  33216776 tttgtcattacttaggacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaa 33216841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 29833483 - 29833311
Alignment:
Q  36 atgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtga 135  Q
    ||||| ||| ||||||||| |||| |||||| ||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| |||||||||    
T  29833483 atgtgaagatggtgtaccataataccatagaaaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtga 29833384  T
Q  136 tccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgacttca 208  Q
    |||||||||||||||||||  || | ||| |||||||  ||| |||||||||||| | | | |||||||||||    
T  29833383 tccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttca 29833311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 39833230 - 39833307
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  39833230 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 36950181 - 36950234
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||||||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  36950181 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 29703541 - 29703612
Alignment:
Q  32 aatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||| |||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  29703541 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 29703612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 5233044 - 5232946
Alignment:
Q  5 aggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||| |||||||||| |  | ||||||| ||||||| ||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| |||||||||    
T  5233044 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 20104420 - 20104322
Alignment:
Q  5 aggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||| |||||||||| |  | ||||||| | ||||| ||| | ||||||||||||||||| ||| |||  |||||||||| |||||||| |||||||||    
T  20104420 aggagagagaattggtactagaagaaaattaatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaaataaa 20104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 53282365 - 53282294
Alignment:
Q  32 aatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||| |||  || |||||||||||||||||||| ||  |||||||||| |||||||  |||||||||    
T  53282365 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaa 53282294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27286407 - 27286183
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27286407 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaat 27286308  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  27286307 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaa 27286208  T
Q  201 cgacttcatcgaaaaattcaattcc 225  Q
    |||||||| ||||||| ||||||||    
T  27286207 cgacttcaccgaaaaagtcaattcc 27286183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52385788 - 52386010
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  52385788 aaagaggaaagagaattggaaaagtaagaaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaat 52385887  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52385888 aaacttgtctatggtggaacatatgaaacacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 52385987  T
Q  201 cgacttcatcgaaaaattcaatt 223  Q
    |||||||| ||||||| ||||||    
T  52385988 cgacttcaccgaaaaagtcaatt 52386010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 39241773 - 39241589
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 125  Q
    ||||||||||||||| ||| ||||||||||||||||| |||   ||   ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39241773 aagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaacttgtctatggtggaacatatg 39241677  T
Q  126 aagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaatt-aaacgacttcatcgaa 213  Q
    ||||||||||| ||||||| |||||||| |||||| ||| |||| ||  ||| ||||||||||| |   ||| ||||||||||||||||    
T  39241676 aagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattgaccccattcaaacgacttcatcgaa 39241589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12981623 - 12981521
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  12981623 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 12981524  T
Q  101 aaa 103  Q
    |||    
T  12981523 aaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45348242 - 45348344
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  45348242 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 45348341  T
Q  101 aaa 103  Q
    |||    
T  45348342 aaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 45325635 - 45325701
Alignment:
Q  27 agaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    |||||||||||||| ||| ||| |||||||||||||||||||| ||  |||||||||||||||||||    
T  45325635 agaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatc 45325701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 19436915 - 19436690
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19436915 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaat 19436816  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  19436815 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatctgattggctgaattaaa 19436716  T
Q  201 cgacttcatcgaaaaattcaattccc 226  Q
    |||||||| ||||||| || ||||||    
T  19436715 cgacttcaccgaaaaagtctattccc 19436690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29833919 - 29834144
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29833919 aaagaggaaagagaattggaaaaataagtaaaatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaat 29834018  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  29834019 aaacttgtctatggtggaacatatgaagcaagtgatccatattagagtttgtcccaacatctgacatgtcatggcttgaaatctgattggctgaattaaa 29834118  T
Q  201 cgacttcatcgaaaaattcaattccc 226  Q
    |||||| | | ||||| |||||||||    
T  29834119 cgactttaccaaaaaagtcaattccc 29834144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 45972525 - 45972423
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  45972525 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 45972426  T
Q  101 aaa 103  Q
    |||    
T  45972425 aaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 29258556 - 29258440
Alignment:
Q  75 aaatctaaccgttaa-gatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatg 173  Q
    ||||||||||||||| |||  ||||||||||||||| | ||||||||| ||| |||||||||||||| ||| ||||||| |||  || ||| |||||||     
T  29258556 aaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgt-ccattatctgacgtgtcatc 29258458  T
Q  174 gcttgaaatctgattggc 191  Q
     |||||||||||||||||    
T  29258457 acttgaaatctgattggc 29258440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 6442703 - 6442636
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||  ||||||||| |||||||||    
T  6442703 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatc 6442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 34094184 - 34094118
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagat 92  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||| |||  ||||||||||||||||||    
T  34094184 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 29243455 - 29243380
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| ||| ||||||||||||||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  29243455 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 47328040 - 47327942
Alignment:
Q  5 aggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||| |||||||||| |  | ||||||| ||||||| ||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| |||||||||    
T  47328040 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 47327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14096499 - 14096274
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  14096499 aaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaagatcttgaaat 14096400  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  14096399 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatctgattggctgaattaaa 14096300  T
Q  201 cgacttcatcgaaaaattcaattccc 226  Q
    |||||||| ||||||| |||||||||    
T  14096299 cgacttcaccgaaaaagtcaattccc 14096274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18977085 - 18977200
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||| | ||||| ||| |||||||||||||||||||||||| ||  ||||||||| ||||||||| ||||||    
T  18977085 aaagaggagagataattggtactagaagaaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaaat 18977184  T
Q  101 aaacttgtctatggtg 116  Q
    ||||||||| ||||||    
T  18977185 aaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14810089 - 14810191
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||| |||| ||| ||||||    
T  14810089 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaat 14810188  T
Q  101 aaa 103  Q
    |||    
T  14810189 aaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15330837 - 15330735
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  15330837 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 15330738  T
Q  101 aaa 103  Q
    |||    
T  15330737 aaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 37261671 - 37261773
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  37261671 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 37261770  T
Q  101 aaa 103  Q
    |||    
T  37261771 aaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16429966 - 16429864
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||| ||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  16429966 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaat 16429867  T
Q  101 aaa 103  Q
    |||    
T  16429866 aaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17690706 - 17690604
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||||    
T  17690706 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 17690607  T
Q  101 aaa 103  Q
    |||    
T  17690606 aaa 17690604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 18977216 - 18977272
Alignment:
Q  157 acatatgatgtgtcatggcttgaaatctgattggctgaattaaacgacttcatcgaa 213  Q
    |||| ||| |||||||  ||| |||||||||||||||||||||||||||||||||||    
T  18977216 acatgtgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaa 18977272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 37079045 - 37078947
Alignment:
Q  5 aggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||| |||||||||| |  | ||||||| ||||||| ||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| |||||||||    
T  37079045 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 37078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 7089278 - 7089225
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||||||| |||  |||||||||| |||||||| |||||||||    
T  7089278 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 7089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 33755093 - 33755146
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| |||||||  |||||||||| |||| ||| |||||||||    
T  33755093 taccacaataacatatagaccaagtaaatctaaccattaatatcatgaaataaa 33755146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 12938885 - 12938678
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12938885 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaat 12938786  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||| |||||||||||| |||||||||    
T  12938785 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatctgattggttgaattaaa 12938686  T
Q  201 cgacttca 208  Q
    ||||||||    
T  12938685 cgacttca 12938678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 28138039 - 28138217
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 125  Q
    ||||||||||||||| ||| |  |||||||||||| |||||||||||  |||||||||| |||||||| ||||||||||||||| ||| ||| |||||||    
T  28138039 aagaaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatgatgggacatatg 28138138  T
Q  126 aagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgact 205  Q
     |||||||| ||||||||| ||||||| || |||| ||| |||||||| |||||||| ||||||||||||||||||||||    
T  28138139 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 28138217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33695023 - 33694802
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    ||||| || |||||| |||||  |||||||||||||| || ||||||||||||||||||| |||||| ||||| ||||||||| ||||||||| ||||||    
T  33695023 aaagaagagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatgaaat 33694924  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    ||| ||||||||| ||||||||||| |||||||||||||||||| ||||| | |||  || | | |||||||  ||| ||||||||||||   | | |||    
T  33694923 aaatttgtctatgatggaacatatggagcaagtgatccatattaaaattt-ttccattatctaacgtgtcatcacttaaaatctgattggtccattcaaa 33694825  T
Q  201 cgacttcatcgaaaaattcaatt 223  Q
    |||||||| ||||||| ||||||    
T  33694824 cgacttcaccgaaaaagtcaatt 33694802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 14532051 - 14532115
Alignment:
Q  69 ccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagt 133  Q
    |||||||||||||||| |||||||| |||| ||||| |||| |||||| |||||||  |||||||    
T  14532051 ccaaacaaatctaaccattaagatcgtgaagtaaacctgtccatggtgaaacatatagagcaagt 14532115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 30625107 - 30624900
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  30625107 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaaattttgaaat 30625008  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||||||||||| |||||||||    
T  30625007 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatctgattggttgaattaaa 30624908  T
Q  201 cgacttca 208  Q
    ||||||||    
T  30624907 cgacttca 30624900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 41413417 - 41413606
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  41413417 aaagaggaaagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 41413516  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattgg 190  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  41413517 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattgg 41413606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 1828655 - 1828466
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  1828655 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 1828556  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattgg 190  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  1828555 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatctgattgg 1828466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 40314120 - 40313931
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  40314120 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 40314021  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattgg 190  Q
    ||||||||| | ||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||||||||||||    
T  40314020 aaacttgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatctgattgg 40313931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 31482071 - 31482248
Alignment:
Q  29 aaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaag 128  Q
    |||||| ||||| ||| ||||||||| |||| |||||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| ||    
T  31482071 aaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 31482170  T
Q  129 caagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgactt 206  Q
    ||||||||||||||||||||||||||  || | ||| |||||||  ||| |||| ||||||||| | | |||||||||    
T  31482171 caagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaatttgattggctcattcaaacgactt 31482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24788298 - 24788400
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||||    
T  24788298 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 24788397  T
Q  101 aaa 103  Q
    |||    
T  24788398 aaa 24788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 39884749 - 39884696
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  39884749 taccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 39884696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 13802682 - 13802869
Alignment:
Q  29 aaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaag 128  Q
    |||||| ||||| ||| ||||||||| ||||  ||||||||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| ||    
T  13802682 aaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggag 13802781  T
Q  129 caagtgatccatattataatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgacttcatcgaaaaa 216  Q
    ||||||||||||||||||||||||||  || | ||| |||||||  ||| |||||||||||| | | | ||||||||| | |||||||    
T  13802782 caagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgactttaccgaaaaa 13802869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 23613699 - 23613574
Alignment:
Q  29 aaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatctt-gaaataaacttgtctatggtggaacatatgaa 127  Q
    |||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||  ||| ||| || || ||||||||||||||  |    
T  23613699 aaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaacatattga 23613600  T
Q  128 gcaagtgatccatattataatttgtc 153  Q
    ||||||| ||||||||| ||||||||    
T  23613599 gcaagtggtccatattagaatttgtc 23613574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 23614338 - 23614272
Alignment:
Q  29 aaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatctt 95  Q
    |||||||||||| ||||||||| ||||||||  || |||||||||||||||||||||||||||||||    
T  23614338 aaaaatcatgtgtagagggtgtgccacaatattatggagaccaaacaaatctaaccgttaagatctt 23614272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 531786 - 531684
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||  ||||||    
T  531786 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaat 531687  T
Q  101 aaa 103  Q
    |||    
T  531686 aaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 30945452 - 30945527
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| ||| ||||||||||||||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  30945452 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 3879490 - 3879543
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||||||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  3879490 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30681 - 30783
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||||    
T  30681 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 30780  T
Q  101 aaa 103  Q
    |||    
T  30781 aaa 30783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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