View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2145_low_4 (Length: 368)
Name: NF2145_low_4
Description: NF2145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2145_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 133 - 357
Target Start/End: Complemental strand, 52995498 - 52995274
Alignment:
| Q |
133 |
taactaaattattttcattttggtctaattaattaggtgatcaaaattgtagtgatcaagatgtcttcttctgaaggagggaaaaagttgcaaaaaagct |
232 |
Q |
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| T |
52995498 |
taactaaattattttcattttggtctaattaattaggtgatcaaaattgtagtgatcaagatgtcttcttctgaaggagggaaaaagttgcaaaaaagct |
52995399 |
T |
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| Q |
233 |
actttgatgtggtgggattatgttgttcctcagaggtacctctgattgaaaacattctcaaacctcttcaaggtgtcaaagaggtttctgttatagttcc |
332 |
Q |
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| T |
52995398 |
actttgatgtggtgggattatgttgttcctcagaggtacctctgattgaaaacattctcaaacctcttcaaggtgtcaaagaggtttctgttatagttcc |
52995299 |
T |
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| Q |
333 |
atcaagaacagtcatcgttgttcat |
357 |
Q |
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| T |
52995298 |
atcaagaacagtcatcgttgttcat |
52995274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 52995632 - 52995568
Alignment:
| Q |
1 |
tttcttctcatctctctattttctaagtaacaaggttatatgattttccaacactcttaaactca |
65 |
Q |
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| T |
52995632 |
tttcttctcatctctctattttctaagtaacaaggtgatatgattttccaacactcttaaactca |
52995568 |
T |
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