View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2145_low_8 (Length: 253)

Name: NF2145_low_8
Description: NF2145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2145_low_8
NF2145_low_8
[»] scaffold0218 (1 HSPs)
scaffold0218 (18-243)||(16450-16675)
[»] chr3 (8 HSPs)
chr3 (15-243)||(17959104-17959332)
chr3 (15-243)||(14057621-14057849)
chr3 (17-144)||(16942022-16942149)
chr3 (79-243)||(21100697-21100858)
chr3 (71-240)||(5941731-5941898)
chr3 (69-113)||(14479500-14479544)
chr3 (69-107)||(17793425-17793463)
chr3 (69-107)||(19101865-19101903)
[»] chr7 (6 HSPs)
chr7 (15-243)||(48378847-48379074)
chr7 (15-243)||(13773776-13774004)
chr7 (15-243)||(15865050-15865265)
chr7 (69-243)||(22612589-22612762)
chr7 (69-243)||(11657556-11657729)
chr7 (69-243)||(13475131-13475304)
[»] scaffold0063 (1 HSPs)
scaffold0063 (15-243)||(26011-26239)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-243)||(132636-132864)
[»] chr1 (1 HSPs)
chr1 (15-243)||(51624804-51625031)
[»] scaffold0091 (1 HSPs)
scaffold0091 (15-243)||(31102-31330)
[»] scaffold0061 (2 HSPs)
scaffold0061 (74-243)||(16665-16834)
scaffold0061 (74-243)||(25723-25892)
[»] scaffold1269 (1 HSPs)
scaffold1269 (139-243)||(2089-2193)
[»] scaffold0054 (1 HSPs)
scaffold0054 (69-243)||(71200-71374)
[»] chr2 (3 HSPs)
chr2 (71-243)||(44583992-44584163)
chr2 (72-107)||(13362067-13362102)
chr2 (69-107)||(23651858-23651896)
[»] chr6 (5 HSPs)
chr6 (72-241)||(20145859-20146027)
chr6 (72-241)||(22186812-22186980)
chr6 (69-223)||(15118875-15119029)
chr6 (69-167)||(7680603-7680701)
chr6 (18-89)||(19545089-19545160)
[»] chr4 (6 HSPs)
chr4 (71-243)||(17338733-17338906)
chr4 (18-89)||(18554665-18554736)
chr4 (71-105)||(8808796-8808830)
chr4 (69-107)||(16282960-16282998)
chr4 (65-105)||(11332612-11332652)
chr4 (18-89)||(13268117-13268188)
[»] chr8 (3 HSPs)
chr8 (69-167)||(26859183-26859281)
chr8 (71-107)||(22553981-22554017)
chr8 (18-89)||(10454015-10454087)
[»] chr5 (3 HSPs)
chr5 (79-165)||(22484820-22484906)
chr5 (69-109)||(23950024-23950064)
chr5 (69-113)||(24829915-24829958)
[»] scaffold0601 (1 HSPs)
scaffold0601 (69-153)||(4129-4213)
[»] scaffold0094 (1 HSPs)
scaffold0094 (18-89)||(2445-2516)
[»] scaffold0145 (1 HSPs)
scaffold0145 (69-107)||(14717-14755)


Alignment Details
Target: scaffold0218 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 16675 - 16450
Alignment:
18 agaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatattttgat 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
16675 agaaaccctagttgcgacgggatcaagccaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttttct 16576  T
118 gtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatgagga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
16575 gtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgaggttaattaattcttaagttatgattgctgttatgagga 16476  T
218 agagttccactgaaaaattatgatga 243  Q
    ||||||||||||||||||||||||||    
16475 agagttccactgaaaaattatgatga 16450  T

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Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 17959104 - 17959332
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
17959104 agaagaaaccctagttgcgacgggatcaagtcaagctggaaattttagaagaaatcaaggtaagggggagaatctcttcatctctagggtttaatatttt 17959203  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
17959204 gattaagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgacgacgttgttgacgttaattaattcttaagttatgattgctgttatga 17959303  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    |||||||||||||||||||||||||||||    
17959304 ggaagagttccactgaaaaattatgatga 17959332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 14057621 - 14057849
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    |||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
14057621 agaagaaaccctagttgcgatgggatcaagcctagctggaaatttcagatgaaatcgaggtaaaggggagaatctcttcatctctagggtttattatttt 14057720  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    | |||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
14057721 gctgtagggttgtagaggggttggagtatgagtgttgttatcatggtgatgaggacgttgttgaggttaattaattcttaagttatgattgttgttatga 14057820  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    |||||||||||||||||||||||||||||    
14057821 ggaagagttccactgaaaaattatgatga 14057849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 16942022 - 16942149
Alignment:
17 aagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatattttga 116  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||     
16942022 aagaaaccctagttgcgactggatcaagccaagctggaaatttcataagaaatcgaggtaaggcggagaatctcttcatctctagggtttattattttgc 16942121  T
117 tgtagggttgtaaaggggttagagtatg 144  Q
    | ||||||||||||||||||||||||||    
16942122 tatagggttgtaaaggggttagagtatg 16942149  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 243
Target Start/End: Original strand, 21100697 - 21100858
Alignment:
79 ggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttga 178  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||  ||||||| |||||||| |||||||||||||| ||||||||||    |||| |      
21100697 ggggagaatctcttcatatctagggtttaatattttgttgtgggtctgtaaagaggttagaggatgagtgttgttataatggtgatgaaattgttgatag 21100796  T
179 cgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
     |||| |||||||||||| |||||   |||||||||  |||| ||||||||||||||||||||||    
21100797 ggttatttaattcttaagatatga---ttgttatgatcaagaattccactgaaaaattatgatga 21100858  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 5941731 - 5941898
Alignment:
71 gaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggac 170  Q
    |||||||||| |||||||| ||||||| ||||||| ||||||||| ||| ||| | ||||| | ||||||  |||||| |||||| ||||||||||        
5941731 gaggtaagggagagaatctattcatctatagggtt-aatattttgttgtggggctataaagagattagagagtgagtgatgttataatggtgatgaaatt 5941829  T
171 gttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatga 240  Q
     ||| ||  |||  |||||||||||| ||||||||||||||||| ||| | ||||||| |||||||||||    
5941830 attgatg-tgttgtttaattcttaagatatgattgttgttatgatgaaaaattccactaaaaaattatga 5941898  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 14479500 - 14479544
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattt 113  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||    
14479500 tcgaggtaagggggagaatcttttcatctctagggtttattattt 14479544  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 17793463 - 17793425
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggttta 107  Q
    ||||||||||||||||||||| |||||||||||||||||    
17793463 tcgaggtaagggggagaatctattcatctctagggttta 17793425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 19101903 - 19101865
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggttta 107  Q
    ||||||||||||||||||||| |||||||||||||||||    
19101903 tcgaggtaagggggagaatctattcatctctagggttta 19101865  T

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Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 48379074 - 48378847
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
48379074 agaagaaaccctagttgcgacgggatcaagccaagctggaaatttcagaagaaatcgaggtaagggg-agaatctcttcatctctagggtttaatatttt 48378976  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||    
48378975 gttgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgaggttaattaattcttaagttatgattgctgtcatga 48378876  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    |||||||||||||||||||||||||||||    
48378875 ggaagagttccactgaaaaattatgatga 48378847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 13773776 - 13774004
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
13773776 agaagaaaccctagttgcgaccggatcaagccaagctgaaaatttcagaagaaatcgaggtaagggatagaatctcttcatctctagggtttattatttt 13773875  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
13773876 gttgtagggttgtaaaggggttatagtatgagtgttgttatgatggtgatgaggacgttgttgaggttaattaattcttaagttatgattgttgttatga 13773975  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    |||||||||||||||||||||||||||||    
13773976 ggaagagttccactgaaaaattatgatga 13774004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 15865050 - 15865265
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    |||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||             ||    
15865050 agaagaaaccctagttgcaacgggatcaaaccaagctagaaatttcagaagaaatcgaggtaagggggagaatctcttcatctct-------------tt 15865136  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
15865137 gttgtagggttgtaaagaggttagagtatgagtgttgttatgatggtgatgaggacgttgttgaggttaattaattcttaagttatgattgttgttatga 15865236  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    |||||||||||||| ||||||||||||||    
15865237 ggaagagttccacttaaaaattatgatga 15865265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 22612589 - 22612762
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgagg 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||| ||| ||||||||||||| |||| ||||||||||||||||||||||||     
22612589 tcgaggtaagggggagaatctcttcatctctagggtttaatattggcttgtggggatgtaaaggggttatagtaggagtgttgttatgatggtgatgaga 22612688  T
169 acgttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
     ||||||||| |||| |||||| | |||||||||||||||||||||||| ||||| |||| ||||||||||||||    
22612689 gcgttgttgaagttaattaattttaaagttatgattgttgttatgaggaggagtttcact-aaaaattatgatga 22612762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 11657729 - 11657556
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgagg 168  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| |||  || ||||||||||||| ||||  |||||||||||| |||||||||||    
11657729 tcgaggtaagggtgagaatctcttcatttctagggtttaatattttgttgtgaggctgtaaaggggttacagtagaagtgttgttatgctggtgatgagg 11657630  T
169 acgttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
    |||||||||  |||| |||||| |  ||||||||||||||||||||||||||||| |||| ||||||||||||||    
11657629 acgttgttggggttaattaattttacagttatgattgttgttatgaggaagagtttcact-aaaaattatgatga 11657556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 13475131 - 13475304
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgagg 168  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| |  ||| ||| ||||||||||||| |||| |||||||||||||||||||||||||    
13475131 tcgaggtaaagggaagaatctcttcatctctagggtttaatattctattgtggggctgtaaaggggttatagtaagagtgttgttatgatggtgatgagg 13475230  T
169 acgttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
    ||| |||||  |||| |||||| | ||||||||||||||||| |||||||||||| || | ||||||||||||||    
13475231 acgctgttggggttaattaattttaaagttatgattgttgttgtgaggaagagtttcaat-aaaaattatgatga 13475304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 26011 - 26239
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
26011 agaagaaaccctagttgcgacgggatcaagccaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttattatttt 26110  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    | | |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||| ||||||||||||||    
26111 gctatagggttgtaaaggggttggagtatgagtgttgttatgatggtgatgaggacattgttgaagttaattgattcttaagttaagattgttgttatga 26210  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    |||||||||||||||||||||||||||||    
26211 ggaagagttccactgaaaaattatgatga 26239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 132864 - 132636
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
132864 agaagaaaccctagttgtgacgggatcaagccaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatttctagggtttattatttt 132765  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    | |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
132764 gttgtagggttgtaaaggggttggaatatgagttttgttatgatggtgatgaggacgttgttgaggttaattaattcttaagttatgattgttgttatga 132665  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    |||||||||||||||||||||||||||||    
132664 ggaagagttccactgaaaaattatgatga 132636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 51624804 - 51625031
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
51624804 agaagaaaccctagttgcgacgagatcaagccaagctggaaatttcagaagaaatcgaggtaaggggg-gaatctcttcatctctaaggtttaatatttt 51624902  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
51624903 gctgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgaggttaattaattcttaagttatgattgttgttatga 51625002  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    |||||| ||||| ||||||||||||||||    
51625003 ggaagatttccattgaaaaattatgatga 51625031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 31330 - 31102
Alignment:
15 agaagaaaccctagttgcgacgggatcaagtcaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttaatatttt 114  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
31330 agaagaaaccctagttacgacgggatcaagccaagctggaaatttcagaagaaatcgaggtaagggggagaatctcttcatctctagggtttattatttt 31231  T
115 gatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatga 214  Q
    | | | |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||    
31230 gtttttgggttgtaaaggggttggagtatgagtgttgttatgatggtgatgaggactttgttgatgttaatttattcttaagttatgattgttgttatga 31131  T
215 ggaagagttccactgaaaaattatgatga 243  Q
    ||||||||||||||||||| |||||||||    
31130 ggaagagttccactgaaaatttatgatga 31102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 16665 - 16834
Alignment:
74 gtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgtt 173  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
16665 gtaagggggagaatctcttcatctctagggtttattattttgctgtagggttgtaaaggggttggagtatgagtgttgttatgatggtgatgaggacatt 16764  T
174 gttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
    ||||| |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
16765 gttgaggttaattaattcttaagttaagattgttgttatgtggaagagttccactgaaaaattatgatga 16834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 25723 - 25892
Alignment:
74 gtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggacgtt 173  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
25723 gtaagggggagaatctcttcatctctagggtttattattttgctgtagggttgtaaaggggttggagtatgagtgttgttatgatggtgatgaggacatt 25822  T
174 gttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
    ||||| |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
25823 gttgaggttaattaattcttaagttaagattgttgttatgtggaagagttccactgaaaaattatgatga 25892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 2193 - 2089
Alignment:
139 agtatgagtgttgttatgatggtgatgaggacgttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattat 238  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
2193 agtatgagtgttgttatgatggtgatgaggacgttgttgaggttaattaattcttaagttatgattgttgttatgaggaagagttccagtgaaaaattat 2094  T
239 gatga 243  Q
    |||||    
2093 gatga 2089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 71374 - 71200
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaagg-ggttagagtatgagtgttgttatgatggtgatgag 167  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| || ||| ||| | |||||| |||||  ||||| |||| ||||||||||||||||     
71374 tcgaggtaagggggagaatctcttcatctcttgggtttactattctgttgtggggctttaaaggaggttaatgtatgcgtgtggttatgatggtgatgaa 71275  T
168 gacgttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
    ||||||| ||   ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
71274 gacgttggtgggtttaattaattcttaagttatgattattgttatgaggaagagttccact-aaaaattatgatga 71200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 44583992 - 44584163
Alignment:
71 gaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggac 170  Q
    ||||||||||||||||||||| | |||||||||||||||||| || ||| ||| |||||| | |||| ||||  |||||||||||||||||||||||||     
44583992 gaggtaagggggagaatctctccgtctctagggtttaatattctgttgtggggatgtaaatgagttatagtagcagtgttgttatgatggtgatgaggat 44584091  T
171 gttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
    |||||||  |||| |||||| | ||||||||||||||||||||||||| || | |||| ||||||||||||||    
44584092 gttgttggggttaattaattttaaagttatgattgttgttatgaggaaaagcttcact-aaaaattatgatga 44584163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 13362102 - 13362067
Alignment:
72 aggtaagggggagaatctcttcatctctagggttta 107  Q
    ||||||||||||||||||||||||||||||||||||    
13362102 aggtaagggggagaatctcttcatctctagggttta 13362067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 23651858 - 23651896
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggttta 107  Q
    ||||||||||||||||||||| |||||||||||||||||    
23651858 tcgaggtaagggggagaatctattcatctctagggttta 23651896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 20145859 - 20146027
Alignment:
72 aggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaagggg-ttagagtatgagtgttgttatgatggtgatgaggac 170  Q
    |||||||||| ||||||||||||||||| ||||||| |||| || ||| ||| | |||||||| |||  |||||||||| ||||||||||||||||||||    
20145859 aggtaaggggaagaatctcttcatctcttgggtttactattctgttgtggggctttaaagggggttaatgtatgagtgtggttatgatggtgatgaggac 20145958  T
171 gttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgat 241  Q
    |||||||   ||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
20145959 gttgttgggttta-ttaattattaagttatgattattgttatgaggaagagttccact-aaaaattatgat 20146027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 22186980 - 22186812
Alignment:
72 aggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaagggg-ttagagtatgagtgttgttatgatggtgatgaggac 170  Q
    |||||||||| ||||||||||||||||| ||||||| |||| || ||| ||| | |||||||| |||  |||||||||| ||||||||||||||||||||    
22186980 aggtaaggggaagaatctcttcatctcttgggtttactattctgttgtggggctttaaagggggttaatgtatgagtgtggttatgatggtgatgaggac 22186881  T
171 gttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgat 241  Q
    |||||||   ||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
22186880 gttgttgggttta-ttaattattaagttatgattattgttatgaggaagagttccact-aaaaattatgat 22186812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 15119029 - 15118875
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgagg 168  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||   ||| ||  ||||||||||||| | ||  |||||||||||||| || ||||||    
15119029 tcgaggtaaggggaagaatctcttcatctctaggatttaatatttgtttgtgggaatgtaaaggggttataatagtagtgttgttatgatagtaatgagg 15118930  T
169 acgttgttgacgttacttaattcttaagttatgattgttgttatgaggaagagtt 223  Q
     ||||||||| |||| |||||| | ||||||||||||||||||| ||||||||||    
15118929 gcgttgttgaagttaattaattttaaagttatgattgttgttataaggaagagtt 15118875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 7680603 - 7680701
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgag 167  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||   ||| ||| ||||| |  ||  |||||||||||||||| ||| |||||||||    
7680603 tcgaggtaagggggagaatctcttcatgtctagggtttattatttcattgtggggctgtaatgatgtcggagtatgagtgttgttgtgacggtgatgag 7680701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 19545089 - 19545160
Alignment:
18 agaaaccctagttgcgacgggatcaagtcaag-ctggaaatttcagaagaaatcgaggtaagggggagaatct 89  Q
    ||||||||||| |||||||| |||||| |||  |||||| |||| |||| |||||||||||||||||||||||    
19545089 agaaaccctagctgcgacggaatcaagccaaaactggaattttc-gaaggaatcgaggtaagggggagaatct 19545160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 17338906 - 17338733
Alignment:
71 gaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgaggac 170  Q
    |||||||  ||||||||||||| |||||||||||||||||||||| ||| ||| ||||||| | |||||| ||||||| |||||| ||||||||||        
17338906 gaggtaaatgggagaatctctttatctctagggtttaatattttgttgtggggatgtaaagagattagagaatgagtggtgttataatggtgatgaaatt 17338807  T
171 gttgttgacgttacttaa-ttcttaagttatgattgttgttatgaggaagagttccactgaaaaattatgatga 243  Q
    |||| |   | |  |||| || ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
17338806 gttggttgggatgtttaattttttaagatatgattgttgttatgatgaagaattccactgaaaaattatgatga 17338733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 18554665 - 18554736
Alignment:
18 agaaaccctagttgcgacgggatcaagtcaa-gctggaaatttcagaagaaatcgaggtaagggggagaatct 89  Q
    ||||||||||| |||||||| |||||| ||| ||||||| |||| ||||  ||||||||||||||||||||||    
18554665 agaaaccctagctgcgacggaatcaagccaaagctggaattttc-gaagggatcgaggtaagggggagaatct 18554736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 8808830 - 8808796
Alignment:
71 gaggtaagggggagaatctcttcatctctagggtt 105  Q
    ||||||||||||||||||| |||||||||||||||    
8808830 gaggtaagggggagaatctattcatctctagggtt 8808796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 16282960 - 16282998
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggttta 107  Q
    ||||||||||||||||||||| ||||||| |||||||||    
16282960 tcgaggtaagggggagaatctattcatctatagggttta 16282998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 11332652 - 11332612
Alignment:
65 gaaatcgaggtaagggggagaatctcttcatctctagggtt 105  Q
    ||||| |||||||| |||||||||||||||||| |||||||    
11332652 gaaattgaggtaagagggagaatctcttcatctatagggtt 11332612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 13268188 - 13268117
Alignment:
18 agaaaccctagttgcgacgggatcaagtcaa-gctggaaatttcagaagaaatcgaggtaagggggagaatct 89  Q
    ||||||||||| || ||||| |||||| ||| ||||||| ||||| | | |||||||||||||||||||||||    
13268188 agaaaccctagctgggacggaatcaagccaaagctggaattttca-agggaatcgaggtaagggggagaatct 13268117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 26859183 - 26859281
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatgag 167  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||  | | | |||||||||| ||   ||||||||||||||| ||| || ||||||    
26859183 tcgaggtaagggggagaatctcttcatctctagggcttattattttattttcgagttgtaaaggtgtcgaagtatgagtgttgttgtgacggcgatgag 26859281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 22554017 - 22553981
Alignment:
71 gaggtaagggggagaatctcttcatctctagggttta 107  Q
    ||||||||||||||||||| |||||||||||||||||    
22554017 gaggtaagggggagaatctattcatctctagggttta 22553981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 10454015 - 10454087
Alignment:
18 agaaaccctagttgcgacgggatcaagtc-aagctggaaatttcagaagaaatcgaggtaagggggagaatct 89  Q
    |||||||||||||||||||  |||||| | |||||| |||||||  ||  ||||||||||||||| |||||||    
10454015 agaaaccctagttgcgacgaaatcaagccaaagctgaaaatttccaaaagaatcgaggtaaggggaagaatct 10454087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 22484820 - 22484906
Alignment:
79 ggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgttatgatggtgatg 165  Q
    ||||||||||||||||||| |||||||||  |||||  |||  ||||||||||| ||| |||||||| ||||||| | |||||||||    
22484820 ggggagaatctcttcatctttagggtttatcattttattgtgaggttgtaaaggtgttggagtatgaatgttgttgtaatggtgatg 22484906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 23950024 - 23950064
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaat 109  Q
    ||||||||||||||||||||| |||||||||||||||||||    
23950024 tcgaggtaagggggagaatcttttcatctctagggtttaat 23950064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 24829915 - 24829958
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattt 113  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||    
24829915 tcgaggtaagggg-agaatcgcttcatctctagggtttattattt 24829958  T

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Target: scaffold0601 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 4129 - 4213
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggtttaatattttgatgtagggttgtaaaggggttagagtatgagtgttgtt 153  Q
    |||||||||||| |||||||||||||||  ||||||||| ||||||  ||| ||| |||||||  || || || |||||||||||    
4129 tcgaggtaagggagagaatctcttcatccttagggtttattattttattgtggggctgtaaagaagtcagggtttgagtgttgtt 4213  T

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Target: scaffold0094 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 2445 - 2516
Alignment:
18 agaaaccctagttgcgacgggatcaagtcaa-gctggaaatttcagaagaaatcgaggtaagggggagaatct 89  Q
    ||||||||||| || ||||| |||||| ||| ||||||| ||||| ||| |||||||||||||||||||||||    
2445 agaaaccctagctgtgacggaatcaagccaaagctggaattttca-aaggaatcgaggtaagggggagaatct 2516  T

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Target: scaffold0145 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 14755 - 14717
Alignment:
69 tcgaggtaagggggagaatctcttcatctctagggttta 107  Q
    ||||||||||||||||||||| ||||||| |||||||||    
14755 tcgaggtaagggggagaatctattcatctatagggttta 14717  T

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