View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21460_high_3 (Length: 349)
Name: NF21460_high_3
Description: NF21460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21460_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 48070106 - 48070443
Alignment:
| Q |
12 |
cagagacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtcagcaataataaggcattgaagt |
111 |
Q |
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| T |
48070106 |
cagagacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtgagcaataataaggcattgaagt |
48070205 |
T |
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| Q |
112 |
tatcaggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattcaccaa |
211 |
Q |
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| T |
48070206 |
tatcaggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattcaccaa |
48070305 |
T |
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| Q |
212 |
gagtccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgggttat |
311 |
Q |
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| T |
48070306 |
gagtccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgggttat |
48070405 |
T |
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| Q |
312 |
agtagtccttataataaacccaaaggtgattttgattt |
349 |
Q |
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| T |
48070406 |
agtagtccttataataaacccaaaggtgattttgattt |
48070443 |
T |
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