View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21460_high_6 (Length: 336)
Name: NF21460_high_6
Description: NF21460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21460_high_6 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 26157530 - 26157195
Alignment:
| Q |
1 |
acattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcattaccaaatcgtgatttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26157530 |
acattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcattaccaaatcgtgatttct |
26157431 |
T |
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| Q |
101 |
tatgctcttttatagtcaaggttttgacaggcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157430 |
tatgctcttttatagtcaaggttttgacaggctttaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacat |
26157331 |
T |
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| Q |
201 |
attgtacccctgccgacagacttgaagacctgcttcaaaccaatcaagttctgtcgtctggaaaaactttgttgcttgaagtgatctgaataagtgtttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26157330 |
attgtacccctgccgacagacttgaagacctgcttcaaaacaataaagttctgtcgtctggaaaaactttgttgcttcaagtgatctgaataagtgtttc |
26157231 |
T |
|
| Q |
301 |
nnnnnnngagccttaggaggtctgtggtgctgctca |
336 |
Q |
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||||||||||||||||||| ||| ||||| |
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| T |
26157230 |
tttttttgagccttaggaggtctgtgatgcagctca |
26157195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 26170828 - 26170493
Alignment:
| Q |
1 |
acattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcattaccaaatcgtgatttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26170828 |
acattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcattaccaaatcgtgatttct |
26170729 |
T |
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| Q |
101 |
tatgctcttttatagtcaaggttttgacaggcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170728 |
tatgctcttttatagtcaaggttttgacaggctttaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacat |
26170629 |
T |
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| Q |
201 |
attgtacccctgccgacagacttgaagacctgcttcaaaccaatcaagttctgtcgtctggaaaaactttgttgcttgaagtgatctgaataagtgtttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26170628 |
attgtacccctgccgacagacttgaagacctgcttcaaaacaataaagttctgtcgtctggaaaaactttgttgcttcaagtgatctgaataagtgtttc |
26170529 |
T |
|
| Q |
301 |
nnnnnnngagccttaggaggtctgtggtgctgctca |
336 |
Q |
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||||||||||||||||||| ||| ||||| |
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| T |
26170528 |
tttttttgagccttaggaggtctgtgatgcagctca |
26170493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 336
Target Start/End: Original strand, 44783946 - 44784278
Alignment:
| Q |
4 |
ttacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcattaccaaatcgtgatttcttat |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44783946 |
ttacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcattaccaaatcgtgatttcttac |
44784045 |
T |
|
| Q |
104 |
gctcttttatagtcaaggttttgacaggcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacatatt |
203 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
44784046 |
gctcttttgtagtcaaggttttgacaggctttaaattgaaattataatcaaggtgaagatagttcaaatttttcctgtgaattaacagattcaacatatt |
44784145 |
T |
|
| Q |
204 |
gtacccctgccgacagacttgaagacctgcttcaaaccaatcaagttctgtcgtctggaaaaactttgttgcttgaagtgatctgaataagtgtttcnnn |
303 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44784146 |
gtacccctgtcgacagacttgaagacctgcttcaacccaatcaagttctgtggtctggaaaaactttgttgcttgaagtgatctgaataagtgtttcttt |
44784245 |
T |
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| Q |
304 |
nnnngagccttaggaggtctgtggtgctgctca |
336 |
Q |
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||||||| ||||||||||| ||| ||||| |
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| T |
44784246 |
ttttgagccttgggaggtctgtgatgcagctca |
44784278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 2896659 - 2896365
Alignment:
| Q |
1 |
acattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcattaccaaatcgtgatttct |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||| |
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| T |
2896659 |
acattacccaagcgatactgaacattggcatccaccacaagtttcgtcaaacgaaggatctcacgacagagatgaaaagcattaccaaatcgtgatttct |
2896560 |
T |
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| Q |
101 |
tatgctcttttatagtcaaggttttgacaggcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacat |
200 |
Q |
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|| |||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
2896559 |
tacgctcttttgtagtcaaggttttgacaggcttcaaattaaaattataatcaaggtgaaggtagttcaaatttttcctgtgtatcaacagattcaacat |
2896460 |
T |
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| Q |
201 |
attgtacccctgccgacagacttgaagacctgcttcaaaccaatcaagttctgtcgtctggaaaaactttgttgcttgaagtgatctgaataagt |
295 |
Q |
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|||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
2896459 |
gttgtacccctgcttacaaacttgaagacctgcttcaacccaatcaagttctgtggtctggaaaaactttgtcgcttgaagtgatctgaataagt |
2896365 |
T |
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