View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21461_low_1 (Length: 433)

Name: NF21461_low_1
Description: NF21461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21461_low_1
NF21461_low_1
[»] chr2 (17 HSPs)
chr2 (121-302)||(35734525-35734706)
chr2 (121-302)||(10355624-10355805)
chr2 (121-302)||(16254926-16255107)
chr2 (121-298)||(28808682-28808864)
chr2 (121-324)||(7759303-7759522)
chr2 (121-324)||(34210347-34210560)
chr2 (123-295)||(16256139-16256321)
chr2 (121-302)||(43589809-43590000)
chr2 (7-61)||(10355864-10355918)
chr2 (7-61)||(16255167-16255221)
chr2 (7-61)||(35734411-35734465)
chr2 (7-61)||(28808923-28808977)
chr2 (7-53)||(7759071-7759117)
chr2 (11-53)||(7759119-7759161)
chr2 (10-53)||(7759202-7759245)
chr2 (21-60)||(16256384-16256423)
chr2 (137-208)||(35851671-35851742)
[»] chr1 (29 HSPs)
chr1 (121-297)||(49622841-49623016)
chr1 (121-295)||(15544441-15544615)
chr1 (123-294)||(46833179-46833352)
chr1 (121-302)||(29743408-29743599)
chr1 (121-302)||(11376619-11376810)
chr1 (121-324)||(42886646-42886864)
chr1 (121-302)||(51621791-51621972)
chr1 (121-302)||(44565005-44565196)
chr1 (121-248)||(261672-261798)
chr1 (121-302)||(2326768-2326959)
chr1 (327-406)||(49623081-49623160)
chr1 (7-61)||(49622727-49622781)
chr1 (7-61)||(261558-261612)
chr1 (7-61)||(2326655-2326709)
chr1 (7-61)||(15544675-15544729)
chr1 (7-61)||(44565256-44565310)
chr1 (7-61)||(51621678-51621732)
chr1 (239-302)||(21374002-21374065)
chr1 (7-61)||(11376870-11376924)
chr1 (7-60)||(29743658-29743711)
chr1 (7-61)||(46833445-46833499)
chr1 (121-208)||(37661901-37661989)
chr1 (121-236)||(33505744-33505859)
chr1 (10-53)||(42886921-42886964)
chr1 (327-403)||(49602734-49602810)
chr1 (121-174)||(15429337-15429390)
chr1 (290-324)||(11376582-11376616)
chr1 (290-324)||(21374068-21374102)
chr1 (280-324)||(25700306-25700350)
[»] chr6 (8 HSPs)
chr6 (121-305)||(18227319-18227503)
chr6 (123-234)||(20219057-20219168)
chr6 (123-234)||(22113082-22113193)
chr6 (121-302)||(11455106-11455297)
chr6 (7-53)||(20219243-20219289)
chr6 (7-53)||(22113268-22113314)
chr6 (185-285)||(17508420-17508520)
chr6 (18-61)||(18227562-18227605)
[»] scaffold0470 (1 HSPs)
scaffold0470 (121-302)||(60-251)
[»] chr8 (14 HSPs)
chr8 (121-302)||(6610772-6610963)
chr8 (121-244)||(43633687-43633808)
chr8 (123-302)||(2955918-2956107)
chr8 (123-248)||(36557098-36557223)
chr8 (124-302)||(40977542-40977725)
chr8 (242-326)||(22976388-22976472)
chr8 (121-248)||(21595150-21595277)
chr8 (7-60)||(6610658-6610711)
chr8 (10-61)||(43633868-43633919)
chr8 (242-302)||(43047901-43047961)
chr8 (121-220)||(43047984-43048083)
chr8 (121-207)||(22976474-22976560)
chr8 (284-324)||(36557047-36557087)
chr8 (20-52)||(27424325-27424357)
[»] chr7 (10 HSPs)
chr7 (121-293)||(29008622-29008804)
chr7 (121-302)||(12313887-12314068)
chr7 (121-302)||(1827889-1828080)
chr7 (123-302)||(47645423-47645612)
chr7 (121-298)||(33118636-33118828)
chr7 (122-324)||(44119040-44119256)
chr7 (7-57)||(29008509-29008559)
chr7 (240-295)||(40461283-40461338)
chr7 (7-53)||(42027803-42027849)
chr7 (17-53)||(40040517-40040553)
[»] chr4 (26 HSPs)
chr4 (121-295)||(38024524-38024708)
chr4 (121-324)||(6885015-6885234)
chr4 (121-293)||(29118913-29119085)
chr4 (121-248)||(37563788-37563915)
chr4 (121-302)||(49284074-49284259)
chr4 (121-286)||(55873512-55873687)
chr4 (121-248)||(29191025-29191151)
chr4 (230-321)||(54975749-54975840)
chr4 (121-197)||(54975830-54975906)
chr4 (123-302)||(42739582-42739771)
chr4 (121-302)||(1921145-1921336)
chr4 (121-302)||(22443731-22443922)
chr4 (123-246)||(47497566-47497690)
chr4 (7-61)||(29191204-29191258)
chr4 (7-61)||(54975965-54976019)
chr4 (121-236)||(41279202-41279317)
chr4 (10-61)||(38024414-38024465)
chr4 (135-203)||(8067199-8067268)
chr4 (123-290)||(39593207-39593379)
chr4 (7-53)||(6884912-6884958)
chr4 (7-61)||(37563973-37564027)
chr4 (239-302)||(30548051-30548114)
chr4 (7-53)||(55873758-55873804)
chr4 (290-324)||(22443925-22443959)
chr4 (290-324)||(38024718-38024752)
chr4 (290-324)||(42739774-42739808)
[»] chr5 (11 HSPs)
chr5 (127-294)||(30411399-30411577)
chr5 (121-287)||(35384171-35384347)
chr5 (121-302)||(1751295-1751486)
chr5 (129-302)||(11726579-11726762)
chr5 (121-302)||(10329701-10329894)
chr5 (121-302)||(37275944-37276135)
chr5 (7-61)||(35384406-35384460)
chr5 (7-61)||(30411279-30411333)
chr5 (121-208)||(37275249-37275336)
chr5 (239-302)||(37275334-37275397)
chr5 (284-322)||(25595631-25595669)
[»] scaffold0155 (1 HSPs)
scaffold0155 (123-300)||(27987-28174)
[»] chr3 (3 HSPs)
chr3 (121-302)||(46485484-46485675)
chr3 (137-238)||(7311392-7311490)
chr3 (290-324)||(46485678-46485712)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 35734525 - 35734706
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  35734525 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 35734624  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  35734625 catatttaattaaaatcccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctcccctcc 35734706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 10355805 - 10355624
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  10355805 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 10355706  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||    
T  10355705 catatttaattaaaatctcttccctcccatcatttgaaccaaacatatatttaattgatatatttccccttcccttccctcc 10355624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 16255107 - 16254926
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  16255107 tgaagtgaataatataaagatcttgatattgtttcaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 16255008  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| ||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  16255007 catatttaattaaaatcccttccctcccattatttgaaccaaacatatatttaattgatatatcttcccttccctcccctcc 16254926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 121 - 298
Target Start/End: Complemental strand, 28808864 - 28808682
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||     ||| || |    
T  28808864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctcccctccccttatgaacc 28808765  T
Q  216 aaacacatatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctccc 298  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28808764 aaacacatatttaattaaaatatcttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctccc 28808682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 121 - 324
Target Start/End: Original strand, 7759303 - 7759522
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaag-taatttggttttaaaatccctctccttcccttataaatcaaac 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||| ||| ||| ||||||| || |||||    
T  7759303 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaaataatttggttttaaaatctctcccctccccttatgaaccaaac 7759402  T
Q  220 acatatttgattaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctcccc-----ttccctcccctccat 304  Q
    |||||||| |||||||||||          ||||||||||||||||||| |||| |||||||||||||||||||||||||     |||||||||||||||    
T  7759403 acatatttaattaaaatctcttccctcccattccctcccatcatttgaaccaaacatatatttaattgatatatctccccttcctttccctcccctccat 7759502  T
Q  305 taaaaccactcccctcccct 324  Q
    ||||||| ||||||||||||    
T  7759503 taaaacccctcccctcccct 7759522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 121 - 324
Target Start/End: Original strand, 34210347 - 34210560
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  34210347 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 34210446  T
Q  221 catatttgattaaaatctcttccctccc----------atcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaac 310  Q
     |||||||||||||||| || |||||||          |||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  34210447 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttccctcccctccattaaaac 34210546  T
Q  311 cactcccctcccct 324  Q
      ||||||||||||    
T  34210547 tcctcccctcccct 34210560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 123 - 295
Target Start/End: Complemental strand, 16256321 - 16256139
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | ||||||||| |    
T  16256321 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaatcaaacata 16256222  T
Q  223 tatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 295  Q
    ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||    
T  16256221 tatttgattaaaatccctcccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttccct 16256139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 43589809 - 43590000
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  ||||| ||||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || ||||||    
T  43589809 tgaagtgaataatttaaaaattgtgatactgttttaatattagagggataaaaaagtaatttagttttaaaatctctgccctccccttgtgaaccaaaca 43589908  T
Q  221 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
      ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||    
T  43589909 tgtatttgattaaaattcctcccctccccttccctcccatcatttgaaccaaacatatatttaattaaaatatctccccttcccttccctcc 43590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 10355918 - 10355864
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10355918 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 10355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 16255221 - 16255167
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16255221 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 16255167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 35734411 - 35734465
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35734411 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 35734465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 28808977 - 28808923
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  28808977 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaac 28808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 7759071 - 7759117
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7759071 tagattattttagaagtgctctaatatttatgaatacctaatatttt 7759117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 7759119 - 7759161
Alignment:
Q  11 ttattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  7759119 ttattttagaagtgctctaatatttatgaatacctaatatttt 7759161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 7759202 - 7759245
Alignment:
Q  10 attattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  7759202 attattttagaagtgctctgatatttatgaatacctaatatttt 7759245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 16256423 - 16256384
Alignment:
Q  21 agtgctctaatatttatgaatacctaatattttgttagaa 60  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  16256423 agtgctctaatatttatgaatacccaatatcttgttagaa 16256384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 35851742 - 35851671
Alignment:
Q  137 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 208  Q
    |||||||||| ||||||||||  |||||| || |||||||||||||||| || |||||| |  |||||||||    
T  35851742 aaaatcatgagattgttttaatattagagcgataaaaaagtaatttggtgttgaaatcctttcccttccctt 35851671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 9e-74; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 49622841 - 49623016
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  49622841 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaataatttggttttaaaatccctctc-ttcccttataaaccaaaca 49622939  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcc 297  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  49622940 catatttaattaaaatttcttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctcc 49623016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 121 - 295
Target Start/End: Complemental strand, 15544615 - 15544441
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| || ||||||    
T  15544615 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctcccctccccttatgaaccaaaca 15544516  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 295  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  15544515 catatttaattaaaatcccttccctcccatcatttgaaccaaacatgtatttaattgatatatctccccttccct 15544441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 123 - 294
Target Start/End: Complemental strand, 46833352 - 46833179
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaa--gtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| || ||| ||||||| || ||||||    
T  46833352 aagtgaataatagaaaaatcatgatattgttttaaggttagagggataaaaaaaagtaatttggttttaaaatccttcccctccccttatgaaccaaaca 46833253  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccc 294  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46833252 catatttaattaaaatcccttccctcccatcatttgaaccaaatatatatttaattgatatatctccccttccc 46833179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 29743599 - 29743408
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  29743599 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 29743500  T
Q  221 catatttgattaaaatctcttcc----------ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| ||||||||| |||||          ||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  29743499 catatttaattaaaatcccttcccttcccttctctcccatcatttgaaccaaacatatatttaattgatatatctccccttccattccctcc 29743408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 11376810 - 11376619
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  11376810 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 11376711  T
Q  221 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| ||||||||||||||||||          |||||||||||| |||| |||||||||||||||||||||||| || ||||||||||    
T  11376710 catatttaattaaaatctcttccctcccattccctcccatcatttgaaccaaacatatatttaattgatatatctcccttttcctcccctcc 11376619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 121 - 324
Target Start/End: Complemental strand, 42886864 - 42886646
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  42886864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 42886765  T
Q  221 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctc-----cccttccctcccctccatt 305  Q
    ||||||| ||||||||          | ||||||| |||||||||||| |||| ||||||||||||||||||||||     ||||||||| |||||||||    
T  42886764 catatttaattaaaatcccttccatccccttcccttccatcatttgaaccaaacatatatttaattgatatatctccccttcccttcccttccctccatt 42886665  T
Q  306 aaaaccactcccctcccct 324  Q
    |||||| ||||||||||||    
T  42886664 aaaacccctcccctcccct 42886646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 51621791 - 51621972
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||||| ||| |||  |||||| || ||||||    
T  51621791 tgaagtgaataatataaaaatcatgatattgttttaagattacagtgataaaaaagtaatttggttttaaaatctctcccctctccttatgaaccaaaca 51621890  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| |||||||||  || |||||||||||||||| |||| |||||| ||||||||||||||| |||||||| ||||||    
T  51621891 catatttaattaaaatccatttcctcccatcatttgaaccaaacatatatctaattgatatatctctccttcccttccctcc 51621972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 44565196 - 44565005
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||||| || ||||||    
T  44565196 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttgattttaaaatccctcccctccccttatgaaccaaaca 44565097  T
Q  221 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| ||| ||||||          ||||| |||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||    
T  44565096 catatttaattgaaatctctttcctccccttccttcccatcatttgaaccaaacatgtatttaattgatatatctccccttcccttccctcc 44565005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 261672 - 261798
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  261672 tgaagtgaataatataaaaatcatgatattgttttaaggttagagg-ataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 261770  T
Q  221 catatttgattaaaatctcttccctccc 248  Q
    ||||||| ||||||||||||||||||||    
T  261771 catatttaattaaaatctcttccctccc 261798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 2326768 - 2326959
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||| ||| ||| || |||| |    
T  2326768 tgaagtgaataatataaaaatcataatattgttttaaggttagaggggtaaaaaggtaatttggttttaaaatccctcccctccccgtatgaaccaaata 2326867  T
Q  221 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||| |||||||||||||||||||||| | ||||||    
T  2326868 catatttaattaaaataccttcactccccttccctcccatcatttgaaccaaacatatatataattgatatatctccccttccattccctcc 2326959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 49623081 - 49623160
Alignment:
Q  327 atggttggatgagtccatttgtttcaagatcacacctttcaaacttgaaacaataatatattgaacccccgccatactac 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49623081 atggttggatgagtccatttgtttcaagagcacacctttcaaacttgaaacaataatatattgaaaccccgccatactac 49623160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 49622727 - 49622781
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622727 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 49622781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 261558 - 261612
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  261558 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 261612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 2326655 - 2326709
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2326655 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 2326709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 15544729 - 15544675
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15544729 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 15544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 44565310 - 44565256
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44565310 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 44565256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 51621678 - 51621732
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51621678 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 51621732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 21374002 - 21374065
Alignment:
Q  239 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  21374002 cttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 21374065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 11376924 - 11376870
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  11376924 tagattattttagaagtgctttaatatttatgaatacctaatattttgttagaac 11376870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 29743711 - 29743658
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaa 60  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  29743711 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaa 29743658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 46833499 - 46833445
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  46833499 tagattattttagaattgttctaatatttatgaatacctaatattttgttagaac 46833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 37661901 - 37661989
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttccctt 208  Q
    ||||||||||||| |||||||| ||||| | ||||||  |||||||||  ||||||||||||| ||||||||||||||| ||| |||||    
T  37661901 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaagtaatttagttttaaaatccctcccctcccctt 37661989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 33505859 - 33505744
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  33505859 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 33505760  T
Q  221 catatttgattaaaat 236  Q
     |||||| ||| ||||    
T  33505759 tatatttaattgaaat 33505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 42886964 - 42886921
Alignment:
Q  10 attattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  42886964 attattttagaagtgctctaatatttatgaatacctaatatttt 42886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 49602734 - 49602810
Alignment:
Q  327 atggttggatgagtccatttgtttcaagatcacacctttcaaacttgaaacaataatatattgaacccccgccatac 403  Q
    ||||||||||||||||||||||||||| | ||   |||||||||| ||||| | | |||||||||||||| ||||||    
T  49602734 atggttggatgagtccatttgtttcaatagcaacactttcaaactggaaactagactatattgaacccccaccatac 49602810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 15429390 - 15429337
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaa 174  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||||||| |||||    
T  15429390 tgaagtgaataattttaaaatcatgagattgttttaagattagagggataaaaa 15429337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 11376616 - 11376582
Alignment:
Q  290 ttccctcccctccattaaaaccactcccctcccct 324  Q
    |||||||||||||||||||||| ||||||||||||    
T  11376616 ttccctcccctccattaaaacccctcccctcccct 11376582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 21374068 - 21374102
Alignment:
Q  290 ttccctcccctccattaaaaccactcccctcccct 324  Q
    |||||||||||||||||||||| ||||||||||||    
T  21374068 ttccctcccctccattaaaacccctcccctcccct 21374102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 25700306 - 25700350
Alignment:
Q  280 atatctccccttccctcccctccattaaaaccactcccctcccct 324  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||    
T  25700306 atatctcccctcccctcccctccgttaaaatccctcccctcccct 25700350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 121 - 305
Target Start/End: Complemental strand, 18227503 - 18227319
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  18227503 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 18227404  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccatt 305  Q
    ||||||| ||||||||| | |||||||||||||||||| |||| |||||||||||||||||| ||||| ||| || |||||||||    
T  18227403 catatttaattaaaatcccgtccctcccatcatttgaaccaaacatatatttaattgatatacctcccattctcttccctccatt 18227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 20219168 - 20219057
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  20219168 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 20219069  T
Q  223 tatttgattaaa 234  Q
    ||||| ||||||    
T  20219068 tatttaattaaa 20219057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 22113193 - 22113082
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  22113193 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 22113094  T
Q  223 tatttgattaaa 234  Q
    ||||| ||||||    
T  22113093 tatttaattaaa 22113082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 11455297 - 11455106
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| ||||||||  |||| | ||||||  ||||||| | ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  11455297 tgaagtgaataatttaaaaatc--gatactattttaatattagagg-ataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 11455201  T
Q  221 catatttgattaaaat-------------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
     ||||||||||||| |             | ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  11455200 tatatttgattaaattaatccctcccgtccccttccctcctatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 11455106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 20219289 - 20219243
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  20219289 tagattattttagaagtgctctaatatttatgaatacctaatatttt 20219243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 22113314 - 22113268
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22113314 tagattattttagaagtgctctaatatttatgaatacctaatatttt 22113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 17508520 - 17508420
Alignment:
Q  185 ttttaaaatccctctccttcccttataaatcaaacacatatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatc 284  Q
    ||||||||||||||   || |||| | |||||||||||| ||| |||| ||||||| ||||||| || |||||| |||| |||||||||||| | |||||    
T  17508520 ttttaaaatccctcaattttccttgtgaatcaaacacatttttaattagaatctctcccctcccctcttttgaaccaaacatatatttaattcaaatatc 17508421  T
Q  285 t 285  Q
    |    
T  17508420 t 17508420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 18227605 - 18227562
Alignment:
Q  18 agaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  18227605 agaagtgctctaatatttatgaatacctaatattatgtgagaac 18227562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 60 - 251
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  60 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 159  T
Q  221 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  160 catatttaattaaaatcccttccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccctttcccttccctcc 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 6610772 - 6610963
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  6610772 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 6610871  T
Q  221 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  6610872 catatttaattaaaatcccttccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccctttcccttccctcc 6610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 43633808 - 43633687
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  43633808 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 43633709  T
Q  221 catatttgattaaaatctcttccc 244  Q
    |  |||| ||||||||| ||||||    
T  43633708 c--atttaattaaaatcccttccc 43633687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 302
Target Start/End: Complemental strand, 2956107 - 2955918
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || |||||| |    
T  2956107 aagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctaccctccccttgtgaaccaaacata 2956008  T
Q  223 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  2956007 tatttgattaaaatctctccccttcccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 2955918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 36557223 - 36557098
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| |||| |||||| |    
T  36557223 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtaaaccaaacata 36557124  T
Q  223 tatttgattaaaatctcttccctccc 248  Q
    ||||||||||||||| || |||||||    
T  36557123 tatttgattaaaatccctcccctccc 36557098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 40977725 - 40977542
Alignment:
Q  124 agtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacat 223  Q
    |||||||||| |||||||  ||||| | ||||||  ||| ||||| |||| |||||||| ||||||||||||||| ||| ||||  | || |||||| ||    
T  40977725 agtgaataatttaaaaattgtgatactattttaatattatagggacaaaacagtaatttagttttaaaatccctcccctcccctcgtgaaccaaacatat 40977626  T
Q  224 atttgattaaaatctcttccctc-----ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    |||||||||||||| || |||||     |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  40977625 atttgattaaaatccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 40977542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 22976472 - 22976388
Alignment:
Q  242 ccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcccctag 326  Q
    |||| |||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  22976472 cccttccatcatttgaaccaaacatatatttaattgaaatatctccctttccctcccctccattaaaacccctcccctcccctag 22976388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 21595150 - 21595277
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||||  |||||| ||||| | || ||||||    
T  21595150 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctttctcctccccttctgaaccaaaca 21595249  T
Q  221 catatttgattaaaatctcttccctccc 248  Q
     |||||||||||||||| || |||||||    
T  21595250 tatatttgattaaaatccctcccctccc 21595277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 6610658 - 6610711
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaa 60  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  6610658 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaa 6610711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 43633919 - 43633868
Alignment:
Q  10 attattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  43633919 attattttaaaagtgctctaatatttatgaatacctaatattttgttagaac 43633868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 43047961 - 43047901
Alignment:
Q  242 ccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    |||||| |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  43047961 ccctcctatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 43047901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 43048083 - 43047984
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| | ||  | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| ||||| | || ||||||    
T  43048083 tgaagtgaataatttaaaaatcgttatgctattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctccccttgtgaaccaaaca 43047984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 22976560 - 22976474
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct 207  Q
    ||||||||||||| | |||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||| ||||||| ||||||||    
T  22976560 tgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaatatccctccccttccct 22976474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 36557087 - 36557047
Alignment:
Q  284 ctccccttccctcccctccattaaaaccactcccctcccct 324  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  36557087 ctccctttccctcccctccattaaaacccctcccctcccct 36557047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 27424325 - 27424357
Alignment:
Q  20 aagtgctctaatatttatgaatacctaatattt 52  Q
    |||||||||||||||||| ||||||||||||||    
T  27424325 aagtgctctaatatttataaatacctaatattt 27424357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 29008622 - 29008804
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||  || ||||||    
T  29008622 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccgtacgaaccaaaca 29008721  T
Q  221 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttcc 293  Q
    ||||||| ||||||||||          |||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  29008722 catatttaattaaaatctcttcactccccttccctcccatcatttgaatcaaacatatatttaattgatatatctccccttcc 29008804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 12313887 - 12314068
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||  ||||||||||||||| ||| ||| | | || ||||||    
T  12313887 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaattcagttttaaaatccctcccctccccctgtgaaccaaaca 12313986  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  12313987 catatttaattaaaatctcttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 12314068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 1828080 - 1827889
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1828080 tgaagtggataatttaaaaatcgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1827981  T
Q  221 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
     |||||||||||||||||          ||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  1827980 tatatttgattaaaatctctcccctccccttcccttccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 1827889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 123 - 302
Target Start/End: Complemental strand, 47645612 - 47645423
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  47645612 aagtgaataatttaaaaatcgtgatactattttaatattaaagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 47645513  T
Q  223 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||||||||||||          |||||||| ||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  47645512 tatttgattaaaatctctcccctccccttccctctcatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 47645423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 121 - 298
Target Start/End: Complemental strand, 33118828 - 33118636
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 215  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| || |||||||||| ||||||||||||||| ||| ||||     | | || |    
T  33118828 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataataaagtaatttagttttaaaatccctcccctcccctacccttgtgaacc 33118729  T
Q  216 aaacacatatttgattaaaatctcttccctcc----------catcatttgaagcaaatatatatttaattgatatatctccccttccctccc 298  Q
    ||||| ||||||||||||||||||||||||||          ||||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  33118728 aaacatatatttgattaaaatctcttccctccccttccctctcatcatttgaaccaaacatatatttaattgaaatatctccccttccctccc 33118636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 122 - 324
Target Start/End: Original strand, 44119040 - 44119256
Alignment:
Q  122 gaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 221  Q
    |||||||||||| |||||||| ||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| | | ||||| | || ||||||     
T  44119040 gaagtgaataatttaaaaatcgtgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccatccccttctgaaccaaacat 44119139  T
Q  222 atatttgattaaaatc--------------tcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaa 307  Q
    ||||||||||||||||               | |||| ||||||||||||| |||| |||||||||||||| |||| |  |||||||| |||||||||||    
T  44119140 atatttgattaaaatccatccccttcccatccctcccacccatcatttgaaccaaacatatatttaattgaaatatttttccttcccttccctccattaa 44119239  T
Q  308 aaccactcccctcccct 324  Q
    | |  ||||||||||||    
T  44119240 acctcctcccctcccct 44119256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 29008509 - 29008559
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgtta 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29008509 tagattattttagaagtgctctaatatttatgaatacctaatattttgtta 29008559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 40461283 - 40461338
Alignment:
Q  240 ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 295  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  40461283 ttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttccct 40461338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 42027803 - 42027849
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  42027803 tagattattttagaagtgctctaatatttatgaatacctaatatttt 42027849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 40040553 - 40040517
Alignment:
Q  17 tagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  40040553 tagaactgctttaatatttatgaatacctaatatttt 40040517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 121 - 295
Target Start/End: Original strand, 38024524 - 38024708
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||| || |||| || ||||||    
T  38024524 tgaagtgaataatataaaaatcatgatattgttttaaggttagaaggataaaaaagtaatttggttttaaaatctctcccctccctttatgaaccaaaca 38024623  T
Q  221 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 295  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  38024624 catatttaattaaaattcattccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccct 38024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 121 - 324
Target Start/End: Original strand, 6885015 - 6885234
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttag-agggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||||||||| |||| ||||||||||| || |||||    
T  6885015 tgaagtgaataatataaaaatcatgatattgttttaaggttagcacggataaaaaggtaatttgattttaaaattcctccccttcccttatgaaccaaac 6885114  T
Q  220 acatatttgattaaaatctcttc----------cctcccatcatttgaagcaaatatatatttaattgatatatctc-----cccttccctcccctccat 304  Q
    |||||||| ||||||||| ||||          |||||||||||||||| |||||||||||||||||||||||||||     | ||||||||||||||||    
T  6885115 acatatttaattaaaatcccttctctccccctacctcccatcatttgaaccaaatatatatttaattgatatatctctccttctcttccctcccctccat 6885214  T
Q  305 taaaaccactcccctcccct 324  Q
    ||||||| ||| ||||||||    
T  6885215 taaaacccctctcctcccct 6885234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 121 - 293
Target Start/End: Complemental strand, 29119085 - 29118913
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| | ||| | ||||||| ||||||||| ||||||||||||| ||||||||||||||| |||  | || | || ||||||    
T  29119085 tgaagtgaataatttaaaaatcgtaatactattttaagattagagggataaaaaagtaatttagttttaaaatccctcccctctctttgtgaaccaaaca 29118986  T
Q  221 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttcc 293  Q
     ||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||| ||||||||||||||    
T  29118985 tatatttgattaaaatctctcccctcccatcatttgaaccaatcatatatttaattgaaatatctccccttcc 29118913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 37563915 - 37563788
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||| || ||||||    
T  37563915 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctccccttatgaaccaaaca 37563816  T
Q  221 catatttgattaaaatctcttccctccc 248  Q
     |||||| ||||||||||||| ||||||    
T  37563815 tatatttaattaaaatctctttcctccc 37563788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 49284074 - 49284259
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||||||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||| |||| |||| | || ||||||    
T  49284074 tgaagtgaataatttaaaaatcatgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctcccctt-ccttgtgaaccaaaca 49284172  T
Q  221 catatttgattaaaat-----ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
     |||||||||||||||     | |||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  49284173 tatatttgattaaaatccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatctcccattcccttccctcc 49284259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 121 - 286
Target Start/End: Complemental strand, 55873687 - 55873512
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||  ||| ||||| | || ||||||    
T  55873687 tgaagtgaataatttaaaaatcatgatattattttaagattagagggataaaaaagtaatttggttttaaaatctcttccctccccttgtgaaccaaaca 55873588  T
Q  221 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctc 286  Q
    ||||||| ||||||||||          ||||||| | ||| |||||| |||||||||||||||||||||||||||    
T  55873587 catatttaattaaaatctcccccctccccttcccttctatcgtttgaaccaaatatatatttaattgatatatctc 55873512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 29191151 - 29191025
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||| || ||||||    
T  29191151 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctc-ccctcccgtatgaaccaaaca 29191053  T
Q  221 catatttgattaaaatctcttccctccc 248  Q
    |||| || ||||||||| |||| |||||    
T  29191052 catacttaattaaaatcccttcactccc 29191025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 230 - 321
Target Start/End: Complemental strand, 54975840 - 54975749
Alignment:
Q  230 ttaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcc 321  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  54975840 ttaaaatcccttccctcccatcatttgaaccaaatatatatttaattgatatatctccccttcccttccctccattaaaacccctcccctcc 54975749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 54975906 - 54975830
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccct 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  54975906 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatccct 54975830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 302
Target Start/End: Original strand, 42739582 - 42739771
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| ||||| | || |||||| |    
T  42739582 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctccccttgtgaaccaaacata 42739681  T
Q  223 tatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||||||||||          | ||||| |||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  42739682 tatttgattaaaatccctcccctccccttccgtcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 42739771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 1921336 - 1921145
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  1921336 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaattttgttttaaaatccctcccctaccctcgtgaaccaaaca 1921237  T
Q  221 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
     |||||||||||||||| || |||||          |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  1921236 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 1921145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 22443731 - 22443922
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  | ||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  22443731 tgaagtgaataatttaaaaattgtaatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 22443830  T
Q  221 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
     |||||||||||||||| || |||||          |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  22443831 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 22443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 123 - 246
Target Start/End: Complemental strand, 47497690 - 47497566
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 221  Q
    ||||||||||| | |||||||| | || ||||||||| ||||||||| |||||||||||||||| ||||||||| || ||| ||||| | || ||||||     
T  47497690 aagtgaataattttaaaatcataagatagttttaaggattagagggataaaaaagtaatttggtgttaaaatccttcacctccccttgtgaaccaaacat 47497591  T
Q  222 atatttgattaaaatctcttccctc 246  Q
    | |||| |||||||||||| |||||    
T  47497590 acatttaattaaaatctctcccctc 47497566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 29191258 - 29191204
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29191258 tagattattttagaagtgctttaatatttatgaatacctaatattttgttagaac 29191204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 54976019 - 54975965
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  54976019 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaac 54975965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 41279317 - 41279202
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 219  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| ||||||| | ||||||| ||  ||| ||||| | || ||||     
T  41279317 tgaagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaaagcaatttgg-tataaaatctcttccctccccttgtgaaccaaat 41279219  T
Q  220 acatatttgattaaaat 236  Q
    |||||||| ||||||||    
T  41279218 acatatttaattaaaat 41279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 38024414 - 38024465
Alignment:
Q  10 attattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  38024414 attattttagaagtgctctaatatttatgaatacctaatattttattagaac 38024465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 8067268 - 8067199
Alignment:
Q  135 taaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctcctt 203  Q
    |||||||||||||||||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||||    
T  8067268 taaaaatcatgatattgttttaagattaaagggataaaaaaagtaacttggatttaaaatccctctcctt 8067199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 39593207 - 39593379
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 221  Q
    ||||| ||||| | |||||||||| || ||||||||| ||||| ||| ||||| |||||||||| |||||| ||||| ||| ||||| | || ||||||     
T  39593207 aagtggataattttaaaatcatgagatagttttaaggattagaaggataaaaaggtaatttggtgttaaaa-ccctcacctccccttctgaaccaaacat 39593305  T
Q  222 atatttgattaaaatctcttccctc-----ccatcatttgaagcaaatatatatttaattgatatatctcccct 290  Q
    | |||| |||||||||||| |||||     || || |||||| |||| | |||||||||| |||||||||||||    
T  39593306 acatttaattaaaatctctcccctccccttccctcttttgaaccaaacacatatttaattaatatatctcccct 39593379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 6884912 - 6884958
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6884912 tagattattttagaagtgctctaatatttatgaatacttaatatttt 6884958  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 37564027 - 37563973
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||| |||||||    
T  37564027 tagattattttagaaacgctctaatatttatgaatacctaatattttattagaac 37563973  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 30548114 - 30548051
Alignment:
Q  239 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    |||||||||| || |||||| |||| | |||||||||| | |||||||||||||||||||||||    
T  30548114 cttccctcccctcttttgaaccaaacacatatttaattaaaatatctccccttccctcccctcc 30548051  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 55873804 - 55873758
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||    
T  55873804 tagattatcttagaagtgctataatatttatgaatacctaatatttt 55873758  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 22443925 - 22443959
Alignment:
Q  290 ttccctcccctccattaaaaccactcccctcccct 324  Q
    |||||||||||||||||||||| ||||||||||||    
T  22443925 ttccctcccctccattaaaacccctcccctcccct 22443959  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 38024718 - 38024752
Alignment:
Q  290 ttccctcccctccattaaaaccactcccctcccct 324  Q
    |||||||||||||||||||||| ||||||||||||    
T  38024718 ttccctcccctccattaaaacccctcccctcccct 38024752  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 42739774 - 42739808
Alignment:
Q  290 ttccctcccctccattaaaaccactcccctcccct 324  Q
    |||||||||||||||||||||| ||||||||||||    
T  42739774 ttccctcccctccattaaaacccctcccctcccct 42739808  T

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Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 127 - 294
Target Start/End: Original strand, 30411399 - 30411577
Alignment:
Q  127 gaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatt 226  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||| |||||    
T  30411399 gaataatataaaaatcatgatattgttttaaggctagagggataaaaaagtaatttggttttaaaatccatcccattcccttatgaatcaaacatatatt 30411498  T
Q  227 tgattaaaatct-----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccc 294  Q
    | ||||||||||           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  30411499 taattaaaatctcttccttcccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccc 30411577  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 121 - 287
Target Start/End: Complemental strand, 35384347 - 35384171
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| || |||| || ||||||    
T  35384347 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctcccattatgaaccaaaca 35384248  T
Q  221 catatttgattaaaatctcttccc----------tcccatcatttgaagcaaatatatatttaattgatatatctcc 287  Q
    ||||||| ||||||||||||||||          |||||||||||||| |||| |||||||||||||||||||||||    
T  35384247 catatttaattaaaatctcttcccttcccttccgtcccatcatttgaaccaaacatatatttaattgatatatctcc 35384171  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 1751486 - 1751295
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1751486 tgaagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1751387  T
Q  221 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
     |||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  1751386 tatatttgattaaaatctctcccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 1751295  T

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Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 302
Target Start/End: Original strand, 11726579 - 11726762
Alignment:
Q  129 ataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttg 228  Q
    ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |||||||    
T  11726579 ataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacatatatttg 11726678  T
Q  229 attaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    |||||||||||          ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  11726679 attaaaatctctcccctccctttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 11726762  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 10329701 - 10329894
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaa--aagtaatttggttttaaaatccctctccttcccttataaatcaaa 218  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||  ||||||||| ||||||||||||||| | | ||||| | || ||||    
T  10329701 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaaagtaatttagttttaaaatccctcccatccccttgtgaaccaaa 10329800  T
Q  219 cacatatttgattaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    || ||||||||||||||||||          ||||||||||||||||||| |||| |||||||||||||| |||||||||||||| | ||||||    
T  10329801 catatatttgattaaaatctctcccctctcattccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcctttccctcc 10329894  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 37276135 - 37275944
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||| | ||||||||||| ||| ||| ||||| | || |||||     
T  37276135 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatgtagttttaaaatctctcccctccccttgtgaaccaaacc 37276036  T
Q  221 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
     |||||||||| ||||          | ||||||||||| |||||||| |||| |||||||||||||| |||||||||||||| | ||||||    
T  37276035 tatatttgattgaaatccctcccctccccttccctcccaccatttgaaccaaacatatatttaattgaaatatctccccttcctttccctcc 37275944  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 35384460 - 35384406
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  35384460 tagattattttagaagtgctctaatatttatgaatacctaatattttgttcgaac 35384406  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 30411279 - 30411333
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  30411279 tagattattttagaagtgctctaatatttatggatatctaatattttgttagaac 30411333  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 37275249 - 37275336
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 208  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||||| ||||||||||| ||| ||| |||||    
T  37275249 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatttagttttaaaatctctcccctcccctt 37275336  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 37275334 - 37275397
Alignment:
Q  239 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
    ||||||||||| |||||||| |||| |||||||||||||| ||||||||| |||| | ||||||    
T  37275334 cttccctcccaccatttgaaccaaacatatatttaattgaaatatctcccattcctttccctcc 37275397  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 25595631 - 25595669
Alignment:
Q  284 ctccccttccctcccctccattaaaaccactcccctccc 322  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  25595631 ctccctttccctcccctccattaaaacccctcccctccc 25595669  T

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Target: scaffold0155 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 123 - 300
Target Start/End: Complemental strand, 28174 - 27987
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||  |||||||||||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  28174 aagtgaataagttaaaaatcatgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 28075  T
Q  223 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccct 300  Q
    ||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||    
T  28074 tatttgattaaaatctctcccgtccccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccct 27987  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 46485484 - 46485675
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  || || ||||||||  ||||||||| ||||||||||||| ||||||||||||||  ||| ||||| | || ||||||    
T  46485484 tgaagtgaataatttaaaaattgtgttactgttttaatattagagggataaaaaagtaatttagttttaaaatccctgccctccccttgtgaaccaaaca 46485583  T
Q  221 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 302  Q
      ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||    
T  46485584 tgtatttgattaaaatccctcccttccccttccctcccatcatttgaaccaaacatatatttaattaaaatatctccccttcccttccctcc 46485675  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 7311490 - 7311392
Alignment:
Q  137 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttgattaaaat 236  Q
    |||||||||| ||||||||||| ||||||||| ||||   ||||||| |||||||||| |||  || ||||| || | |||||| |||||| ||||||||    
T  7311490 aaaatcatgagattgttttaagattagagggataaaa---taatttgattttaaaatctctcgtctccccttctacaccaaacatatatttaattaaaat 7311394  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 46485678 - 46485712
Alignment:
Q  290 ttccctcccctccattaaaaccactcccctcccct 324  Q
    |||||||||||||||||||||| ||||||||||||    
T  46485678 ttccctcccctccattaaaacccctcccctcccct 46485712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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