View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21461_low_2 (Length: 406)
Name: NF21461_low_2
Description: NF21461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21461_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 21 - 400
Target Start/End: Complemental strand, 43002219 - 43001839
Alignment:
| Q |
21 |
acacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatataattcaagctataccgtgtgacac |
119 |
Q |
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| T |
43002219 |
acacacttttattatggcatgtaacctcaattattcaacactcaccctctcatttaccaactatatatgtatatataattcaaggtataccgtgtgacac |
43002120 |
T |
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| Q |
120 |
attgcacaagcctctaaaactttattgtttcacacaatattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttct |
219 |
Q |
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| T |
43002119 |
attgcacaagcctctaaaactttattgtttcacacaatattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttct |
43002020 |
T |
|
| Q |
220 |
cacattcctttctttgcaattaacagaagctaggaccaataacctttgaaaattctaaagaaactaattccatttctcttcatcaatatttgtttgcttc |
319 |
Q |
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| T |
43002019 |
cacattcctttctttgcaattaacagaagctaggaccaataacctttgaaaattctaaagaaactaattccatttctcttcatccatatttgttagcttc |
43001920 |
T |
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| Q |
320 |
acaaaacttgaactagtaatcaactcattcacactagtatttccatacgatgtcgcaactaatgatccactcctttgcttc |
400 |
Q |
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| T |
43001919 |
acaaaacttgaactagtaatcaactcattcacactagtatttctatacgatgtcgcaactaatgatccactcctttgcttc |
43001839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 34 - 400
Target Start/End: Complemental strand, 5512549 - 5512182
Alignment:
| Q |
34 |
atggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatataattcaagctataccgtgtgacacattgcacaagcct |
132 |
Q |
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| T |
5512549 |
atggcatgtaacctcaattattcaacattcacactttcacttaccaactatatatctatatataattcaaggtatacggtgtgacacattgcacagacct |
5512450 |
T |
|
| Q |
133 |
ctaaaactttattgtttcacacaatattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttct |
232 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
5512449 |
ttaaaagtttattgtttcacacaatattcatttataatgcctctaaaactggcatgatgttccaagtctttgtctctgcctctttcccaaattcctttct |
5512350 |
T |
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| Q |
233 |
ttgcaattaacagaagctaggaccaataacctttgaaaattctaaagaaactaattccatttctcttcatcaatatttgtttgcttcacaaaacttgaac |
332 |
Q |
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| T |
5512349 |
ttgcaattaacaaaagctgggaccaataacctttgaaaattctcaagaaactggttccatttctcttcatccatatctgtcagcttcacaaaacttgaac |
5512250 |
T |
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| Q |
333 |
tagtaatcaactcattcacactagtatttccatacgatgtcgcaactaatgatccactcctttgcttc |
400 |
Q |
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| T |
5512249 |
tagtaatcaactcattcacactagtatttccagatgatgtcccaactaatgatccactcctttgcttc |
5512182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 2773095 - 2773190
Alignment:
| Q |
21 |
acacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatat--aattcaagctataccgtg |
113 |
Q |
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| T |
2773095 |
acacacttttgttatggcatgtaacctcaattattcaacactcaccctctcatttaccagctatatatgtatatatacaattcaagctgtaccgtg |
2773190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 2773268 - 2773363
Alignment:
| Q |
21 |
acacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatat--aattcaagctataccgtg |
113 |
Q |
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| T |
2773268 |
acacacttttgttatggcatgtaacctcaattattcaacactcaccctctcatttaccagctatatatgtatatatacaattcaagctgtaccgtg |
2773363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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