View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21461_low_3 (Length: 386)

Name: NF21461_low_3
Description: NF21461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21461_low_3
NF21461_low_3
[»] chr3 (10 HSPs)
chr3 (1-368)||(1106948-1107326)
chr3 (3-368)||(1049828-1050208)
chr3 (165-368)||(1076922-1077125)
chr3 (165-368)||(1299895-1300098)
chr3 (3-368)||(1090550-1090931)
chr3 (214-365)||(13854743-13854894)
chr3 (3-123)||(1076744-1076864)
chr3 (3-123)||(1300156-1300276)
chr3 (74-115)||(5854815-5854856)
chr3 (77-118)||(13854598-13854639)
[»] scaffold0090 (2 HSPs)
scaffold0090 (214-365)||(8602-8753)
scaffold0090 (70-118)||(8860-8908)
[»] chr2 (2 HSPs)
chr2 (290-368)||(2662816-2662894)
chr2 (287-353)||(34328558-34328624)
[»] chr5 (4 HSPs)
chr5 (214-365)||(28419535-28419686)
chr5 (246-351)||(22689686-22689791)
chr5 (53-117)||(22689931-22689995)
chr5 (258-341)||(28432810-28432893)
[»] chr8 (5 HSPs)
chr8 (258-350)||(23555158-23555250)
chr8 (49-116)||(23360273-23360340)
chr8 (14-115)||(23554723-23554824)
chr8 (74-116)||(23561106-23561148)
chr8 (262-335)||(23392841-23392914)
[»] chr6 (2 HSPs)
chr6 (72-114)||(3979622-3979664)
chr6 (289-365)||(3979368-3979444)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 1106948 - 1107326
Alignment:
Q  1 cgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtggttttgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1106948 cgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtggttttgga 1107047  T
Q  101 ccggtatataaggtaaacatgcaataacacttggttataatagatgagaaaacccttgaatctctttt-------------tctaactataaaatttagg 187  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||             |||||||||||||||||||    
T  1107048 ccggtatataaggtaaacatgcaataac--ttggttataatagatgagaaaacccttgagtctctttttctaacaattttttctaactataaaatttagg 1107145  T
Q  188 gtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107146 gtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttc 1107245  T
Q  288 gaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107246 gaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 1107326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 368
Target Start/End: Original strand, 1049828 - 1050208
Alignment:
Q  3 aacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtggttttggacc 102  Q
    ||||||||||||||||||| ||||||||| | || ||||| ||   |||||| |||||||| || ||  ||||||| || ||||||||||| ||||||||    
T  1049828 aacaagattttgagcttcctttcttcaatatttcaacaatgataagtgccacaaatgacttttcgaactataacaaactcggagaaggtggctttggacc 1049927  T
Q  103 ggtatataaggtaaacatgcaat-aaca-cttggttataatagatgagaaaacccttgaatctctttttctaac-------------tataaaatttagg 187  Q
     ||||||||||||||||||||   |||| ||||  || || | |||||||| | ||||| |||| |||||||||             ||||| |||||||    
T  1049928 agtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttgagtctcattttctaacaattttttccaactataatatttagg 1050027  T
Q  188 gtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttc 287  Q
    ||||||| | |  |||  | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |    
T  1050028 gtacactagctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcgaaacaaggaacaagagaatttaaaaatgaagttatattatgtgc 1050127  T
Q  288 gaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 368  Q
     ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  1050128 aaaacttcaacaccgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgcttatctatgaatatat 1050208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 165 - 368
Target Start/End: Original strand, 1076922 - 1077125
Alignment:
Q  165 tttttctaactataaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaattt 264  Q
    |||||| |||||||| |||||||||||||| | | | ||  | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  1076922 tttttccaactataatatttagggtacactagctatggatgggcgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaattt 1077021  T
Q  265 aaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaat 364  Q
    |||||||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  1077022 aaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgcttatctatgaat 1077121  T
Q  365 atat 368  Q
    ||||    
T  1077122 atat 1077125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 165 - 368
Target Start/End: Complemental strand, 1300098 - 1299895
Alignment:
Q  165 tttttctaactataaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaattt 264  Q
    |||||| |||||||| |||||||||||||| | | | ||  | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  1300098 tttttccaactataatatttagggtacactagctatggatgggcgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaattt 1299999  T
Q  265 aaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaat 364  Q
    |||||||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  1299998 aaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgcttatctatgaat 1299899  T
Q  365 atat 368  Q
    ||||    
T  1299898 atat 1299895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 368
Target Start/End: Original strand, 1090550 - 1090931
Alignment:
Q  3 aacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtggttttggacc 102  Q
    ||||||||||||||||||| || |||||| | |||||||| ||   |||||| |||||||| || ||  ||||||| |||||||||||||| ||||||||    
T  1090550 aacaagattttgagcttcctttgttcaatatttctacaatgataagtgccacaaatgacttttcgaactataacaaacttggagaaggtggctttggacc 1090649  T
Q  103 ggtatataaggtaaacatgca-ataac-acttggttataatagatgagaaaaccctt-gaatctctttttctaa-------------ctataaaatttag 186  Q
     ||||||||||||||||||||   ||| |||||  || || | |||||||| | ||| || |||| ||| ||||             |||||| ||||||    
T  1090650 agtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttag 1090749  T
Q  187 ggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgtt 286  Q
    |||||||| | |  |||  | | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||     
T  1090750 ggtacactagctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtg 1090849  T
Q  287 cgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 368  Q
    | ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  1090850 caaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgcttatctatgaatatat 1090931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 365
Target Start/End: Original strand, 13854743 - 13854894
Alignment:
Q  214 attgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtca 313  Q
    ||||| ||||||||||||||| | |||||   ||||||| | | ||| ||| ||||||||||||| |||||| | ||||||||||||||||||||||| |    
T  13854743 attgctgtcaaaaggctttcaaggagttctggacaaggacctaaagagttttaaaatgaagttatattatgtactaaacttcaacaccgaaatcttgtaa 13854842  T
Q  314 aggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaata 365  Q
    ||||| |||||||||||||| ||||||||||||||||| | || ||||||||    
T  13854843 aggttgttggttgttgtattgaaggagaagagaaaatgttgatatatgaata 13854894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 1076744 - 1076864
Alignment:
Q  3 aacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtggttttggacc 102  Q
    ||||||||||||||||||| ||||||||| | |||||||| ||   |||||| ||| |||| ||  |  |||| || |||||||||||||| ||||||||    
T  1076744 aacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcagactataataaacttggagaaggtggctttggacc 1076843  T
Q  103 ggtatataaggtaaacatgca 123  Q
     ||||||||||||||||||||    
T  1076844 agtatataaggtaaacatgca 1076864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 1300276 - 1300156
Alignment:
Q  3 aacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtggttttggacc 102  Q
    ||||||||||||||||||| ||||||||| | |||||||| ||   |||||| ||| |||| ||  |  |||| || |||||||||||||| ||||||||    
T  1300276 aacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcagactataataaacttggagaaggtggctttggacc 1300177  T
Q  103 ggtatataaggtaaacatgca 123  Q
     ||||||||||||||||||||    
T  1300176 agtatataaggtaaacatgca 1300156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 5854815 - 5854856
Alignment:
Q  74 aacaagcttggagaaggtggttttggaccggtatataaggta 115  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  5854815 aacaagctgggagaaggtggttttggaccggtatacaaggta 5854856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 13854598 - 13854639
Alignment:
Q  77 aagcttggagaaggtggttttggaccggtatataaggtaaac 118  Q
    ||||| || ||||||||||||||||| |||||||||||||||    
T  13854598 aagctcggggaaggtggttttggaccagtatataaggtaaac 13854639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 214 - 365
Target Start/End: Complemental strand, 8753 - 8602
Alignment:
Q  214 attgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtca 313  Q
    ||||| ||||||||||||||| | |||||   |||||||   | ||| ||||| ||||||||||| |||||| | ||||||||||||||||||||||| |    
T  8753 attgctgtcaaaaggctttcaaggagttctggacaaggacttaaagagtttaagaatgaagttatattatgtactaaacttcaacaccgaaatcttgtta 8654  T
Q  314 aggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaata 365  Q
    ||||| |||||||||||||| ||||||| ||||||||| | || ||||||||    
T  8653 aggttgttggttgttgtattgaaggagatgagaaaatgttgatttatgaata 8602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 8908 - 8860
Alignment:
Q  70 tgataacaagcttggagaaggtggttttggaccggtatataaggtaaac 118  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||    
T  8908 tgataacaagctcggtgaaggtggttttggaccggtatacaaggtaaac 8860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 2662894 - 2662816
Alignment:
Q  290 aacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 368  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||| |  |||||||||||||    
T  2662894 aacttcaacatcgaaatctcgtcaagcttcttggttgttgtattcaaggagaagataaaatgttggtctatgaatatat 2662816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 34328558 - 34328624
Alignment:
Q  287 cgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgct 353  Q
    ||||||||||||||||||||||||| ||| |||||||||||||  || ||||||| |||||||||||    
T  34328558 cgaaacttcaacaccgaaatcttgtaaagcttcttggttgttgccttgaaggagaggagaaaatgct 34328624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 365
Target Start/End: Original strand, 28419535 - 28419686
Alignment:
Q  214 attgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtca 313  Q
    ||||| |||||||| |||||||||| |||  | |||||| | | |||||||||||||||||| || || ||    ||| | ||||| ||||||||||| |    
T  28419535 attgcagtcaaaagactttcaggaaattctgagcaaggatcgaaagaatttaaaaatgaagtcatattgtgcgttaaattgcaacatcgaaatcttgtta 28419634  T
Q  314 aggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaata 365  Q
    |||||||||||||||| ||| ||||||| || ||| || | |||||||||||    
T  28419635 aggttcttggttgttgcattgaaggagatgaaaaactgttaatctatgaata 28419686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 351
Target Start/End: Complemental strand, 22689791 - 22689686
Alignment:
Q  246 acaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagag 345  Q
    ||||||| ||| |||||||||||||||||| || || ||  | ||| | ||||| ||||||||||| |||||| |||||||||| ||| ||||||| |||    
T  22689791 acaaggatcaatagaatttaaaaatgaagtcatattgtgcgctaaattgcaacatcgaaatcttgttaaggttattggttgttgcattgaaggagacgag 22689692  T
Q  346 aaaatg 351  Q
    ||||||    
T  22689691 aaaatg 22689686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 22689995 - 22689931
Alignment:
Q  53 accaatgacttctccaatgataacaagcttggagaaggtggttttggaccggtatataaggtaaa 117  Q
    |||||| ||||||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||    
T  22689995 accaataacttctcaaatgataataaacttggtgaaggtggttttggaccggtatacaaggtaaa 22689931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 28432810 - 28432893
Alignment:
Q  258 agaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggaga 341  Q
    |||||||||||||||||| || || ||| | ||| | ||||| ||||||||||| |||||| |||||||||| ||| |||||||    
T  28432810 agaatttaaaaatgaagtcatattgtgtgctaaattgcaacatcgaaatcttgttaaggttattggttgttgcattgaaggaga 28432893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 23555158 - 23555250
Alignment:
Q  258 agaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaat 350  Q
    ||||||||| | |||||| || |||||| | ||||||||||||||||||||||| |||||  |||||||||| ||| ||  ||| ||||||||    
T  23555158 agaatttaagagtgaagtaatattatgtgctaaacttcaacaccgaaatcttgttaaggtgattggttgttgcattgaaaaagatgagaaaat 23555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 23360273 - 23360340
Alignment:
Q  49 tgccaccaatgacttctccaatgataacaagcttggagaaggtggttttggaccggtatataaggtaa 116  Q
    |||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| || || ||||||||||    
T  23360273 tgccactaatgacttctcaaatgacaacaaacttggtgaaggtggttttggtcctgtttataaggtaa 23360340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 23554723 - 23554824
Alignment:
Q  14 gagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtggttttggaccggtatataagg 113  Q
    |||||||| |||||  |||| || |||||| ||||||| || ||| | ||||| |  || ||||| ||||| ||||||||||||||||||||||| ||||    
T  23554723 gagcttcctttctttgatctttcaacaatacttgatgcaactaataagttctcaacggacaacaaacttggtgaaggtggttttggaccggtatacaagg 23554822  T
Q  114 ta 115  Q
    ||    
T  23554823 ta 23554824  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 23561148 - 23561106
Alignment:
Q  74 aacaagcttggagaaggtggttttggaccggtatataaggtaa 116  Q
    |||||| |||||||||||||||||||||| ||||| |||||||    
T  23561148 aacaagattggagaaggtggttttggacctgtatacaaggtaa 23561106  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 23392841 - 23392914
Alignment:
Q  262 tttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattca 335  Q
    ||||||||||||||| | ||   | |||||||||||||||| |||||||| ||| |||||||||| || |||||    
T  23392841 tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 23392914  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 3979664 - 3979622
Alignment:
Q  72 ataacaagcttggagaaggtggttttggaccggtatataaggt 114  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  3979664 ataacaaacttggagaaggtggttttggaccggtatacaaggt 3979622  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 3979444 - 3979368
Alignment:
Q  289 aaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaata 365  Q
    |||||||||||||| |||||||||||  ||||||| || || ||| |||||| ||| | |||||| |||||||||||    
T  3979444 aaacttcaacaccgtaatcttgtcaaacttcttggatgctgcattgaaggaggagaaacaatgctgatctatgaata 3979368  T

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