View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21461_low_5 (Length: 331)

Name: NF21461_low_5
Description: NF21461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21461_low_5
NF21461_low_5
[»] chr6 (3 HSPs)
chr6 (18-275)||(31559182-31559439)
chr6 (167-259)||(28020033-28020125)
chr6 (153-249)||(7558027-7558122)
[»] chr5 (4 HSPs)
chr5 (154-236)||(8462033-8462115)
chr5 (155-248)||(33737379-33737471)
chr5 (153-248)||(10473227-10473321)
chr5 (203-252)||(37031476-37031525)
[»] chr7 (4 HSPs)
chr7 (154-259)||(34218506-34218611)
chr7 (153-248)||(18310971-18311066)
chr7 (153-237)||(43380519-43380603)
chr7 (154-224)||(37346138-37346208)
[»] chr2 (2 HSPs)
chr2 (152-237)||(36401177-36401262)
chr2 (154-237)||(31467648-31467732)
[»] chr3 (2 HSPs)
chr3 (153-224)||(33850138-33850209)
chr3 (204-248)||(39684331-39684375)
[»] chr8 (1 HSPs)
chr8 (153-259)||(35809831-35809937)
[»] chr4 (2 HSPs)
chr4 (160-223)||(23770085-23770148)
chr4 (153-237)||(47577973-47578057)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 31559439 - 31559182
Alignment:
Q  18 gtatgcaaacccctcataggatgtcttggtgggtagtggtagagggaatgtatttggtgggtagagtactacttttacttgttgatctatgatggtgaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31559439 gtatgcaaacccctcataggatgtcttggtgggtagtggtagagggaatgtatttggtgggtagagtactacttttacttgttgatatatgatggtgaat 31559340  T
Q  118 ttagtaccacttatacttgcggatggacgaatctagaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttat 217  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  31559339 ttagtaccacttatacgtacggacggacgaatctagaatacattttaagtgtggttaaataagtagcaactgaaataatgatcgatttttaatattttat 31559240  T
Q  218 actttagtgacagaattttcaatcattatttatgttgttaaatattgtattagagacc 275  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  31559239 actttagcgacagaattttcagtcattatttatgtcgttaaatattgtattagagacc 31559182  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 28020033 - 28020125
Alignment:
Q  167 tgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttcaatcattatttatgttgttaaa 259  Q
    ||||| ||||||||||| |||||| |||| ||||  ||||||||||||||||||||| |||  ||||||||  ||| ||||||||| ||||||    
T  28020033 tgtggctaaataagtagcaactgatataacgatcgatttttaatattttatactttaatgattgaattttcggtcactatttatgtcgttaaa 28020125  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 7558122 - 7558027
Alignment:
Q  153 gaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttcaatcattattta 249  Q
    ||||| ||||||||||||| ||||||||||| |  ||||| ||| |  | |||||||||||||||||||||  ||| || |||| | ||||||||||    
T  7558122 gaatatattttaagtgtggctaaataagtagcagttgaaaaaataaaga-tttttaatattttatactttaacgacggattttttagtcattattta 7558027  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 8462033 - 8462115
Alignment:
Q  154 aatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaatttt 236  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||  |||||||||||||||||||||||||  |||||||    
T  8462033 aatacatttcaagtgtgggtaaataagtagcaactgaaataatgatcgatttttaatattttatactttagtgattgaatttt 8462115  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 33737471 - 33737379
Alignment:
Q  155 atacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttcaatcattattt 248  Q
    |||||||||||||||||  |||||||||| ||  |||  |||||||  |||||||||||||||||||||||||| |||| ||| |||| |||||    
T  33737471 atacattttaagtgtggcaaaataagtagcaatcgaag-aatgatcgatttttaatattttatactttagtgactgaatcttcgatcactattt 33737379  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 10473321 - 10473227
Alignment:
Q  153 gaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttcaatcattattt 248  Q
    ||||||||||||||||||| ||||||||||| |||  ||| || ||| | ||||||||||||||||  |||| ||| |||||||| |||| |||||    
T  10473321 gaatacattttaagtgtggctaaataagtagcaac-caaaaaaagattaatttttaatattttatatcttagcgactgaattttcgatcactattt 10473227  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 37031476 - 37031525
Alignment:
Q  203 tttttaatattttatactttagtgacagaattttcaatcattatttatgt 252  Q
    |||||||||||||||| ||||||||| || |||||  |||||||||||||    
T  37031476 tttttaatattttatattttagtgactgagttttcggtcattatttatgt 37031525  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 34218506 - 34218611
Alignment:
Q  154 aatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttcaatcattatttatgtt 253  Q
    |||||||||||||||||||||||||||||| || |||| | | || || |||||||||||||||||||||| ||  |||||||| |||| |||||||||     
T  34218506 aatacattttaagtgtggttaaataagtagcaattgaattgacgaacaatttttaatattttatactttagcgattgaattttcgatcactatttatgtc 34218605  T
Q  254 gttaaa 259  Q
    ||||||    
T  34218606 gttaaa 34218611  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 18311066 - 18310971
Alignment:
Q  153 gaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttcaatcattattt 248  Q
    ||||||||||||||||||| |||||||||||| || |||||||| |||  |||||||||||||||| |||||  || ||||||| | |||||||||    
T  18311066 gaatacattttaagtgtggctaaataagtagttaccgaaataattatcgatttttaatattttatattttagcaactgaatttttagtcattattt 18310971  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 43380519 - 43380603
Alignment:
Q  153 gaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttc 237  Q
    |||||||||| |||| ||  ||||||||||| ||||||||||||||||  | |||||||||||||||||||| |||  |||||||    
T  43380519 gaatacatttcaagtatgactaaataagtagcaactgaaataatgatcgatctttaatattttatactttagcgactaaattttc 43380603  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 37346208 - 37346138
Alignment:
Q  154 aatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttag 224  Q
    ||||||||| ||| |||| ||||||||||| |||| ||||||||||||  ||||||||||||||| |||||    
T  37346208 aatacatttaaagcgtggctaaataagtagcaactaaaataatgatcaacttttaatattttatattttag 37346138  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 36401177 - 36401262
Alignment:
Q  152 agaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttc 237  Q
    ||||||||||| |||||||| ||||||||||| |||||||| ||||||   |||||||||||||||||||||||||  ||||||||    
T  36401177 agaatacatttcaagtgtggctaaataagtaggaactgaaacaatgattgatttttaatattttatactttagtgattgaattttc 36401262  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 31467732 - 31467648
Alignment:
Q  154 aatacattttaagtgtggttaaataagtagtaactgaaataatgatc-attttttaatattttatactttagtgacagaattttc 237  Q
    ||||||||| |||||||| |||||||||||  || ||| ||| |||  |||||||||||||||||||||||| ||| ||||||||    
T  31467732 aatacatttcaagtgtggctaaataagtagcgaccgaattaacgattgattttttaatattttatactttagcgactgaattttc 31467648  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 33850138 - 33850209
Alignment:
Q  153 gaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttag 224  Q
    ||||||||||| |||||| ||||||||||||| | |||||||  |||  |||||||||||||||||||||||    
T  33850138 gaatacattttcagtgtgattaaataagtagtgaatgaaatagcgattgttttttaatattttatactttag 33850209  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 39684331 - 39684375
Alignment:
Q  204 ttttaatattttatactttagtgacagaattttcaatcattattt 248  Q
    |||||||||||||||||||||||||  |||| || ||||||||||    
T  39684331 ttttaatattttatactttagtgaccaaattatcgatcattattt 39684375  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 35809831 - 35809937
Alignment:
Q  153 gaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttcaatcattatttatgt 252  Q
    |||| ||||| |||||||| ||||||| ||| ||   |||||| ||||  |||||||||||||||||||||   || |||||||| |||| |||||||||    
T  35809831 gaatgcatttcaagtgtggctaaataaatagaaatcaaaataacgatcgatttttaatattttatactttaacaactgaattttctatcactatttatgt 35809930  T
Q  253 tgttaaa 259  Q
     ||||||    
T  35809931 cgttaaa 35809937  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 23770085 - 23770148
Alignment:
Q  160 ttttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatacttta 223  Q
    |||||||||| ||||||||||||  ||| ||||||||||||  ||| |||||||||||| ||||    
T  23770085 ttttaagtgtagttaaataagtatcaaccgaaataatgatcgatttataatattttatatttta 23770148  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 47577973 - 47578057
Alignment:
Q  153 gaatacattttaagtgtggttaaataagtagtaactgaaataatgatcattttttaatattttatactttagtgacagaattttc 237  Q
    ||||||||||||| ||| | ||||||||||  |||  |||||| |||   |||||||||||||||||||||| ||  ||||||||    
T  47577973 gaatacattttaaatgttgctaaataagtaacaaccaaaataacgatggatttttaatattttatactttagcgattgaattttc 47578057  T

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