View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_high_15 (Length: 304)
Name: NF21462_high_15
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 31386410 - 31386703
Alignment:
| Q |
1 |
tcctttgatataatgtatagccagatctctacatatatttggaagatcatatccttctaagttattgatctcagcatgcagagaatgcacactgcaataa |
100 |
Q |
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| T |
31386410 |
tcctttgatataatgtatagccagatctctacatatatttggaagatcatatccttctaagttattgatctcagcatgcagagaatgcacgctgcaataa |
31386509 |
T |
|
| Q |
101 |
ctgtagtaatcatttatgttcagaagttcaataactccagtacttttactttgacatgattgcagcataatcgtcaacgaaaccagcaaagtaatcaata |
200 |
Q |
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| T |
31386510 |
ctgtagtaatcatttatgttcagaagttcaataactccagtacttttactttgacatgattgcagcataatcgtcaacgaaaccagcaaagtaatcaata |
31386609 |
T |
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| Q |
201 |
aaactccaagagtgacaagtgaagcaaaaaatattgttgctgtaagagatgtcatgtagaatcctgattctatcccataatggcttgatgatgt |
294 |
Q |
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| T |
31386610 |
aaactccaagagtgacaagtgaagcaaaaaatattgttgctgtaagagatgtcatgtagaatcctgattctatcccataatggcttgatgatgt |
31386703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 36861042 - 36860876
Alignment:
| Q |
2 |
cctttgatataatgtatagccagatctctacatatatttggaagatcatatccttctaagttattgatctcagcatgcagagaatgcacactgcaataac |
101 |
Q |
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||||||||||| |||| |||||| ||| |||| || || |||| || |||| |||| || ||||||| || ||||||||||||||| | ||||||||| |
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| T |
36861042 |
cctttgatatattgtaaagccaggtctttacaaatgttaggaacattatattcttccaaattattgagcttagcatgcagagaatgaattttgcaataac |
36860943 |
T |
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| Q |
102 |
tgtagtaatcatttatgttcagaagttcaataactccagtacttttactttgacatgattgcagcat |
168 |
Q |
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| T |
36860942 |
tatagtcatcattaatattcctaagctcaataactccaccattgctattttgacatgattgtagcat |
36860876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 35028762 - 35029032
Alignment:
| Q |
2 |
cctttgatataatgtatagccagatctctacatatatttggaagatcatatccttctaagttattgatctcagcatgcagagaatgcacactgcaataac |
101 |
Q |
| |
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||||||||||| |||| |||||| || |||| || || |||| || || | |||| || ||||||| || ||||||||||||||| | ||||||||| |
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| T |
35028762 |
cctttgatatattgtaaagccaggtccttacaaatgttaggaacattatgttcttccaaattattgagcttagcatgcagagaatgaattttgcaataac |
35028861 |
T |
|
| Q |
102 |
tgtagtaatcatttatgttcagaagttcaataactccagtacttttactttgacatgattgcagcataatcgtcaacgaaaccagcaaagtaatcaataa |
201 |
Q |
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| |||| || |||||| ||| ||| ||||||| |||| | | || ||||||||||||| ||||| || | || ||||| |||| ||| | ||||| |
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| T |
35028862 |
tatagtcattatttatattcctaagctcaataattccaccattgctattttgacatgattgtagcatcattgccattgaaactagcagagtgactaataa |
35028961 |
T |
|
| Q |
202 |
aactccaagagtgacaagtgaagcaaaaaatattgttgctgtaagagatgtcatgtagaatcctgattcta |
272 |
Q |
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|| |||||||| | ||| | ||||| || |||||||| | || ||||| |||||||| |||||||||| |
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| T |
35028962 |
aagtccaagagcggcaaatccagcaatgaagattgttgcagaaaatgatgtgatgtagaaacctgattcta |
35029032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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