View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_high_16 (Length: 303)
Name: NF21462_high_16
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 10393237 - 10393494
Alignment:
| Q |
18 |
gaaaagaagaccaagctgaagaggttgtagaagaatagtgtatagcggagaaaacgtataaggaagaaacaacgatgccaacgatgacaacagtgtagat |
117 |
Q |
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| T |
10393237 |
gaaaagaagaccaagctgaagaggttgtagaagaatagtgtatagcggagaaaacgtataaggaagaaacaac---------gatgacaacagtgtagat |
10393327 |
T |
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| Q |
118 |
cgtgagaaagacaggtcttgaatgtgcaacttcctcgcatgccatctgaaaattttctgattctgattcaaatagaaaccatgattgattttcactgcac |
217 |
Q |
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| T |
10393328 |
cgtgagaaagacaggtcttgaatgtgcaacttcctcgcatgccatctgaaaattttctgattctgattcaaatagaaaccatgattgattttcactgcac |
10393427 |
T |
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| Q |
218 |
aatgaagagagctgtgcttgtgcttgttattatggaaattcaaccactaaattattgatgtatattt |
284 |
Q |
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| T |
10393428 |
aatgaagagagctgtgcttgtgcttgttattatggaaattcaaccactaaattattgatgtatattt |
10393494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 30844109 - 30844252
Alignment:
| Q |
18 |
gaaaagaagaccaagctgaagaggttgtagaagaatagtgtata--gcggagaaaacgtataaggaagaaacaacgatgccaacgatgacaacagtgtag |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| | | || ||||||||| | ||| |
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| T |
30844109 |
gaaaagaggaccaagctgaagaggttgtagaagaatagtgtataaggcagagaagacgtataaggaagata---------ctactatgacaacaatctag |
30844199 |
T |
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| Q |
116 |
atcgtgagaaagacaggtcttgaatgtgcaacttcctcgcatgccatctgaaa |
168 |
Q |
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| T |
30844200 |
atcgtgaggaagagaggtcttgaatgtgcaacttcttcacacgtcatctgaaa |
30844252 |
T |
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