View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21462_high_2 (Length: 520)

Name: NF21462_high_2
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21462_high_2
NF21462_high_2
[»] chr3 (2 HSPs)
chr3 (1-520)||(28789926-28790439)
chr3 (334-397)||(28780707-28780770)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 28790439 - 28789926
Alignment:
Q  1 ctaagcaaatgattttgcatttgttataatatgcggttgtaccaatgcttgtcagcttgaatctacaaacaatcatggtgaactcttattgcagccttac 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||   ||||||| || ||||||||     
T  28790439 ctaagcaaatgattttgcatttgttataatatgcggttgtgccaatgctcgtcagcttgaatctacaaatagtcatg---aactcttgtttcagccttat 28790343  T
Q  101 tgtcacttgcataatgcatatcaaatcatctacttagtttgcttattagttttagtttttagagtgttttcaaaagccatttcagtaaaattaatcaaaa 200  Q
     |||||||||||||||||||||||| | |  |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||| ||||    
T  28790342 agtcacttgcataatgcatatcaaaactttgacttagttcgcttattagttttagtttttggactggtttcaaaagccatttcagtaaaattaataaaaa 28790243  T
Q  201 cttgtttcggtgagaattgtttatggatgatcacannnnnnnncctgtttgatttcaaacatcattgatgcaagcacatcatgtgttagtatttatgtac 300  Q
    ||||||| |||||||||||||||||||||||||||         ||||||||||||||   ||| |||||||||||||||||| ||||||||||||||||    
T  28790242 cttgttttggtgagaattgtttatggatgatcacattttttt--ctgtttgatttcaactgtcagtgatgcaagcacatcatgagttagtatttatgtac 28790145  T
Q  301 tattgcctgaatattgtttctttagtcccatgcttttaatgttgtcgctgttcaatattgaaattgagttgtacaaaatatggattggtttacatttttt 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| |    
T  28790144 tattgcttgaatattgtttctttagtcccatgcttttaatgttgtcgttgttcaatattaaaattgagttgtacaaaatatcgattggtttacattttct 28790045  T
Q  401 aaaatatcatttaaggatgaccataatccttcatatcaaaaatattttcaagtctaggtatgtctttctcagttgcatgaatgcaacttatgtttatctg 500  Q
    ||||| ||| |||||||| ||| ||||| ||||||| | | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  28790044 aaaatgtca-ttaaggattaccgtaatctttcatattacagatattttaaagtctaggtatgtctttctcagttgcatgaatgcagcttatgtttatcag 28789946  T
Q  501 tttcatgattgagaggcttt 520  Q
    ||||||||||||||||||||    
T  28789945 tttcatgattgagaggcttt 28789926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 28780770 - 28780707
Alignment:
Q  334 ttttaatgttgtcgctgttcaatattgaaattgagttgtacaaaatatggattggtttacattt 397  Q
    ||||| ||||||| ||||||||||||||  ||||||| ||||||||||||| | |||| |||||    
T  28780770 ttttagtgttgtctctgttcaatattgatgttgagttctacaaaatatggacttgtttgcattt 28780707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University