View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_high_20 (Length: 278)
Name: NF21462_high_20
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 42242241 - 42241993
Alignment:
| Q |
14 |
aagaaaatggttacattgaaatcatattaattgaatctttgcgacaaacatgtggaattatttgaattttgcaagcaataaaaagtatggtccacggtgc |
113 |
Q |
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| T |
42242241 |
aagaaaatggttacattgaaatcatattaattgaatctttgcgacaaacatgtggaattatttgaattttgcaagcaataaaaagtatggaccacggtgc |
42242142 |
T |
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| Q |
114 |
tagattgaatggattgtggatgcctctggcgggagacctaannnnnnnnnnnnnnnnaaggagacctaattgaaaagacaaacacatgggtccaatgccc |
213 |
Q |
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| T |
42242141 |
tagattgaatggattgtggatgcctctggcgggagacctaatttatttttattttttaaggagacctaattgaaaagacaaacacatgggtccaatgccc |
42242042 |
T |
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| Q |
214 |
ctttattcctagtat--taccttcccacccaacataaatttggtatgca |
260 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42242041 |
ctttattcctagtatcctaccttcccacccaacataaatttggtatgca |
42241993 |
T |
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