View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_high_21 (Length: 278)
Name: NF21462_high_21
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 41746916 - 41747172
Alignment:
| Q |
1 |
tttggtgggactcctatgaattgtaactaataataagaaagaccgtggtaaagagtgtgtttctaacgttattctttattgggtagtttgcgcacactga |
100 |
Q |
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| T |
41746916 |
tttggtgggactcttatgaattgtaactaataataaaaaagaccgtggtaaagagtgtgtttctaacgttattctttattgggtagtttgcgcacactga |
41747015 |
T |
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| Q |
101 |
aatttcaggttttactaaaacaatacaatatttggtaagaattaaaggtttttatatatcttcaaatttgcggagagaagattgcaccctcttgtaaact |
200 |
Q |
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| T |
41747016 |
aatttcaggttttactaaaacaatacaatattcggtaagaattagaggtttt----tatcttcaattttgcggagagaagattgcaccctcttgtaaact |
41747111 |
T |
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| Q |
201 |
gcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttat |
261 |
Q |
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| T |
41747112 |
gcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggtttat |
41747172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 41757829 - 41757908
Alignment:
| Q |
172 |
ggagagaagattgcaccctcttgtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagc |
251 |
Q |
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| T |
41757829 |
ggagagaagattgcaacagtgtgtagacagcatgccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagc |
41757908 |
T |
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