View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_high_4 (Length: 489)
Name: NF21462_high_4
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 648377 - 648837
Alignment:
| Q |
18 |
tgatcaatttaaactcttttacgttgatggccaaagagattcagagttagggtgtcatgaattctgttaaatgttttaggtttttcaatttaatcaagct |
117 |
Q |
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| T |
648377 |
tgatcaatttaaactcttttacgttgatggccaaagagattcagagttagggtgtcatgaattctgttaaatgttttaggtttttcaatttaatcaagct |
648476 |
T |
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| Q |
118 |
tagtatctcaaaaaatatggatataaaggagagatttatattgattgtactgcttaaagatagtaatagacgatgcaatctaaacatgaaaacatgaaca |
217 |
Q |
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| T |
648477 |
tagtatctcaaaaaatatggatataaaggagagatttatattgattgtactgcttaaagatagtaatagacgatgcaatctaaacatgaaaacatgaaca |
648576 |
T |
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| Q |
218 |
ttttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttg |
317 |
Q |
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| T |
648577 |
ttttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttg |
648676 |
T |
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| Q |
318 |
ctctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactcacactttcagtgactttcaatctaattgcacc |
417 |
Q |
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| T |
648677 |
ttctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactcacactttcagtgactttcaatctaattgcacc |
648776 |
T |
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| Q |
418 |
atgccttttatgatttgtctgtttgcatattccactggcttctcttgattctggacttctt |
478 |
Q |
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| T |
648777 |
atgccttttatgatttgtctgtttgcatattccactggcttctcttgattctggacttctt |
648837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 194 - 475
Target Start/End: Original strand, 685955 - 686231
Alignment:
| Q |
194 |
aatctaaacatgaaaacatgaacattttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacaccca |
293 |
Q |
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| T |
685955 |
aatccaaacataaaaacatgaacattttctcaa--ccaaaaacaagtcctaaaatttcagttatgctaaaacataatagaacttttataaattacaccca |
686052 |
T |
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| Q |
294 |
gtatttaaacattgctagcttttgctctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactcacactttc |
393 |
Q |
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| T |
686053 |
gttttcaaacattgctagctttttttcttaataaatgaatatttgt-ttgaacaga-tagacttttaaattttaaaatatt-aatcacactcacactttc |
686149 |
T |
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| Q |
394 |
agtgactttcaatctaattgcaccatgccttttatgatttgtctgtttgcatattccactggcttctcttgattctggactt |
475 |
Q |
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| T |
686150 |
agtgactttcaatctagttgtatcataccttttatggtttatctgtttgcatattcaactgccgtctcttgattatggactt |
686231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 685620 - 685706
Alignment:
| Q |
110 |
atcaagcttagtatctcaaaaaatatggatataaag-gagagatttatattgattgtactgcttaaagatagtaatagacgatgcaat |
196 |
Q |
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| T |
685620 |
atcaagcttcgtatctcaaaaaatatggatacaaagagagagattga-aataattgtactgatcatagatagcaataggcgatgcaat |
685706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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