View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21462_high_6 (Length: 441)
Name: NF21462_high_6
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 38157251 - 38156828
Alignment:
| Q |
1 |
acgatcctctttgaaggggtcagggaagaaaaagaagaaactttacgaaaactgttatttccacaattcatattagtacgtactattattattcaagcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
38157251 |
acgatcctctttgaaggggtcagggaagaaaaagaagaaactttacgaaaactgttatttccacaattcatattaggac-tattattattattcaagcca |
38157153 |
T |
|
| Q |
101 |
ttgaatattaagtcttttatccacgcatgcctatttttacgtcctgtcataaaaacaatagtattgtcaatcacaaattgtagaaaataataggttgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38157152 |
ttgaatattaagtcttttatccacgcatgcctatttttacgtcctgtcataaaaacaatagtattgtcaatcacaaattgtagaaaataataggttgtta |
38157053 |
T |
|
| Q |
201 |
gaattccgctatgctatagtactatagtgcaactatagttgctatcaaacaatactatgtactaatcagcgtattacaaagtacatttacgcgacaatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
38157052 |
gaattccgctatgctatagtactatagtgcaactatagttgctatcaaacaacactatgtactaatcagcgtattacaaaatacacttacgtgacaatat |
38156953 |
T |
|
| Q |
301 |
catgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcatttacattacatttatgttaaaatttctattcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38156952 |
catgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcatttacattacatgtatgttaaaatttctattcat |
38156853 |
T |
|
| Q |
401 |
aatgcaacattttaatcattctaac |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38156852 |
aatgcaacattttaatcattctaac |
38156828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 247 - 425
Target Start/End: Original strand, 38178221 - 38178399
Alignment:
| Q |
247 |
aaacaatactatgtactaatcagcgtattacaaagtacatttacgcgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgaca |
346 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || ||||||||||||||||| | |
|
|
| T |
38178221 |
aaacaacactatgtgctaatcagcgtattacaaagtacatttgcgtgacaatatcatgagttttcaatggatgttcgagtaaaactattttacaccgata |
38178320 |
T |
|
| Q |
347 |
atgcatcttcattaaactcatttacattacatttatgttaaaatttctattcataatgcaacattttaatcattctaac |
425 |
Q |
| |
|
| | ||||||| |||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
38178321 |
acggatcttcaataaactcatttacattacatgtatcttaaaattattattcataatgccacattttaatcattctaac |
38178399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 247 - 425
Target Start/End: Original strand, 38205445 - 38205623
Alignment:
| Q |
247 |
aaacaatactatgtactaatcagcgtattacaaagtacatttacgcgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgaca |
346 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || ||||||||||||||||| | |
|
|
| T |
38205445 |
aaacaacactatgtgctaatcagcgtattacaaagtacatttgcgtgacaatatcatgagttttcaatggatgttcgagtaaaactattttacaccgata |
38205544 |
T |
|
| Q |
347 |
atgcatcttcattaaactcatttacattacatttatgttaaaatttctattcataatgcaacattttaatcattctaac |
425 |
Q |
| |
|
| | ||||||| |||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
38205545 |
acggatcttcaataaactcatttacattacatgtatcttaaaattattattcataatgccacattttaatcattctaac |
38205623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 258 - 425
Target Start/End: Complemental strand, 38221329 - 38221157
Alignment:
| Q |
258 |
tgtactaatcagcgtattacaaagtacatttacgcgacaatatc-atgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttc |
356 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||| ||||||||| ||| |||||||||||||| ||||||| |||||| |
|
|
| T |
38221329 |
tgtactaatcaacgtattactaagtacatttacgtgacaatatatatgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttc |
38221230 |
T |
|
| Q |
357 |
attaaactcatttacatta----catttatgttaaaatttctattcataatgcaacattttaatcattctaac |
425 |
Q |
| |
|
||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38221229 |
attaagctcatttacattacatgcatgtatcttaaaatttctattcataatgcaacattttaatcattctaac |
38221157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 273 - 425
Target Start/End: Complemental strand, 38168022 - 38167870
Alignment:
| Q |
273 |
attacaaagtacatttacgcgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcatttaca |
372 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
38168022 |
attacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcattttcattaaactcatttaca |
38167923 |
T |
|
| Q |
373 |
ttacatttatgttaaaatttctattcataatgcaacattttaatcattctaac |
425 |
Q |
| |
|
|||||| || ||| ||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
38167922 |
ttacatgcatcttagaatttcttttcataatgccacattttaatcattctaac |
38167870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 273 - 425
Target Start/End: Original strand, 38199082 - 38199234
Alignment:
| Q |
273 |
attacaaagtacatttacgcgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcatttaca |
372 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
38199082 |
attacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcattttcattaaactcatttaca |
38199181 |
T |
|
| Q |
373 |
ttacatttatgttaaaatttctattcataatgcaacattttaatcattctaac |
425 |
Q |
| |
|
|||||| || ||| ||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
38199182 |
ttacatgcatcttagaatttcttttcataatgccacattttaatcattctaac |
38199234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 38171298 - 38171240
Alignment:
| Q |
162 |
tattgtcaatcacaaattgtagaaaataataggttgttagaattccgctatgctatagt |
220 |
Q |
| |
|
||||||||||| || |||| |||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
38171298 |
tattgtcaatcccagattgcagaagttaatagcttgttcgaattccgctatgctatagt |
38171240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 38221385 - 38221340
Alignment:
| Q |
180 |
gtagaaaataataggttgttagaattccgctatgctatagtactat |
225 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |||| |
|
|
| T |
38221385 |
gtagaaaataacaggttgttggaattccgctacgctatagtcctat |
38221340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 2995678 - 2995611
Alignment:
| Q |
293 |
gacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcatta |
360 |
Q |
| |
|
||||| |||||||||||| | | ||||||||||| |||||| |||||||||| ||||||||| ||||| |
|
|
| T |
2995678 |
gacaacatcatgagtttttattagatgttgatgtaaaactagtttacaccgataatgcatctccatta |
2995611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 43246213 - 43246161
Alignment:
| Q |
314 |
tggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactca |
366 |
Q |
| |
|
|||||| || ||| |||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
43246213 |
tggatgatgttgtaaaactagtttacaccgtcaatgcatcttcattaaactca |
43246161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 44804598 - 44804565
Alignment:
| Q |
328 |
aaactattttacaccgacaatgcatcttcattaa |
361 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
44804598 |
aaactattttacaccgtcaatgcatcttcattaa |
44804565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 15707556 - 15707617
Alignment:
| Q |
164 |
ttgtcaatcacaaattgtagaaaataataggttgttagaattccgctatgctatagtactat |
225 |
Q |
| |
|
|||||||||||| |||||| |||||| || ||||| ||||||||||||||||||| |||| |
|
|
| T |
15707556 |
ttgtcaatcacagattgtaaaaaatagcagtttgttcaaattccgctatgctatagtgctat |
15707617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 2239986 - 2240042
Alignment:
| Q |
295 |
caatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgca |
351 |
Q |
| |
|
||||||| |||||| ||| | ||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
2239986 |
caatatcttgagttctcattagatgtcgatgtaaaactagtttacaccgacaatgca |
2240042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University