View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_high_7 (Length: 385)
Name: NF21462_high_7
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 33454928 - 33454569
Alignment:
| Q |
14 |
acatattccttgatcaagttaaaattgtgaagatgcaatgtggaaacgttttatcttgttcttatttccatcaattaaaactttaattgcggtataaggt |
113 |
Q |
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| T |
33454928 |
acatattccttgatcaagtaaaaattgtgaagatgcaatgtggaaacgttttatcttgttcttatttccatcaattaaaactttaattgcggtataaggt |
33454829 |
T |
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| Q |
114 |
ggttctctggttatgcataacatgcattagcaatactgaaactaatccatcatactcaaaataaaatacattttggcaaagccaagttgcgtatagttgt |
213 |
Q |
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| T |
33454828 |
ggttctctggttatgcataacatgcattagcaatactgaaactaatccatcatactcaaaataaaatacattttggcaaagccaagttgcgtat-gttgt |
33454730 |
T |
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| Q |
214 |
actgatttatgatcattgtctgcggttcattgtgatattctctcttgacttttatgaagcactagcattagccatgaagtgatcattctgtaatttatct |
313 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
33454729 |
actgatttatgatcattgtcttcggttcattgtgatattctgtcttgacttttatgaagcactagcattaaccatgaagtgatcattctgtaatgtatct |
33454630 |
T |
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| Q |
314 |
agtttcaatattttggaggatatttcattctctactaggtgaacttccatcttttccctat |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33454629 |
agtttcaatattttggaggatatttcattctctactaggtgaacttccatcttttacctat |
33454569 |
T |
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