View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_high_8 (Length: 364)
Name: NF21462_high_8
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 51 - 347
Target Start/End: Original strand, 16010221 - 16010524
Alignment:
| Q |
51 |
atgtaatgttgaagctagtttcaatcggttaatcaataaaacaagttgtgtattatattcaagattccaatgggaaattt--------ttattttgattg |
142 |
Q |
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| T |
16010221 |
atgtaatgttgacactagtttaaatctgtcaaccaataaaacaagttgtgtattgtattcaagattccaatggaaaatttgtttatgattattttgattt |
16010320 |
T |
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| Q |
143 |
gaagactctgatgatgctcattcatgatggtgagacatttgcattgttgatgcctatgaaata-gatccaatgctagggattgcataatgtagtatttga |
241 |
Q |
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| T |
16010321 |
gaagactctgatgatgctcattcatgatggtgagacatttgcattgttgatgcctatgaaatagggtccaatggtagggattgcataatgtagtatttga |
16010420 |
T |
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| Q |
242 |
aagtgattnnnnnnnnttctagtcgattttgttcactcgcattttgcagggaatttgagtgtagtaatattatttctatcattaggagtttgttagagtc |
341 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
16010421 |
aagttatt-aaaaaaattctagtcgattttgttcactcgcattttgcagggaatttgagtgtagtaatattatttctatcattaggagcttg-tagagtc |
16010518 |
T |
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| Q |
342 |
taatta |
347 |
Q |
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|||||| |
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| T |
16010519 |
taatta |
16010524 |
T |
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