View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_high_9 (Length: 355)
Name: NF21462_high_9
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 53676148 - 53676481
Alignment:
| Q |
14 |
cacatataactacatttgaactaactcaaatcaaaactattaactttgataaccagattctagataaacaacaatgtaaagaccaattaggataaagcaa |
113 |
Q |
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| T |
53676148 |
cacatataactacatttgaactaactcaaatcaaaactattaactttgataaccagattctagataaacaacaatgtaaagaccaattaggataaagcaa |
53676247 |
T |
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| Q |
114 |
tacacacaaatgaaatgacccttttaattaccattctttcttcagggctgagactattccaggactgaccaatcattttggtaaactccctttctctgtt |
213 |
Q |
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| T |
53676248 |
tacacacaaatgaaatgacccttttaattaccattctttcttcagggctgagactattccaggactgaccaatcattttggtaaactccctttctctgtt |
53676347 |
T |
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| Q |
214 |
tgggtagagttctttgagcttgtaatgcttttcagcaaagaaaaagttatagccactcctatttggctttggatagttgggatcccactttctttttctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676348 |
tgggtagagttctttgagcttgtaatgcttttcagcaaagaaaaagttatagccactcctatttggctttggatagttgggatcccactttctttttctt |
53676447 |
T |
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| Q |
314 |
ctcttcctcctacccaagcgatgagtttgatgat |
347 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
53676448 |
ctcttcctcctacccaagcgatgagtttggtgat |
53676481 |
T |
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