View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21462_low_1 (Length: 1093)

Name: NF21462_low_1
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21462_low_1
NF21462_low_1
[»] chr4 (15 HSPs)
chr4 (147-1084)||(8898021-8898960)
chr4 (19-146)||(8899072-8899199)
chr4 (174-367)||(12634140-12634335)
chr4 (193-340)||(15154649-15154797)
chr4 (160-339)||(53000069-53000251)
chr4 (196-367)||(36614549-36614722)
chr4 (188-271)||(7169159-7169243)
chr4 (148-240)||(10286030-10286122)
chr4 (283-362)||(7180415-7180494)
chr4 (1034-1084)||(10632741-10632789)
chr4 (284-387)||(31371506-31371609)
chr4 (934-987)||(3240442-3240495)
chr4 (1034-1084)||(3240369-3240417)
chr4 (158-255)||(21277071-21277168)
chr4 (147-236)||(31371375-31371464)
[»] chr2 (9 HSPs)
chr2 (157-395)||(24184975-24185214)
chr2 (174-346)||(16918026-16918199)
chr2 (187-395)||(8172563-8172770)
chr2 (187-250)||(35406860-35406923)
chr2 (934-987)||(18426117-18426170)
chr2 (1026-1084)||(18426056-18426112)
chr2 (294-340)||(31603054-31603100)
chr2 (189-242)||(23482891-23482944)
chr2 (1034-1078)||(26656442-26656484)
[»] chr3 (14 HSPs)
chr3 (157-407)||(8890688-8890938)
chr3 (157-407)||(12881556-12881807)
chr3 (147-459)||(31139061-31139374)
chr3 (160-366)||(4285086-4285299)
chr3 (157-339)||(11271663-11271836)
chr3 (187-366)||(20487800-20487981)
chr3 (661-802)||(35387495-35387636)
chr3 (398-536)||(6014010-6014148)
chr3 (915-987)||(22934963-22935035)
chr3 (147-240)||(4847242-4847335)
chr3 (915-987)||(34153781-34153853)
chr3 (147-211)||(4853686-4853750)
chr3 (147-211)||(4875420-4875484)
chr3 (1034-1084)||(22934894-22934942)
[»] scaffold0003 (1 HSPs)
scaffold0003 (412-536)||(356711-356835)
[»] chr1 (8 HSPs)
chr1 (157-340)||(45962927-45963111)
chr1 (328-489)||(12788808-12788970)
chr1 (156-403)||(28553572-28553821)
chr1 (892-987)||(17874694-17874789)
chr1 (169-253)||(12789051-12789135)
chr1 (164-250)||(17734719-17734805)
chr1 (934-987)||(572320-572373)
chr1 (218-270)||(37627696-37627748)
[»] chr7 (5 HSPs)
chr7 (160-536)||(10234718-10235097)
chr7 (369-521)||(23394935-23395087)
chr7 (148-366)||(9046420-9046642)
chr7 (165-255)||(35103694-35103784)
chr7 (311-364)||(11281615-11281668)
[»] chr5 (8 HSPs)
chr5 (157-405)||(26266636-26266884)
chr5 (362-514)||(24887060-24887212)
chr5 (161-253)||(1589666-1589758)
chr5 (689-825)||(20056447-20056585)
chr5 (920-987)||(19519106-19519173)
chr5 (161-253)||(24887335-24887427)
chr5 (294-367)||(26069485-26069559)
chr5 (934-987)||(38269505-38269558)
[»] chr8 (12 HSPs)
chr8 (157-414)||(33168003-33168261)
chr8 (352-457)||(45503760-45503867)
chr8 (369-530)||(27933243-27933401)
chr8 (934-987)||(32342773-32342826)
chr8 (934-987)||(32355260-32355313)
chr8 (934-987)||(32359378-32359431)
chr8 (934-987)||(32371914-32371967)
chr8 (284-414)||(17337036-17337165)
chr8 (86-148)||(27933685-27933746)
chr8 (160-201)||(12521649-12521690)
chr8 (294-395)||(13539582-13539683)
chr8 (294-395)||(13684791-13684892)
[»] chr6 (1 HSPs)
chr6 (155-366)||(31817471-31817684)
[»] scaffold0007 (1 HSPs)
scaffold0007 (161-272)||(215426-215537)
[»] scaffold1485 (1 HSPs)
scaffold1485 (147-211)||(1247-1311)


Alignment Details
Target: chr4 (Bit Score: 657; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 147 - 1084
Target Start/End: Complemental strand, 8898960 - 8898021
Alignment:
Q  147 ggacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatc 246  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |    
T  8898960 ggacaatatattctttggtatttcatatttcctctcccaatacatgaatgtatctcaacaataatcaacactattctcttggtcgattatcattgagacc 8898861  T
Q  247 ctttgagtgtaactttattgtcccaagactcttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcg 346  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  8898860 ctttgagtgcaactttattgtcccaagactcttaatctattctaatattttgtttatcttgtctaatctcatttaatccaatatcaaacttcacctctcg 8898761  T
Q  347 cttattcgtttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggttcatcgtttagtattagacatcaaatttaaagacaat-gaa 445  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||  ||    
T  8898760 cttattcgtttgatatttgaggtttgatttaatattaatattaaacttcacctttcggttcatcgtttaatattagacatcaaatttaaagacaataaaa 8898661  T
Q  446 aatatattagaaaacaattgcatataaaatggagtctagacttgagtttgtataaggatcaactcattagattatttccacaatctcaagagaaggaata 545  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  8898660 aatatattagaaaacaattgcatataaaatggagtctagacttaagtttgtatatggatcaactcattagattatttccacaatctcaagagcaggaata 8898561  T
Q  546 gtaaaaggcataataaacaactggaaatgtaaagagtacgaatataaagaacaaaaatgtaaagaacgagaaatataaagtgcnnnnnnntaagaactaa 645  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||| |||    
T  8898560 ataaaaggcataataaacaactggaaatgtaaagagtaggaatataaagaacaaaaatgtaaagaacgagaaatataaagtgcagaaaaataagaattaa 8898461  T
Q  646 aatatgaagttcttaatgaatcggtggtagtatttgagacgaacatcgatgcaacaattgagacacaaagaagtgagaaggagagaaagagttttattga 745  Q
    ||| |||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  8898460 aatctgaagttcttaatgaatcggtggtagtaattgagacaagcatcgatgcaataattgagacacagagaagtgagaaggagagaaagagttttattga 8898361  T
Q  746 cccacaccctccaccagagctaccagatcgaccttcatcacaatcaccaccgccaga--cacaaatcgtatgacttatgtgcacggtgtctaccggtgca 843  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||  |||||||||||||||||||| |||||||||||||| |||||    
T  8898360 tccacaccctccaccagagctaccagatcggccttcatcacaatcaccaccatcagagtcacaaatcgtatgacttatgcgcacggtgtctaccagtgca 8898261  T
Q  844 cattctttaagttgataatattttaattttttgcaaaggtaccagcattggcggagacactgcccgtcgatcccgggcactcgtctaggttcaatcaata 943  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||| |||||||||||| ||||| | | ||| |||||||||||||||||||||||||    
T  8898260 cattctttaagttggtaatattttaactttttgaataggtaccagcagtggcggagacaccgcccggcaaccccaggcactcgtctaggttcaatcaata 8898161  T
Q  944 ctttctttatactaggtctaacccaatagttcattaacccacttnnnnnnnnnttgggcaaactcaaatatannnnnnngacaaaagggaaaactcaaat 1043  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||         |||||||||||||||||||       |||| ||||||||||||||||    
T  8898160 ctttctttacactaggtctaactcaatagttcattatcccacttaaaaaaattttgggcaaactcaaatatattttcttgacagaagggaaaactcaaat 8898061  T
Q  1044 attttgcacacgcgcacaaccaaaaagtcacttgatgatgt 1084  Q
    ||||||| ||||||||||| |||||||||||| ||||||||    
T  8898060 attttgctcacgcgcacaa-caaaaagtcactggatgatgt 8898021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 8899199 - 8899072
Alignment:
Q  19 gtaagtgcacgattctattgagtagtaaaaggagtatcgatccatatgaggttttatgtgattacagatctaattcttagtttcgattagctaaaaaagg 118  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||| ||| |||||||||||||| | ||||||||| ||||| ||||||||||||||||    
T  8899199 gtaagtgcatgattctattgagtagtaaaaagagtatcgattcataggagattttatgtgattaccggtctaattctcagttttgattagctaaaaaagg 8899100  T
Q  119 aataagtttttaagagcaatgtttgttt 146  Q
    ||||||||||||||||||||||||||||    
T  8899099 aataagtttttaagagcaatgtttgttt 8899072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 174 - 367
Target Start/End: Original strand, 12634140 - 12634335
Alignment:
Q  174 tttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtg-taactttattgtcccaa 272  Q
    |||||| ||| | |||||||||||||||||| |||||||||  |||||||| ||||||||||| ||||||| ||||| ||||  ||| |||||||| |||    
T  12634140 tttcctttcagaatacatgaatgtatctcaataataatcaaacctattctcatggttgattattattgagaccctttaagtgcaaaccttattgtctcaa 12634239  T
Q  273 gactc-ttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatatttgag 367  Q
     |||| | ||  || ||| || ||||||||||||||| |||||||||||  || | ||||||||||||| | ||| | |||| |||||||||||||    
T  12634240 aactcataaaattactctcatgttttgtttatcttgtctaatctcatttgttctaatatcaaacttcacatttcggtcattcatttgatatttgag 12634335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 193 - 340
Target Start/End: Complemental strand, 15154797 - 15154649
Alignment:
Q  193 aatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgtaactttattgtcccaagactcttaat-ctattctaa 291  Q
    |||| |||| || |||||||| || ||||||| |||||||||| |||||||| ||||| |||||| | ||||  ||| |||||||  ||  ||||||| |    
T  15154797 aatgcatctaaataataatcatgattattctcatggttgattaccattgagaccctttaagtgtagccttataatcctaagactcacaaaactattctca 15154698  T
Q  292 tattttgtttatcttgtataatctcatttaatccagtatcaaacttcac 340  Q
    | ||||||||||||||| |||||||||||  |||| |||||||||||||    
T  15154697 tgttttgtttatcttgtctaatctcatttgctccaatatcaaacttcac 15154649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 160 - 339
Target Start/End: Original strand, 53000069 - 53000251
Alignment:
Q  160 tttggtatttcatatttcctctcacactacatgaatgtatctc--aacaataatcaagactattctcttggttgattatcattgagatcctttgagtgta 257  Q
    ||||||||||||| |||||||||  | || |||||||||||||  ||||||||| ||   |||| || ||||| || |||||||| | |||||||||| |    
T  53000069 tttggtatttcatgtttcctctctaaataaatgaatgtatctcaaaacaataattaaacatattatcatggtttatcatcattgataccctttgagtgca 53000168  T
Q  258 actttattgtcccaagactct-taatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttca 339  Q
    || |||||||||||| |||||  || ||||||  || ||||| ||||||||| ||| ||||||| || || ||||||||||||    
T  53000169 accttattgtcccaaaactctcaaaactattcacatgttttgattatcttgtctaacctcatttgatacaatatcaaacttca 53000251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 196 - 367
Target Start/End: Original strand, 36614549 - 36614722
Alignment:
Q  196 gtatctcaacaataatcaagactattctcttggttgattatcattgagatcc-tttgagtgtaactttattgtcccaagactc-ttaatctattctaata 293  Q
    ||||||||| ||||||||||  ||||||| |||||||||||||||||||||| ||| ||||   | ||||| ||||| || ||   || ||||||| ||     
T  36614549 gtatctcaataataatcaagtatattctcatggttgattatcattgagatccttttaagtgcgtccttattatcccatgattcacaaaactattctcatg 36614648  T
Q  294 ttttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatatttgag 367  Q
    ||||||||||||||| ||||||||||||||| |  || ||||||||| | ||| |  ||| |||||||||||||    
T  36614649 ttttgtttatcttgtctaatctcatttaatctaaaattaaacttcacctttcgatccttcatttgatatttgag 36614722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 7169243 - 7169159
Alignment:
Q  188 acatgaatgtatctcaa-caataatcaagactattctcttggttgattatcattgagatcctttgagtgtaactttattgtccca 271  Q
    ||||||||||||||||| ||||||||||   ||||||| || |||||||||||||||| |||||||||| ||| ||||| |||||    
T  7169243 acatgaatgtatctcaaacaataatcaaacttattctcatgattgattatcattgagaccctttgagtgcaaccttattatccca 7169159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 10286030 - 10286122
Alignment:
Q  148 gacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcatt 240  Q
    ||||||||||||||| ||||||||| | |||| ||| |   ||||| |||||||||| |||||||||| ||||| || |||||||||||||||    
T  10286030 gacaatatattctttagtatttcatgtgtcctttcaaaaatcatgagtgtatctcaataataatcaagcctattttcatggttgattatcatt 10286122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 7180494 - 7180415
Alignment:
Q  283 ctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatat 362  Q
    ||||||| |||||||| ||||| ||| ||||||||||| ||| | ||||||||||||| ||| |||| ||| ||||||||    
T  7180494 ctattctcatattttgattatcctgtctaatctcatttgatctaatatcaaacttcacctcttgcttcttcatttgatat 7180415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1034 - 1084
Target Start/End: Complemental strand, 10632789 - 10632741
Alignment:
Q  1034 aaactcaaatattttgcacacgcgcacaaccaaaaagtcacttgatgatgt 1084  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  10632789 aaactcaaatatttttcacacgcgcacaac--aaaagtcacttgatgatgt 10632741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 387
Target Start/End: Original strand, 31371506 - 31371609
Alignment:
Q  284 tattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatatttgaggtttgatttaatatca 383  Q
    |||||| || ||||||||||||||| | ||||||||| ||||| ||||||| || || ||||| |  || |||||||||||||| | ||||| |||| ||    
T  31371506 tattctcatgttttgtttatcttgtctgatctcattttatccaatatcaaattttacatctcggtcctttgtttgatatttgagatatgattaaataaca 31371605  T
Q  384 atat 387  Q
    ||||    
T  31371606 atat 31371609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 934 - 987
Target Start/End: Complemental strand, 3240495 - 3240442
Alignment:
Q  934 tcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||| ||| ||||||||||||||||| ||||||||||  |||||||||||||    
T  3240495 tcaatcgatattttctttatactaggtccaacccaatagcccattaacccactt 3240442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1034 - 1084
Target Start/End: Complemental strand, 3240417 - 3240369
Alignment:
Q  1034 aaactcaaatattttgcacacgcgcacaaccaaaaagtcacttgatgatgt 1084  Q
    ||||||||||||||| ||||||||||||||  |||||| ||||||||||||    
T  3240417 aaactcaaatatttttcacacgcgcacaac--aaaagttacttgatgatgt 3240369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 21277168 - 21277071
Alignment:
Q  158 tctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtg 255  Q
    |||| ||||||| || |||||| ||| | ||||| |||||||||||| ||  |||||| ||||| |  ||||||||||| ||||||| ||||| ||||    
T  21277168 tcttaggtattttatgtttcctttcagaatacataaatgtatctcaataacgatcaagcctatttttatggttgattattattgagaccctttaagtg 21277071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 31371375 - 31371464
Alignment:
Q  147 ggacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattat 236  Q
    ||||||| | ||||| |||||||||||||| |||||  | ||||||||| |||||||| | |||||||   ||||||  |||||||||||    
T  31371375 ggacaatgtgttcttaggtatttcatattttctctctaaatacatgaatctatctcaatagtaatcaaacttattcttatggttgattat 31371464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 5e-56; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 157 - 395
Target Start/End: Original strand, 24184975 - 24185214
Alignment:
Q  157 ttctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgt 256  Q
    |||||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||     
T  24184975 ttctttggtatttcatatttccactcagaatacatgaatatatctcaacaataatcaagcctattctcatggttgattatcattgagaccctttgagtgc 24185074  T
Q  257 aactttattgtcccaagactc-ttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgt 355  Q
    ||| |||||||||||||||||   || |||||||  | ||||||||||||||| ||||||||||| ||||| ||||||| || || |||   || |||||    
T  24185075 aaccttattgtcccaagactcggaaaactattctcgtgttttgtttatcttgtctaatctcatttgatccaatatcaaatttgacctctttgttcttcgt 24185174  T
Q  356 ttgatatttgaggtttgatttaatatcaatattaaacttc 395  Q
    |||||||||||| | ||||| |||| |||||| |||||||    
T  24185175 ttgatatttgagatatgattaaataacaatatcaaacttc 24185214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 174 - 346
Target Start/End: Complemental strand, 16918199 - 16918026
Alignment:
Q  174 tttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgtaactttattgtcccaag 273  Q
    |||||| ||| | ||||| |||||||||||| |||||||||   ||||||| |||||| ||||||||||||||| || | || ||| ||||| ||| |||    
T  16918199 tttcctttcaaaatacataaatgtatctcaataataatcaaacatattctcatggttggttatcattgagatcccttaaatgcaaccttattatcctaag 16918100  T
Q  274 actc-ttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcg 346  Q
    |||| | || ||||||| || ||||||||||||| | |||| |||||| ||||| ||||||| ||||| |||||    
T  16918099 actcgtaaaactattctcatgttttgtttatcttttctaatatcatttgatccaatatcaaaattcacatctcg 16918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 187 - 395
Target Start/End: Original strand, 8172563 - 8172770
Alignment:
Q  187 tacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgtaactttattgtcccaagactcttaatct-a 285  Q
    ||||||||||||||||||||||||| || | ||||||| || |||||| |||||||||||||||   || ||| ||||||| ||| ||||| |||  | |    
T  8172563 tacatgaatgtatctcaacaataataaaca-tattctcatgattgattctcattgagatccttttgatgcaaccttattgttccacgactcataaaatta 8172661  T
Q  286 ttctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatatttgaggtttgatttaatatcaat 385  Q
    ||||  | ||| |||| |||||| |||| |||||| || || ||||||||||||| ||| | || |||||||||||||| || | ||||| |||| ||||    
T  8172662 ttcttgtgttt-gtttgtcttgtctaatttcatttgattcaatatcaaacttcacatcttgattcttcgtttgatatttaagatatgattaaataacaat 8172760  T
Q  386 attaaacttc 395  Q
    || |||||||    
T  8172761 atcaaacttc 8172770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 35406923 - 35406860
Alignment:
Q  187 tacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatccttt 250  Q
    ||||||||||||||||||  |||||||||  ||||||| ||||||||||||||| ||| |||||    
T  35406923 tacatgaatgtatctcaatgataatcaagcatattctcatggttgattatcattaagacccttt 35406860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 934 - 987
Target Start/End: Complemental strand, 18426170 - 18426117
Alignment:
Q  934 tcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||| ||||||||||||||||||||| |||| ||||||  ||||||||||||    
T  18426170 tcaatcgatactttctttatactaggtccaaccaaatagtctattaacccactt 18426117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1026 - 1084
Target Start/End: Complemental strand, 18426112 - 18426056
Alignment:
Q  1026 aaaagggaaaactcaaatattttgcacacgcgcacaaccaaaaagtcacttgatgatgt 1084  Q
    ||||||| ||||||||||||||| |||||| |||||||  |||||||||||||| ||||    
T  18426112 aaaagggcaaactcaaatatttttcacacgtgcacaac--aaaagtcacttgataatgt 18426056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 31603054 - 31603100
Alignment:
Q  294 ttttgtttatcttgtataatctcatttaatccagtatcaaacttcac 340  Q
    ||||| ||||||||| ||||||||||| ||||| |||||||||||||    
T  31603054 ttttgattatcttgtctaatctcatttgatccaatatcaaacttcac 31603100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 23482944 - 23482891
Alignment:
Q  189 catgaatgtatctcaacaataatcaagactattctcttggttgattatcattga 242  Q
    |||||||||||||||| |||||||||   ||||||| ||||||||||| |||||    
T  23482944 catgaatgtatctcaataataatcaaacatattctcatggttgattattattga 23482891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1034 - 1078
Target Start/End: Complemental strand, 26656484 - 26656442
Alignment:
Q  1034 aaactcaaatattttgcacacgcgcacaaccaaaaagtcacttga 1078  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||    
T  26656484 aaactcaaatatttttcacacgcgcacaac--aaaagtcacttga 26656442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 4e-44; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 157 - 407
Target Start/End: Complemental strand, 8890938 - 8890688
Alignment:
Q  157 ttctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgt 256  Q
    |||||||||| ||||| |||||||||| | | ||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||  ||||||||||     
T  8890938 ttctttggtaattcatgtttcctctcataattcatgaatgtatctcaacaataactaagcctattctcatggttgattatcattgagtccctttgagtgc 8890839  T
Q  257 aactttattgtcccaagactctta-atctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgt 355  Q
    ||| ||||||||| || |||| || | ||||| | || ||||| ||||||||| |||||| ||||  |||| ||||||||||||||||||| || |||||    
T  8890838 aaccttattgtccaaaaactcatacaactattatcatgttttg-ttatcttgtctaatctaatttgttccaatatcaaacttcacttctcggttcttcgt 8890740  T
Q  356 ttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggttc 407  Q
    |||||||||||| | ||| |  ||| |||||| ||||||| ||| |||||||    
T  8890739 ttgatatttgagatatgagtatataacaatatcaaacttcacctctcggttc 8890688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 157 - 407
Target Start/End: Complemental strand, 12881807 - 12881556
Alignment:
Q  157 ttctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgt 256  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||| ||||| ||||  |||||| |||||| ||||||||| ||| ||||||||||     
T  12881807 ttctttggtatttcatgtttcctctcaaaatacatgaatgtatctcaataataaccaagcttattcttttggttaattatcattaagaccctttgagtgc 12881708  T
Q  257 aactttattgtcccaagactctta-atctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgt 355  Q
    ||  ||||||||| |||||||  | | ||||||| || ||||||||||||||  ||| || | || ||||| ||||||||||||| ||||| || |||||    
T  12881707 aatcttattgtcctaagactcacataactattctcatgttttgtttatcttgcctaaactaagttgatccaatatcaaacttcacctctcggttcttcgt 12881608  T
Q  356 ttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggttc 407  Q
    |||||||||||| | ||||| |||| |||||| ||| ||| ||| |||||||    
T  12881607 ttgatatttgagatatgattaaataacaatataaaatttcacctctcggttc 12881556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 147 - 459
Target Start/End: Original strand, 31139061 - 31139374
Alignment:
Q  147 ggacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatc 246  Q
    |||||| || ||||||||||||| || ||| || ||| | ||||| || ||||||||| ||||||||||  ||||||| | |||||||| |||||||| |    
T  31139061 ggacaaaatgttctttggtattttatgttttctttcataatacataaacgtatctcaataataatcaagcttattctcatagttgattaccattgagacc 31139160  T
Q  247 ctttgagtgtaactttattgtcccaagactcttaatcta-ttctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctc 345  Q
    |||| |||| | | ||||| |||||||||||  ||  |  |||| |||||||||||||||| | ||||||||||| ||||| ||||||||||||| ||||    
T  31139161 ctttaagtgcagccttattatcccaagactcacaaaattgttctcatattttgtttatcttatctaatctcatttgatccaatatcaaacttcacctctc 31139260  T
Q  346 gcttattcgtttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggttcatcgtttagtattagacatcaaatttaaagacaatgaa 445  Q
    | || |||||||||||| |||| | ||||| |||| |||||| ||| ||| | | ||| ||| ||||||  |||| |  || | ||||||  ||||||||    
T  31139261 ggttcttcgtttgatatatgagatatgattaaataacaatatcaaagttcacatctcgattcttcgtttgatatttgttataatatttaacaacaatgaa 31139360  T
Q  446 aatatattagaaaa 459  Q
    | ||||||||||||    
T  31139361 attatattagaaaa 31139374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 160 - 366
Target Start/End: Complemental strand, 4285299 - 4285086
Alignment:
Q  160 tttggtatttcatatttcctctcacactacatgaatgtatctcaaca------ataatcaagactattctcttggttgattatcattgagatcctttgag 253  Q
    |||| |||||||| |||||||||  | |||||||||||||||||| |      |||| |||  |||||||| ||||||||||||||||||||| |||  |    
T  4285299 tttgatatttcatgtttcctctcgaaatacatgaatgtatctcaaaacaatatataagcaaatctattctcatggttgattatcattgagatcttttagg 4285200  T
Q  254 tgtaactttattgtcccaagactct-taatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttatt 352  Q
    |||||| ||||||| ||||||||||  ||  |||||| || |||||  || ||| | ||||||||||| ||||  |||||||||| || ||||| |  ||    
T  4285199 tgtaaccttattgttccaagactctaaaaattattctgatgttttgaataccttatttaatctcatttgatcctatatcaaactttacatctcggtactt 4285100  T
Q  353 cgtttgatatttga 366  Q
    ||||||||||||||    
T  4285099 cgtttgatatttga 4285086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 157 - 339
Target Start/End: Complemental strand, 11271836 - 11271663
Alignment:
Q  157 ttctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgt 256  Q
    ||||||||||||| || |||||| | | | || || |||||||||||| ||||||||||  ||||||| |||||||||||||||||||           |    
T  11271836 ttctttggtattttatgtttccttttagaatatataaatgtatctcaataataatcaagcttattctcatggttgattatcattgagac----------t 11271747  T
Q  257 aactttattgtcccaagactcttaatct-attctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttca 339  Q
    ||| ||||| |||||||||||  ||  | ||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  11271746 aaccttattatcccaagactcacaaaattattctcatattttgtttatcttgtctaatctcatttgatccaatatcaaacttca 11271663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 187 - 366
Target Start/End: Original strand, 20487800 - 20487981
Alignment:
Q  187 tacatgaatgtatctc--aacaataatcaagactattctcttggttgattatcattgagatcctttgagtgtaactttattgtcccaagactcttaatct 284  Q
    ||||||||||| ||||  ||||||  ||||| ||||||||  ||| ||| ||||   ||||||||||||| |||| |||||||||||||||||| ||  |    
T  20487800 tacatgaatgtgtctcgaaacaatggtcaagcctattctcacggtcgatcatcacatagatcctttgagtataaccttattgtcccaagactctcaaaat 20487899  T
Q  285 attctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatatttga 366  Q
    ||| | || ||||| ||  ||||| ||| ||||||| ||||| ||||||||||||| ||||| |  || |||||||||||||    
T  20487900 attttcatgttttgattgacttgtgtaacctcatttgatccaatatcaaacttcacctctcggtactttgtttgatatttga 20487981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 661 - 802
Target Start/End: Original strand, 35387495 - 35387636
Alignment:
Q  661 atgaatcggtggtagtatttgagacgaacatcgatgcaacaattgagacacaaagaagtgagaaggagagaaagagttttattgacccacaccctccacc 760  Q
    |||||||||||||||| ||| |||| | |||||||||| ||| | ||||||||| | ||||||||||||||| || | ||   || |  |||||||||||    
T  35387495 atgaatcggtggtagtgttttagacaatcatcgatgcagcaactaagacacaaatatgtgagaaggagagaaggattgttcccgatctgcaccctccacc 35387594  T
Q  761 agagctaccagatcgaccttcatcacaatcaccaccgccaga 802  Q
     |||  ||||||||  |||||||||||||||||||| |||||    
T  35387595 ggagacaccagatccgccttcatcacaatcaccaccaccaga 35387636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 398 - 536
Target Start/End: Complemental strand, 6014148 - 6014010
Alignment:
Q  398 ctttcggttcatcgtttagtattagacatcaaatttaaagacaatgaaaatatattagaaaacaattgcatataaaatggagtctagacttgagtttgta 497  Q
    |||| ||||| || |||| ||||||| || ||||||||| ||||||| |||| ||||| |||||||| |||| ||||| ||||||||||||| |||| ||    
T  6014148 ctttaggttcttcatttaatattagatattaaatttaaaaacaatgagaatagattagcaaacaatttcatagaaaatagagtctagacttgggtttata 6014049  T
Q  498 taaggatcaactcattagattatttccacaatctcaaga 536  Q
     | |||| || | ||| ||||||  |||||||| |||||    
T  6014048 catggattaaattatttgattatccccacaatcccaaga 6014010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 915 - 987
Target Start/End: Complemental strand, 22935035 - 22934963
Alignment:
Q  915 cccgggcactcgtctaggttcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    ||||||||||||||  || |||||| ||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  22935035 cccgggcactcgtccgggctcaatcgatactttctttatactaggtccaacctaatagctcattaacacactt 22934963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 4847335 - 4847242
Alignment:
Q  147 ggacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcatt 240  Q
    |||||| || ||||||| |||||||| |||||| ||| | |||||||||||||||||||| |||| ||  |||||||| | |||||| ||||||    
T  4847335 ggacaagatgttctttgatatttcatgtttcctatcagattacatgaatgtatctcaacagtaattaaacctattctcatagttgataatcatt 4847242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 915 - 987
Target Start/End: Complemental strand, 34153853 - 34153781
Alignment:
Q  915 cccgggcactcgtctaggttcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    ||||||||||||||  || |||||| ||| |||||||| |||||| | |||||||||||| ||||||||||||    
T  34153853 cccgggcactcgtccgggctcaatcgatattttctttacactaggcccaacccaatagttaattaacccactt 34153781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 4853750 - 4853686
Alignment:
Q  147 ggacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataat 211  Q
    |||||| || |||||||||||||||| |||||| | | | |||||||||||||||||||| ||||    
T  4853750 ggacaagatgttctttggtatttcatgtttcctataagattacatgaatgtatctcaacagtaat 4853686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 4875484 - 4875420
Alignment:
Q  147 ggacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataat 211  Q
    |||||| || |||||||||||||||| |||||| | | | |||||||||||||||||||| ||||    
T  4875484 ggacaagatgttctttggtatttcatgtttcctataagattacatgaatgtatctcaacagtaat 4875420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1034 - 1084
Target Start/End: Complemental strand, 22934942 - 22934894
Alignment:
Q  1034 aaactcaaatattttgcacacgcgcacaaccaaaaagtcacttgatgatgt 1084  Q
    ||||||||||||||| ||||||||| ||||  |||||||||||||||||||    
T  22934942 aaactcaaatatttttcacacgcgcgcaac--aaaagtcacttgatgatgt 22934894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 9e-33; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 412 - 536
Target Start/End: Original strand, 356711 - 356835
Alignment:
Q  412 tttagtattagacatcaaatttaaagacaatgaaaatatattagaaaacaattgcatataaaatggagtctagacttgagtttgtataaggatcaactca 511  Q
    |||| ||||||| ||||||||||||||| |||| |||| |||||||| ||||| |||||||||| |||||||||||||||||| ||||  |||||| |||    
T  356711 tttaatattagatatcaaatttaaagacgatgagaatagattagaaagcaatttcatataaaatagagtctagacttgagtttttatattgatcaaatca 356810  T
Q  512 ttagattatttccacaatctcaaga 536  Q
    |||||||||| ||||||||||||||    
T  356811 ttagattattcccacaatctcaaga 356835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 9e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 157 - 340
Target Start/End: Complemental strand, 45963111 - 45962927
Alignment:
Q  157 ttctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgt 256  Q
    |||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||||  ||| ||| ||||| |||||||||||||  |||||||||     
T  45963111 ttctttggtatttcatgtttcatctcaaaatacatgaatgtatctcaacaataatcaagcttatcctcatggtttattatcattgagactctttgagtgc 45963012  T
Q  257 aactttattgtcccaagactc-ttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcac 340  Q
    ||| ||||||||| || ||||   || ||||||| || ||||||||||||| | ||||||||||| ||| | ||| |||||||||    
T  45963011 aaccttattgtccaaaaactcacaaaactattctcatgttttgtttatcttatctaatctcatttgatctaatattaaacttcac 45962927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 328 - 489
Target Start/End: Complemental strand, 12788970 - 12788808
Alignment:
Q  328 tatcaaacttcacttctcgcttattcgtttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggt-tcatcgtttagtattagacat 426  Q
    ||||||||||||| ||||| |  ||||||||||||||||  |||||||  ||| |||||||||||||| |||||| || |  |  |||| ||||||| ||    
T  12788970 tatcaaacttcacctctcggtccttcgtttgatatttgaaatttgattcgataacaatattaaacttcacctttcagtcttttattttaatattagatat 12788871  T
Q  427 caaatttaaagacaatgaaaatatattagaaaacaattgcatataaaatggagtctagacttg 489  Q
    |||||||||||||||||| | || || ||||||||||| |||||||||| |||| || |||||    
T  12788870 caaatttaaagacaatgagagtagataagaaaacaatttcatataaaatagagtgtatacttg 12788808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 156 - 403
Target Start/End: Complemental strand, 28553821 - 28553572
Alignment:
Q  156 attctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtg 255  Q
    ||||||| || |||||| ||| || ||| | |||||||||||||||||| || ||||||| ||| |  | ||||||||||| ||||||| | ||||||||    
T  28553821 attctttagtgtttcatgttttctttcagaatacatgaatgtatctcaataacaatcaagtctacttacatggttgattattattgagaccttttgagtg 28553722  T
Q  256 taact-ttattgtcccaagactcttaat-ctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattc 353  Q
     || | |||||||| |||||||   ||  ||||| | || ||||||| ||||| | ||||||||||| || || ||||||||||||| | ||| |  |||    
T  28553721 caaatattattgtctcaagacttacaaaactattttcatgttttgttcatcttatctaatctcatttgattcaatatcaaacttcacctttcggtccttc 28553622  T
Q  354 gtttgatatttgaggtttgatttaatatcaatattaaacttcccctttcg 403  Q
    |||||||||||||| | ||||  |||| |||||| ||||||| |||||||    
T  28553621 gtttgatatttgagatatgatgaaataacaatatcaaacttcacctttcg 28553572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 892 - 987
Target Start/End: Original strand, 17874694 - 17874789
Alignment:
Q  892 tggcggagacactgcccgtcgatcccgggcactcgtctaggttcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||| ||||||| ||||| ||| ||||| ||||  ||| || |||||||||||||||||||||||||||| ||||||||||  ||||||| |||||    
T  17874694 tggcagagacaccgcccggcgaccccggacacttatctgggctcaatcaatactttctttatactaggtccaacccaatagcccattaactcactt 17874789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 12789135 - 12789051
Alignment:
Q  169 tcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgag 253  Q
    |||| |||||||||| | || | ||| |||||||||||||||||| | ||||||||  |||||||||||||||||| ||||||||    
T  12789135 tcatgtttcctctcagaatatacgaacgtatctcaacaataatcatgcctattctcaaggttgattatcattgagaccctttgag 12789051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 17734719 - 17734805
Alignment:
Q  164 gtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatccttt 250  Q
    ||||||||| |||||| ||| | ||||||||||||||| || || ||||||| ||||| |  ||| ||||||| |||||||||||||    
T  17734719 gtatttcatgtttcctttcagaatacatgaatgtatcttaataacaatcaagcctattattatggatgattattattgagatccttt 17734805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 934 - 987
Target Start/End: Complemental strand, 572373 - 572320
Alignment:
Q  934 tcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||| ||||||||||||||||||||| |||||||||  ||| ||||||||||    
T  572373 tcaatcgatactttctttatactaggtccaacccaataactcaataacccactt 572320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 37627748 - 37627696
Alignment:
Q  218 tattctcttggttgattatcattgagatcctttgagtgtaactttattgtccc 270  Q
    ||||||| ||||||||||||| |||||||||||||||| ||  ||||||||||    
T  37627748 tattctcatggttgattatcactgagatcctttgagtgcaatcttattgtccc 37627696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 5e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 160 - 536
Target Start/End: Complemental strand, 10235097 - 10234718
Alignment:
Q  160 tttggtatttcatatttcctctcacactacatgaatgtatctcaaca--ataatcaagactattctcttggttgattatcattgagatcctttgagtgta 257  Q
    ||||||||||||| ||||||| |  | |||||||||||||||||| |  ||| |||||  |||| || |||||||||||| ||||||||||||||||| |    
T  10235097 tttggtatttcatgtttcctcccgtaatacatgaatgtatctcaaaataatagtcaagcttattttcgtggttgattatcgttgagatcctttgagtgca 10234998  T
Q  258 actttattgtcccaagactct-taatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaactt-cacttctcgcttattcgt 355  Q
    || ||||||||||||||| ||  || ||||||| ||  |||| ||| ||||| ||||||||||| ||| | |||||||||| ||| ||||| |  |||||    
T  10234997 accttattgtcccaagacactcaaaactattctcatgctttgattaccttgtctaatctcattttatcaaatatcaaacttccacctctcggtacttcgt 10234898  T
Q  356 ttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggttcatcgtttagtattagacatcaaatttaaagacaatgaaaatatattag 455  Q
    |||||| ||||  | ||||| |||| |||||| ||||||| ||  ||||| | ||||||  |||| || || ||||||||  |||||   | || |||||    
T  10234897 ttgatacttgaaatatgattaaataacaatatcaaacttcaccgctcggtacttcgtttgatatttgatattaaatttaacaacaatacgattagattag 10234798  T
Q  456 aaaacaattgcatataaaatggagtctagacttgagtttgtataaggatcaactcattagattatttccacaatctcaaga 536  Q
    ||   || | |||||||||| |||| |||||||| ||||  || |||||  | ||||||||||||||| |||||| |||||    
T  10234797 aacgtaaattcatataaaatagagtttagacttgggttt-cattaggattcaatcattagattatttcaacaatcacaaga 10234718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 369 - 521
Target Start/End: Complemental strand, 23395087 - 23394935
Alignment:
Q  369 tttgatttaatatcaatattaaacttcccctttcggttcatcgtttagtattagacatcaaatttaaagacaatgaaaatatattagaaaacaattgcat 468  Q
    ||||||| ||||||||||||||||||| | ||||||||| || |||| ||||||| |||||||||||| || |||| |||| |||||||||||||| |||    
T  23395087 tttgattcaatatcaatattaaacttcacttttcggttcttcatttaatattagatatcaaatttaaaaacgatgagaatagattagaaaacaatttcat 23394988  T
Q  469 ataaaatggagtctagacttgagtttgtataaggatcaactcattagattatt 521  Q
    ||| ||| ||||||||  ||| ||||||||| ||||||| | ||| |||||||    
T  23394987 atataatagagtctagcattgggtttgtatatggatcaaattatttgattatt 23394935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 148 - 366
Target Start/End: Complemental strand, 9046642 - 9046420
Alignment:
Q  148 gacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcc 247  Q
    ||||||||  ||||| | ||||||| |||||| ||| | ||||||||||||||||||  |||||||||  ||||||| || |||||||||||||||| ||    
T  9046642 gacaatattctcttttgcatttcatgtttcctttcagaatacatgaatgtatctcaatgataatcaagcttattctcatgattgattatcattgagaccc 9046543  T
Q  248 tttgagtgtaact-ttat--tgtcccaagactc-ttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttc 343  Q
    ||| ||| ||| | ||||  |||| ||||||||   || ||||||| || |||||||| |||||| |||| ||||||| || | |||||||||||||||     
T  9046542 tttaagtataaatcttattatgtctcaagactcacaaaactattctcatgttttgtttgtcttgtctaatatcatttattctaatatcaaacttcacttt 9046443  T
Q  344 tcgcttattcgtttgatatttga 366  Q
    ||| |  ||||||||||||||||    
T  9046442 tcggtccttcgtttgatatttga 9046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 35103694 - 35103784
Alignment:
Q  165 tatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtg 255  Q
    |||||||| ||| || ||| | ||||||||||||| |||| || || |||| |||||||| ||||||||| ||||||| ||||||| ||||    
T  35103694 tatttcatgttttctttcagaatacatgaatgtatttcaataacaaccaagtctattctcatggttgattgtcattgaaatcctttaagtg 35103784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 11281668 - 11281615
Alignment:
Q  311 aatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatattt 364  Q
    ||||||||||  |||||||||||||||||||| ||| | |||||||| ||||||    
T  11281668 aatctcatttgttccagtatcaaacttcacttttcggtcattcgtttaatattt 11281615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 157 - 405
Target Start/End: Complemental strand, 26266884 - 26266636
Alignment:
Q  157 ttctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgt 256  Q
    |||||| |||||| || |||||| | | | ||||| |||||||||||| ||||||||||  ||||||| ||||||||||||||||||| ||||| ||||     
T  26266884 ttctttcgtattttatgtttcctttgagaatacataaatgtatctcaataataatcaagtttattctcatggttgattatcattgagaccctttaagtgc 26266785  T
Q  257 aactttattgtcccaagactc-ttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgt 355  Q
    | ||||||| || ||||||||   || ||||||| || |||||||||| |||| | ||||||||| ||||| |||||||| |||| | ||  |  ||| |    
T  26266784 atctttattatctcaagactcacaaaactattcttatgttttgtttatattgtcttatctcatttgatccaatatcaaacctcacatttcagtccttcat 26266685  T
Q  356 ttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggt 405  Q
    |||||||||||| | ||| | |||| |||||| ||||||| | |||||||    
T  26266684 ttgatatttgagatatga-taaataacaatatcaaacttcacttttcggt 26266636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 362 - 514
Target Start/End: Complemental strand, 24887212 - 24887060
Alignment:
Q  362 tttgaggtttgatttaatatcaatattaaacttcccctttcggttcatcgtttagtattagacatcaaatttaaagacaatgaaaatatattagaaaaca 461  Q
    ||||| ||||||||| ||| |||||||||| ||| || ||| |||| | ||||| ||||| | |||||||||| |||| | || |||| ||||| |||||    
T  24887212 tttgaagtttgatttgataccaatattaaatttcaccattcagttctttgtttaatattaaatatcaaatttagagacgacgataatagattaggaaaca 24887113  T
Q  462 attgcatataaaatggagtctagacttgagtttgtataaggatcaactcatta 514  Q
    ||| |||||||||| |||  |||||||||||||||||| ||||||| ||||||    
T  24887112 atttcatataaaatagagcatagacttgagtttgtatatggatcaaatcatta 24887060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 1589666 - 1589758
Alignment:
Q  161 ttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgag 253  Q
    ||||||| |||| |||||||||| | |||||||| ||||||||||||||||||||  |||| || ||||||||||||||||||| ||||||||    
T  1589666 ttggtatatcatgtttcctctcataatacatgaacgtatctcaacaataatcaagtttattttcatggttgattatcattgagaccctttgag 1589758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 689 - 825
Target Start/End: Complemental strand, 20056585 - 20056447
Alignment:
Q  689 catcgatgcaacaattgagacacaaagaagtgagaaggagagaaagagttttattgacccacaccctccaccagagctaccagatcgaccttcatcacaa 788  Q
    |||||||| | ||| |||||||||||||||||| |||||||||| || |||||  || ||||||||| || | || | ||||||||  ||||||||||||    
T  20056585 catcgatgaagcaactgagacacaaagaagtgataaggagagaaggatttttaccgatccacacccttcatcggaaccaccagatccgccttcatcacaa 20056486  T
Q  789 tcaccaccgccaga--cacaaatcgtatgacttatgtgc 825  Q
    ||||||||||||||   ||||||| ||||||| ||||||    
T  20056485 tcaccaccgccagagtaacaaatcctatgactcatgtgc 20056447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 920 - 987
Target Start/End: Complemental strand, 19519173 - 19519106
Alignment:
Q  920 gcactcgtctaggttcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||||||  || |||||| ||||||||||||||||||||| |||||||||  | ||||||||||||    
T  19519173 gcactcgtccgggctcaatcgatactttctttatactaggtccaacccaataacttattaacccactt 19519106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 24887427 - 24887335
Alignment:
Q  161 ttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgag 253  Q
    ||||||| |||| |||||||| | | ||||||||  | ||||||||||||||||  |||||||| |||||| ||||||| |||| ||| ||||    
T  24887427 ttggtatatcatgtttcctcttagaatacatgaacatttctcaacaataatcaaatctattctcatggttggttatcatcgagaccctatgag 24887335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 26069485 - 26069559
Alignment:
Q  294 ttttgtttatcttgtataatctcatttaatccagtatcaaactt-cacttctcgcttattcgtttgatatttgag 367  Q
    ||||||| ||||||| ||||||||||| ||||| |||| ||||| ||| | ||| | ||||||||||||||||||    
T  26069485 ttttgttcatcttgtctaatctcatttgatccaatatcgaacttccacctttcgatcattcgtttgatatttgag 26069559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 934 - 987
Target Start/End: Complemental strand, 38269558 - 38269505
Alignment:
Q  934 tcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||||| |||||||||||||  |||  ||||||||||||| |||||||||||    
T  38269558 tcaatcaacactttctttatacatggtacaacccaatagttcgttaacccactt 38269505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 157 - 414
Target Start/End: Original strand, 33168003 - 33168261
Alignment:
Q  157 ttctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgt 256  Q
    |||||||||||||||| |||| ||||  | ||| ||||||||| |||||||||||||||  |||| || |||| |||||||||||||| ||| ||||||     
T  33168003 ttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcttattttcatggtcgattatcattgagagcctatgagtgc 33168102  T
Q  257 aactttattgtcccaagactc-ttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgt 355  Q
    ||  |||||||  ||||||||   ||  |||| | || ||||||||||||||| ||||||||||| || || ||| ||| ||| | ||||| || ||| |    
T  33168103 aatcttattgtttcaagactcacaaaaatattttcatgttttgtttatcttgtctaatctcatttgattcaatattaaatttcccatctcggttcttcat 33168202  T
Q  356 ttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggttcatcgttt 414  Q
    ||| |||||||| | ||||| |||| ||||||  |||||| | | ||||||| ||||||    
T  33168203 ttgctatttgagatatgattaaataacaatatctaacttcacttctcggttcttcgttt 33168261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 352 - 457
Target Start/End: Original strand, 45503760 - 45503867
Alignment:
Q  352 tcgtttgatatttgaggtttgatttaatatcaatattaaacttcccctttcggttcatcgtttagtatta--gacatcaaatttaaagacaatgaaaata 449  Q
    ||||||||||||||| ||||||||  |||||||||||||||||| | ||||||||| ||||||| |||||  |||||||||||||||||| |||| ||||    
T  45503760 tcgtttgatatttgaagtttgattcgatatcaatattaaacttcacatttcggttcttcgtttaatattaatgacatcaaatttaaagactatgagaata 45503859  T
Q  450 tattagaa 457  Q
     |||||||    
T  45503860 gattagaa 45503867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 369 - 530
Target Start/End: Complemental strand, 27933401 - 27933243
Alignment:
Q  369 tttgatttaatatcaatattaaacttcccctttcggttcatcgtttagtattagacatcaaatttaaagacaatgaaaatatattagaaaacaattgcat 468  Q
    |||||||  ||| |||||||||||||| || |||||| | ||||| | ||||| | |||||||||||||||||||| |||| |||||||||||||| |||    
T  27933401 tttgattcgataacaatattaaacttcaccgttcggtccttcgttaa-tattatatatcaaatttaaagacaatgagaatagattagaaaacaatttcat 27933303  T
Q  469 ataaaatggagtctagacttgagtttgtataaggatcaactcattagattatttccacaatc 530  Q
    ||||||| ||||||| ||||| ||||| || |||||  | ||| ||||||||||| ||||||    
T  27933302 ataaaatagagtctaaacttg-gtttgaat-aggattcaatcaatagattatttcaacaatc 27933243  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 934 - 987
Target Start/End: Original strand, 32342773 - 32342826
Alignment:
Q  934 tcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||| |||||||||||||| |||||| ||||||||||| |||||||||||||    
T  32342773 tcaatcgatactttctttatattaggtccaacccaatagtccattaacccactt 32342826  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 934 - 987
Target Start/End: Original strand, 32355260 - 32355313
Alignment:
Q  934 tcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||| |||||||||||||| |||||| ||||||||||| |||||||||||||    
T  32355260 tcaatcgatactttctttatattaggtccaacccaatagtccattaacccactt 32355313  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 934 - 987
Target Start/End: Original strand, 32359378 - 32359431
Alignment:
Q  934 tcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||| |||||||||||||| |||||| ||||||||||| |||||||||||||    
T  32359378 tcaatcgatactttctttatattaggtccaacccaatagtccattaacccactt 32359431  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 934 - 987
Target Start/End: Original strand, 32371914 - 32371967
Alignment:
Q  934 tcaatcaatactttctttatactaggtctaacccaatagttcattaacccactt 987  Q
    |||||| |||||||||||||| |||||| ||||||||||| |||||||||||||    
T  32371914 tcaatcgatactttctttatattaggtccaacccaatagtccattaacccactt 32371967  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 284 - 414
Target Start/End: Original strand, 17337036 - 17337165
Alignment:
Q  284 tattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatatttgaggtttgatttaatatca 383  Q
    |||||| |||||||||| || |||| ||||||||||| || || ||||||||||||||| ||| |  ||| ||||||||| ||| | ||| | |||| ||    
T  17337036 tattctcatattttgttgatattgtctaatctcatttgattcaatatcaaacttcacttttcgttccttcatttgatattagagatatga-taaataaca 17337134  T
Q  384 atattaaacttcccctttcggttcatcgttt 414  Q
    |||| ||||||| | ||||||| | ||||||    
T  17337135 atatcaaacttcacatttcggtccttcgttt 17337165  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 27933746 - 27933685
Alignment:
Q  86 atctaattcttagtttcgattagctaaaaaaggaataagtttttaagagcaatgtttgtttgg 148  Q
    |||||||||| ||||| | |||||| |||||| ||||||||||| |||| |||||||||||||    
T  27933746 atctaattctcagttttgtttagctgaaaaag-aataagttttttagagtaatgtttgtttgg 27933685  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 12521690 - 12521649
Alignment:
Q  160 tttggtatttcatatttcctctcacactacatgaatgtatct 201  Q
    ||||||||||||| |||||||| ||| |||||||||||||||    
T  12521690 tttggtatttcatgtttcctctaacaatacatgaatgtatct 12521649  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 13539582 - 13539683
Alignment:
Q  294 ttttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatatttgaggtttgatttaatatcaatattaaact 393  Q
    ||||||| ||||||| ||||||||||| || || ||| ||||||||| | ||| |  |||||||| |||||||| | ||||  |||| |||||| |||||    
T  13539582 ttttgttcatcttgtctaatctcatttgattcaatattaaacttcacctttcggtctttcgtttggtatttgagatctgatgaaataacaatatcaaact 13539681  T
Q  394 tc 395  Q
    ||    
T  13539682 tc 13539683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 395
Target Start/End: Complemental strand, 13684892 - 13684791
Alignment:
Q  294 ttttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgcttattcgtttgatatttgaggtttgatttaatatcaatattaaact 393  Q
    ||||||| ||||||| ||||||||||| || || ||| ||||||||| | ||| |  |||||||| |||||||| | ||||  |||| |||||| |||||    
T  13684892 ttttgttcatcttgtctaatctcatttgattcaatattaaacttcacctttcggtctttcgtttggtatttgagatctgatgaaataacaatatcaaact 13684793  T
Q  394 tc 395  Q
    ||    
T  13684792 tc 13684791  T

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Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 155 - 366
Target Start/End: Original strand, 31817471 - 31817684
Alignment:
Q  155 tattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagt 254  Q
    |||||||| ||||||||| |||||| ||| | | ||||  |||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||| |||    
T  31817471 tattcttttgtatttcatgtttcctttcaaaattcatg--tgtatctcaataataatcaagcctattctcatggttgattatcattgagaccctttaagt 31817568  T
Q  255 gtaa--ctt-tattgtcccaagact-cttaatctattctaatattttgtttatcttgtataatctcatttaatccagtatcaaacttcacttctcgctta 350  Q
     |||  ||| | ||||| ||||| |    || ||||||| || ||||| ||||||| | |||||||||||  || | ||||||||||||| | ||| |      
T  31817569 ataaatcttattttgtctcaagattaacaaaactattctcatgttttgcttatcttctctaatctcatttgttctaatatcaaacttcacctttcggtcc 31817668  T
Q  351 ttcgtttgatatttga 366  Q
    ||||||||||||||||    
T  31817669 ttcgtttgatatttga 31817684  T

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Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 215537 - 215426
Alignment:
Q  161 ttggtatttcatatttcctctcacactacatgaatgtatctcaacaataatcaagactattctcttggttgattatcattgagatcctttgagtgtaact 260  Q
    |||||||  ||| |||||||||  | |||||||| ||||||||||||| |||| | |||||||| ||||||| |||| ||||||  ||||| |  |||||    
T  215537 ttggtataacatgtttcctctcggaatacatgaacgtatctcaacaatcatcacgcctattctcatggttgaatatcgttgagactctttgggcataact 215438  T
Q  261 ttattgtcccaa 272  Q
    ||||||||||||    
T  215437 ttattgtcccaa 215426  T

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Target: scaffold1485 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold1485
Description:

Target: scaffold1485; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 1247 - 1311
Alignment:
Q  147 ggacaatatattctttggtatttcatatttcctctcacactacatgaatgtatctcaacaataat 211  Q
    |||||| || |||||||||||||||| |||||| | | | |||||||||||||||||||| ||||    
T  1247 ggacaagatgttctttggtatttcatgtttcctataagattacatgaatgtatctcaacagtaat 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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