View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_low_13 (Length: 313)
Name: NF21462_low_13
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 49 - 298
Target Start/End: Original strand, 3806981 - 3807230
Alignment:
| Q |
49 |
aataaaaacacgacttgaataaatgctatatttgtttattaataaatatgatttaaatttgcttttgttccaaaatcatttgattttggtgtagaccaat |
148 |
Q |
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| T |
3806981 |
aataaaaacacgacttggataaatgctatatttgtttattaataaatatgatttaaatttgcttttgttccaaaatcatttgattttggtttagaccaat |
3807080 |
T |
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| Q |
149 |
atagataacacaagttctttggagacaaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtggaacagtgtgtggctgcaccagaa |
248 |
Q |
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| T |
3807081 |
atagataacacaagttctttggagactaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtggaacagtgtgtggctgcaccagaa |
3807180 |
T |
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| Q |
249 |
agaagggtgctatcacctcttgccgagactgcttaatgagggaagttttt |
298 |
Q |
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| T |
3807181 |
agaagattgctatcacctcttgccgagactgcttaatgagggaagttttt |
3807230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 126 - 296
Target Start/End: Original strand, 3775101 - 3775274
Alignment:
| Q |
126 |
atttgattttggtgtagaccaatatagataacacaagttctttggagacaaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtgg |
225 |
Q |
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| T |
3775101 |
atttaattttggtgcagaccaatatatacagaacaagttctttggagacaaagataaggagtgccactaaagaagctattcaagaaataaaaagctgtga |
3775200 |
T |
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| Q |
226 |
aacagtgtgtggctgcaccagaaa---gaagggtgctatcacctcttgccgagactgcttaatgagggaagttt |
296 |
Q |
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| T |
3775201 |
agcagtgtgtggctgcaacagaaagatgatgggtgccatcaccacctgcagaaactgcttaatgagggaagttt |
3775274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 3806915 - 3806967
Alignment:
| Q |
4 |
tgtgtgtgttatatttttaaattaatttcaatacttatcagcaaaaataaaaa |
56 |
Q |
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| T |
3806915 |
tgtgtgtgtgttatttttaaattaatttcaatacttatcagcaaaaataaaaa |
3806967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 3775024 - 3775072
Alignment:
| Q |
89 |
aataaatatgatttaaatttgcttttgttccaaaatcatttgattttgg |
137 |
Q |
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| T |
3775024 |
aataaatatgatttaaattttcttttgttccaaaagcattagattttgg |
3775072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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