View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_low_19 (Length: 285)
Name: NF21462_low_19
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 37748453 - 37748710
Alignment:
| Q |
12 |
agagatgatcagatttaccggtgacaagtgctttctgaagctgtccacttattccagtactccaaggtctaacaatagctaacttattggttttacaaag |
111 |
Q |
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| T |
37748453 |
agagatggtcagatttaccggtgacaagtgctttctgaagctgtccacttattccagtactccaaggtctaacaatagctaacttattggttttacaaag |
37748552 |
T |
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| Q |
112 |
atatataccaatgcttgaaataacaagaaaaacagcaccaccaataattactccagcaaaaataggaacttgattcttctttgacagtggaggaagagaa |
211 |
Q |
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| T |
37748553 |
atatataccaatgcttgaaataacaagaaaaacagcaccaccaataattactccagcaaaaataggaacttgattcttctttgacagtggaggaagagaa |
37748652 |
T |
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| Q |
212 |
tcagaagcatttttatttggagattctgaagcattttgaataggagaatccgaagatg |
269 |
Q |
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| T |
37748653 |
tcagaagcatttttatttggagattctgaagcattttgaataggagaatccgaagatg |
37748710 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 32067510 - 32067618
Alignment:
| Q |
24 |
atttaccggtgacaagtgctttctgaagctgtccacttattccagtactccaaggtctaacaatagctaacttattggttttacaaagatatataccaat |
123 |
Q |
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| T |
32067510 |
atttacctgtcacaaatgccttctgaagctgtccacttaatcctgtagcccatggtttaacggtggctaccttgttggttttaaagagatatatgacaat |
32067609 |
T |
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| Q |
124 |
gcttgaaat |
132 |
Q |
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| T |
32067610 |
gcttaaaat |
32067618 |
T |
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