View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_low_22 (Length: 274)
Name: NF21462_low_22
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 8756586 - 8756342
Alignment:
| Q |
13 |
aatatcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaacta |
112 |
Q |
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| T |
8756586 |
aatatcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaacta |
8756487 |
T |
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| Q |
113 |
gacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcataca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8756486 |
gacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcgtaca |
8756387 |
T |
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| Q |
213 |
ttcaagaaaattttggttggattattggatttggtgtccctgttg |
257 |
Q |
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| T |
8756386 |
ttcaagaaaattttggttggattattggatttggtgtccctgttg |
8756342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 8749032 - 8748791
Alignment:
| Q |
16 |
atcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagac |
115 |
Q |
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| T |
8749032 |
atcacaacttgctttcttatactcttctctatgcctaatcgccattggagctggtggtgtaagagcttcttccttaccctttggcattgaccaactagac |
8748933 |
T |
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| Q |
116 |
aaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |||||||| |||| |
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| T |
8748932 |
aaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttagcaacagctgcagttttaattggaacgaccattttggcatatattc |
8748833 |
T |
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| Q |
216 |
aagaaaattttggttggattattggatttggtgtccctgttg |
257 |
Q |
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| T |
8748832 |
aagaaaattttggttggattgttggatttggtttacctgttg |
8748791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 8766602 - 8766361
Alignment:
| Q |
16 |
atcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagac |
115 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||| || |
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| T |
8766602 |
atcacagcttgctttcttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaactaaac |
8766503 |
T |
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| Q |
116 |
aaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||| | |||||||| |||| |
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| T |
8766502 |
aaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttaacagcagctgcagtcctaactggaatgaccgttttggcatatattc |
8766403 |
T |
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| Q |
216 |
aagaaaattttggttggattattggatttggtgtccctgttg |
257 |
Q |
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|||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
8766402 |
aagaaatttttggttggatggttggatttggtgtacctgttg |
8766361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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