View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21462_low_25 (Length: 253)

Name: NF21462_low_25
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21462_low_25
NF21462_low_25
[»] chr2 (21 HSPs)
chr2 (138-238)||(12798799-12798899)
chr2 (3-94)||(12798966-12799058)
chr2 (47-124)||(29108794-29108871)
chr2 (4-97)||(26852962-26853056)
chr2 (48-124)||(35470330-35470406)
chr2 (29-124)||(16711840-16711935)
chr2 (35-122)||(8329623-8329709)
chr2 (27-85)||(13827333-13827391)
chr2 (4-85)||(17932229-17932311)
chr2 (27-99)||(2429630-2429703)
chr2 (48-124)||(15658769-15658845)
chr2 (27-95)||(28580423-28580491)
chr2 (28-91)||(32143615-32143678)
chr2 (27-79)||(29740718-29740770)
chr2 (35-94)||(45716503-45716562)
chr2 (28-121)||(34393941-34394035)
chr2 (35-124)||(6599400-6599488)
chr2 (39-92)||(7701823-7701876)
chr2 (39-99)||(9620643-9620703)
chr2 (13-60)||(23740062-23740110)
chr2 (27-63)||(45134472-45134508)
[»] chr5 (20 HSPs)
chr5 (4-124)||(29144347-29144467)
chr5 (37-97)||(24181449-24181509)
chr5 (3-97)||(24196376-24196472)
chr5 (39-97)||(26296444-26296502)
chr5 (27-96)||(7313254-7313323)
chr5 (13-99)||(33382285-33382372)
chr5 (13-97)||(15645622-15645706)
chr5 (27-86)||(19366804-19366863)
chr5 (50-97)||(22732006-22732053)
chr5 (27-85)||(4049581-4049639)
chr5 (13-98)||(8955208-8955294)
chr5 (3-91)||(5411973-5412061)
chr5 (39-124)||(5471543-5471627)
chr5 (29-86)||(41868830-41868887)
chr5 (27-97)||(5091780-5091850)
chr5 (35-92)||(14148326-14148383)
chr5 (35-104)||(19336838-19336906)
chr5 (70-99)||(32310887-32310916)
chr5 (27-92)||(35626466-35626531)
chr5 (87-123)||(20175228-20175264)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-103)||(185489-185571)
[»] chr6 (10 HSPs)
chr6 (27-109)||(31955638-31955720)
chr6 (3-97)||(34629031-34629126)
chr6 (27-103)||(21608202-21608278)
chr6 (35-97)||(31330516-31330578)
chr6 (43-99)||(2656424-2656480)
chr6 (27-84)||(30533711-30533768)
chr6 (39-122)||(29608421-29608504)
chr6 (43-93)||(2667085-2667135)
chr6 (1-61)||(2865104-2865165)
chr6 (39-83)||(6030957-6031001)
[»] chr4 (34 HSPs)
chr4 (27-97)||(47089207-47089277)
chr4 (27-97)||(38609093-38609163)
chr4 (27-86)||(2905509-2905568)
chr4 (27-124)||(45983155-45983252)
chr4 (27-97)||(47750464-47750534)
chr4 (33-97)||(36860290-36860354)
chr4 (35-99)||(48743459-48743523)
chr4 (27-85)||(17405815-17405873)
chr4 (27-85)||(28777344-28777402)
chr4 (39-97)||(36619938-36619996)
chr4 (39-97)||(49081312-49081370)
chr4 (27-124)||(26194508-26194605)
chr4 (27-92)||(49242410-49242474)
chr4 (39-99)||(1955284-1955344)
chr4 (27-122)||(20922663-20922758)
chr4 (39-99)||(32056321-32056381)
chr4 (35-94)||(41454967-41455026)
chr4 (48-122)||(7633201-7633274)
chr4 (35-97)||(34015720-34015782)
chr4 (35-96)||(12763432-12763493)
chr4 (35-92)||(19466032-19466089)
chr4 (27-100)||(21139314-21139387)
chr4 (39-124)||(47742801-47742884)
chr4 (48-124)||(33033263-33033337)
chr4 (28-124)||(42274335-42274430)
chr4 (3-86)||(42915748-42915832)
chr4 (27-82)||(6167703-6167758)
chr4 (39-94)||(50498874-50498929)
chr4 (27-82)||(53374992-53375047)
chr4 (4-97)||(37588817-37588909)
chr4 (48-97)||(1051784-1051833)
chr4 (40-85)||(4826493-4826538)
chr4 (88-124)||(31314354-31314390)
chr4 (41-122)||(45739508-45739591)
[»] scaffold0735 (1 HSPs)
scaffold0735 (3-91)||(928-1017)
[»] chr1 (13 HSPs)
chr1 (3-91)||(42887975-42888064)
chr1 (35-94)||(43638397-43638456)
chr1 (13-92)||(52012459-52012538)
chr1 (27-104)||(4612425-4612505)
chr1 (3-99)||(31647628-31647725)
chr1 (27-100)||(37694991-37695066)
chr1 (35-82)||(14171826-14171873)
chr1 (50-97)||(27919167-27919214)
chr1 (45-94)||(6395464-6395513)
chr1 (39-99)||(963948-964008)
chr1 (35-91)||(49372562-49372617)
chr1 (13-84)||(42629328-42629398)
chr1 (35-73)||(20997720-20997758)
[»] chr3 (25 HSPs)
chr3 (3-91)||(42678269-42678358)
chr3 (25-122)||(55142339-55142436)
chr3 (27-99)||(31064569-31064641)
chr3 (27-86)||(30917085-30917144)
chr3 (35-122)||(50662484-50662571)
chr3 (35-89)||(40892798-40892852)
chr3 (39-97)||(53653110-53653168)
chr3 (35-94)||(38832955-38833014)
chr3 (27-85)||(31316006-31316064)
chr3 (13-97)||(17947360-17947445)
chr3 (27-92)||(27659755-27659820)
chr3 (27-99)||(53099576-53099647)
chr3 (27-92)||(48290226-48290294)
chr3 (27-92)||(38576318-38576383)
chr3 (35-92)||(41898181-41898238)
chr3 (35-91)||(9099181-9099237)
chr3 (27-91)||(23160664-23160728)
chr3 (28-79)||(37677367-37677418)
chr3 (33-91)||(28233463-28233521)
chr3 (35-85)||(32497837-32497887)
chr3 (27-85)||(34664271-34664329)
chr3 (39-124)||(23089309-23089393)
chr3 (33-77)||(46543536-46543581)
chr3 (35-92)||(51490217-51490274)
chr3 (30-82)||(277548-277600)
[»] chr8 (23 HSPs)
chr8 (35-124)||(44362259-44362348)
chr8 (27-97)||(40891894-40891964)
chr8 (35-122)||(18087249-18087334)
chr8 (39-98)||(26491449-26491508)
chr8 (48-124)||(7662326-7662402)
chr8 (28-124)||(8457549-8457645)
chr8 (28-80)||(30157742-30157794)
chr8 (3-97)||(6599502-6599597)
chr8 (3-97)||(6674955-6675050)
chr8 (35-85)||(13015430-13015480)
chr8 (27-97)||(15021364-15021434)
chr8 (35-97)||(42563188-42563250)
chr8 (35-92)||(27924483-27924540)
chr8 (35-94)||(24184588-24184647)
chr8 (34-97)||(30157836-30157899)
chr8 (4-101)||(31330115-31330216)
chr8 (35-82)||(33986869-33986916)
chr8 (50-97)||(45114681-45114728)
chr8 (35-92)||(468137-468194)
chr8 (39-92)||(6509984-6510037)
chr8 (67-124)||(23722248-23722305)
chr8 (39-91)||(16938900-16938952)
chr8 (88-124)||(24261365-24261401)
[»] chr7 (13 HSPs)
chr7 (35-123)||(9047066-9047154)
chr7 (27-97)||(26453891-26453961)
chr7 (35-96)||(43496204-43496264)
chr7 (25-97)||(6221091-6221163)
chr7 (50-106)||(24495335-24495391)
chr7 (26-97)||(30898093-30898164)
chr7 (35-93)||(45879113-45879171)
chr7 (48-98)||(8919379-8919429)
chr7 (27-124)||(25790122-25790218)
chr7 (28-93)||(30198319-30198384)
chr7 (27-92)||(34224317-34224382)
chr7 (27-60)||(46338427-46338460)
chr7 (35-99)||(40417692-40417756)
[»] scaffold0191 (1 HSPs)
scaffold0191 (35-97)||(4538-4600)
[»] scaffold0603 (2 HSPs)
scaffold0603 (48-124)||(6930-7006)
scaffold0603 (48-124)||(7053-7128)
[»] scaffold0076 (1 HSPs)
scaffold0076 (27-92)||(2193-2257)
[»] scaffold0257 (1 HSPs)
scaffold0257 (27-91)||(18826-18890)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 12798899 - 12798799
Alignment:
Q  138 tggtttggcctcgtgtcacgagtcacgggtgtctttactcacttgacatgtgctgccaaaaccaaacatactttattgttcgttcacttcttccatgtaa 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12798899 tggtttggcctcgtgtcacgagtcacgggtgtctttactcacttgacatgtgctgccaaaaccaaacatactttattgttcgttcacttcttccatgtaa 12798800  T
Q  238 g 238  Q
    |    
T  12798799 g 12798799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 12799058 - 12798966
Alignment:
Q  3 caaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacca 94  Q
    |||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  12799058 caaaatcattattaaaagcagcactttttcaaatttcaaaaagtaaaatacacaattttcgataatatatttccttttataattctttaacca 12798966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 29108794 - 29108871
Alignment:
Q  47 aaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||   ||||||||||||||||||    
T  29108794 aaatacacaattttcaagaaaatatttccttttataattccttaaccagtgtcgcgggagcaccgattaacatttccc 29108871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 26852962 - 26853056
Alignment:
Q  4 aaagtcaatattaaaagcatcacttttc-aaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||| || |||||||||| |||||||  ||||||||||||||||||||||| |||||||| |||| |||| |||||||| ||||||||| ||||    
T  26852962 aaagtaaacattaaaagcaacactttttgaaatttcaaaaagtaaaatacactattttcaagaaaacatttacttttatatttctttaactagtg 26853056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 35470330 - 35470406
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    ||||||||||||||||  ||||||||||||| ||||||| |||||||||| | ||||| ||||| ||||||||||||    
T  35470330 aatacacaattttcaaggaaatatttcctttaataattccttaaccagtgccccggaggcaccggttaacatttccc 35470406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 16711840 - 16711935
Alignment:
Q  29 ttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    ||||| |||||||||||||||||||||||||   | |||| |||||||||||||||||||||| |||||   ||| | ||| ||||||||||||||    
T  16711840 ttcaagtttcaaaaagtaaaatacacaatttctgagaaaacatttccttttataattctttaatcagtgcgccgggggcactgattaacatttccc 16711935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 8329709 - 8329623
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 122  Q
    |||||||||||| |||||| ||||| ||| | ||||||||||| |||||||| ||||| ||| || ||||| ||||||||||||||||    
T  8329709 tttcaaaaagtagaatacataatttccaaaataatatttccttatataattccttaacaagtatcccggag-caccgattaacatttc 8329623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 13827333 - 13827391
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||| | ||||||||    
T  13827333 ttttcaagtttcaaaaagtaacatacacaattttcaaaaaaatatttcttcttataatt 13827391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 17932311 - 17932229
Alignment:
Q  4 aaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    |||||||||||||||||||  |||||| ||| || |||||||||||||| ||| ||||||| |||| ||||||||| ||||||    
T  17932311 aaagtcaatattaaaagcaatactttttcaagttacaaaaagtaaaatagacagttttcaaaaaaacatttcctttaataatt 17932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 2429703 - 2429630
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttc-aataaaatatttccttttataattctttaaccagtgtc 99  Q
    ||||||||||||||||| ||||||| ||||||||| ||  |||||||| |||||||||| ||||||| ||||||    
T  2429703 ttttcaaatttcaaaaaataaaatatacaattttcaaagtaaatattttcttttataatactttaactagtgtc 2429630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 15658845 - 15658769
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||||||| |||| ||||||||||||| ||||||| |||| ||||| | ||||  ||| ||||||||||||||    
T  15658845 aatacacaatttccaatgaaatatttcctttaataattccttaatcagtgccccggatgcactgattaacatttccc 15658769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 28580423 - 28580491
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccag 95  Q
    ||||||| ||| ||||| |||||||||||||||  |  ||||||||| |||||||||||||||||||||    
T  28580423 ttttcaacttttaaaaaataaaatacacaatttctataaaaatattttcttttataattctttaaccag 28580491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 32143678 - 32143615
Alignment:
Q  28 tttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    |||||| ||| ||||| || |||||||||||||||| ||||||||| ||||| |||||||||||    
T  32143678 tttcaacttttaaaaaatagaatacacaattttcaagaaaatattttcttttctaattctttaa 32143615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 29740770 - 29740718
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttcctttt 79  Q
    |||| |||||| ||||||||||||||||||||| | | |||||||||||||||    
T  29740770 tttttaaattttaaaaagtaaaatacacaatttcctagaaaatatttcctttt 29740718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 45716503 - 45716562
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacca 94  Q
    |||||||||||| ||| || ||||| ||| | |||||||||||||||||||| |||||||    
T  45716503 tttcaaaaagtagaatccataatttccaagacaatatttccttttataattccttaacca 45716562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 34393941 - 34394035
Alignment:
Q  28 tttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttcctttt-ataattctttaaccagtgtctcggagacaccgattaacattt 121  Q
    |||||| ||| ||||| || ||||||||||||| || |||||||||| ||||  |||||| |||| |||| || ||||||||||  |||||||||    
T  34393941 tttcaacttttaaaaaatagaatacacaatttttaaaaaaatatttcattttcctaattccttaatcagtatcccggagacaccatttaacattt 34394035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 6599400 - 6599488
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||||||| ||||||||||||  | | | | ||||||||||||||||  |||||||||| | ||||||||  | ||||||||||||    
T  6599400 tttcaaaaagtataatacacaatttcaactcaga-atttccttttataatttcttaaccagtgccccggagacattggttaacatttccc 6599488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 7701823 - 7701876
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    |||| |||||||| |||||||| |  |||||||||| |||||||||||||||||    
T  7701823 aaaatgtaaaatatacaatttttacaaaaatatttcattttataattctttaac 7701876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 9620643 - 9620703
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    |||||||| |||| |||||||| || || ||||||| ||||||||||| ||||| ||||||    
T  9620643 aaaaagtagaatatacaatttttaaaaatatatttctttttataattccttaacaagtgtc 9620703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 23740062 - 23740110
Alignment:
Q  13 attaaaagcatcactttt-caaatttcaaaaagtaaaatacacaatttt 60  Q
    |||||||||| ||||||| ||| ||| ||||||||||||||||||||||    
T  23740062 attaaaagcaacactttttcaagttttaaaaagtaaaatacacaatttt 23740110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 45134508 - 45134472
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaa 63  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  45134508 ttttcaagttttaaaaagtaaaatacacaattttcaa 45134472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 29144347 - 29144467
Alignment:
Q  4 aaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcg 102  Q
    |||||||  |||||||||| ||||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||  ||||| |||||||||    
T  29144347 aaagtcagcattaaaagcaacactttttcaaatttcagaaaataaaatacacaatttccaaaaaaatatttccttttataatttcttaactagtgtctcg 29144446  T
Q  103 gagacaccgattaacatttccc 124  Q
    | ||||||||| ||||||||||    
T  29144447 g-gacaccgatcaacatttccc 29144467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 24181509 - 24181449
Alignment:
Q  37 tcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  24181509 tcaaaaagtaaaatacacaattttcaatacaatatttccttttataattccttaaccagtg 24181449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 24196376 - 24196472
Alignment:
Q  3 caaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaata-aaatatttccttttataattctttaaccagtg 97  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||| ||||| ||||    
T  24196376 caaagtcaacattaaaagcaacactttttcaaatttcaaaaagtaaaatacacaattttcaaaataaacatttccttttacaattccttaactagtg 24196472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 26296444 - 26296502
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  26296444 aaaaagtagaatacacaatttccaatacaatatttccttttataattctttaaccagtg 26296502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 7313254 - 7313323
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagt 96  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||| |||||    
T  7313254 ttttcaagtttcaaaaagtaatatacacaattttcaagaaaatatttctttttataattccttatccagt 7313323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 33382285 - 33382372
Alignment:
Q  13 attaaaagcatcacttttcaaa-tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    |||||||||| |||||||  || ||||||||||||||||||||||||||  | |||| |||| |||||||||||||||||| ||||||    
T  33382285 attaaaagcaacacttttttaagtttcaaaaagtaaaatacacaatttttgagaaaacattttcttttataattctttaactagtgtc 33382372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 15645706 - 15645622
Alignment:
Q  13 attaaaagcatcacttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||| || || |||| |||||||||||| ||||||||| |||||  || |||| |||| |||||||||||||||||| ||||    
T  15645706 attaaaaacaacattttttaaatttcaaaaactaaaatacataatttctaaaaaaacatttacttttataattctttaactagtg 15645622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 19366804 - 19366863
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattc 86  Q
    ||||||| |||||||||||| |||||||||||| ||| | ||| ||||||||||||||||    
T  19366804 ttttcaactttcaaaaagtagaatacacaatttccaagacaatgtttccttttataattc 19366863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 22732006 - 22732053
Alignment:
Q  50 tacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  22732006 tacacaattttcaagaaaatatttccttttatgattctttaactagtg 22732053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 4049581 - 4049639
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    ||||||||||||||||| ||||||||||||||| | | || | ||||||||||||||||    
T  4049581 ttttcaaatttcaaaaaataaaatacacaatttccgaaaacacatttccttttataatt 4049639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 8955208 - 8955294
Alignment:
Q  13 attaaaagcatcactt-ttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgt 98  Q
    |||||||||| ||| | ||||| ||||||||| ||||||||||||||||| | |||||||||  ||||||||||  ||||| |||||    
T  8955208 attaaaagcaacacctattcaagtttcaaaaactaaaatacacaattttcgagaaaatatttttttttataatttcttaactagtgt 8955294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 5411973 - 5412061
Alignment:
Q  3 caaagtcaatattaaaagcatcacttttcaaatttc-aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    ||||||||| |||||| ||| || ||||| |||||  ||||||||||||||||||||||| | ||||||||| |||||| ||||| ||||    
T  5411973 caaagtcaacattaaa-gcaacatttttccaatttttaaaaagtaaaatacacaattttcgaaaaaatattttcttttagaattccttaa 5412061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 5471543 - 5471627
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||| ||||||||||||| || | ||||||| |||||||||||||||||  | || ||||| |||| || ||||||||||||    
T  5471543 aaaaagtagaatacacaatttttaagataatattttcttttataattctttaaaaaatgcctcgg-gacatcggttaacatttccc 5471627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 41868830 - 41868887
Alignment:
Q  29 ttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattc 86  Q
    ||||| ||| |||||||||||||||||||||  || | ||||||||||||||||||||    
T  41868830 ttcaacttttaaaaagtaaaatacacaatttctaagataatatttccttttataattc 41868887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 5091850 - 5091780
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||| |||||||||||| |||||||||||||| |   ||  |||||||||||||||| ||||| ||||    
T  5091850 ttttcaactttcaaaaagtataatacacaattttcgaggtaagttttccttttataattccttaacaagtg 5091780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 14148326 - 14148383
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    |||||||||||| |||||||||||| ||| | ||||| || ||||||||||| |||||    
T  14148326 tttcaaaaagtagaatacacaatttccaagataatatgtctttttataattccttaac 14148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 19336838 - 19336906
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcgga 104  Q
    |||||||||||| ||||||||||||| || |||||| ||| ||||||||||  ||||| |||||| ||||    
T  19336838 tttcaaaaagtagaatacacaatttttaagaaaata-ttcattttataatttcttaacaagtgtcccgga 19336906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 32310887 - 32310916
Alignment:
Q  70 atttccttttataattctttaaccagtgtc 99  Q
    ||||||||||||||||||||||||||||||    
T  32310887 atttccttttataattctttaaccagtgtc 32310916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 35626466 - 35626531
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    |||||||||||||||||  |||||| ||||||| |||  | | ||||||||||||||||| |||||    
T  35626466 ttttcaaatttcaaaaaccaaaatatacaatttccaactatacatttccttttataattccttaac 35626531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 20175264 - 20175228
Alignment:
Q  87 tttaaccagtgtctcggagacaccgattaacatttcc 123  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  20175264 tttaaccagtgtctcggagacaccggttagcatttcc 20175228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 185489 - 185571
Alignment:
Q  22 atcacttttcaaattt-caaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcgg 103  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  185489 atcacttttctaattttcaaaaagtagaatacacaattttcaatacaatattttcttttataattccttaaccagtgtctcgg 185571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 31955720 - 31955638
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacac 109  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||| || ||||||    
T  31955720 ttttcaagtttcaaaaagtaaaatacacaattttcaaataaatatttccttttataatttattaaccagtgtcccgcagacac 31955638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 34629031 - 34629126
Alignment:
Q  3 caaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||| || |||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||| |||| |||||||| ||||||||| ||||    
T  34629031 caaagtaaacattaaaagcaacactttttcaaatttcaaaaagtaaaatacactattttcaagaaaacatttacttttatatttctttaactagtg 34629126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 21608202 - 21608278
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcgg 103  Q
    ||||||||||| |||||||||||||||||||||| || |||| |||| |||||||||||  ||||||||||||||||    
T  21608202 ttttcaaattttaaaaagtaaaatacacaattttgaagaaaaaattttcttttataatttcttaaccagtgtctcgg 21608278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 31330578 - 31330516
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||||||| |||||||||||||||| | || ||||||| |||||||||||||| |||||    
T  31330578 tttcaaaaagtagaatacacaattttcaagacaaaatttcctcttataattctttaatcagtg 31330516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 2656480 - 2656424
Alignment:
Q  43 agtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    |||| |||||||||||| ||||| ||||||| |||||||||||| ||||||||||||    
T  2656480 agtagaatacacaatttccaatataatattttcttttataattccttaaccagtgtc 2656424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 30533711 - 30533768
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataat 84  Q
    ||||||| |||||||||||| ||||||||||||||||   || |||||||||||||||    
T  30533711 ttttcaactttcaaaaagtagaatacacaattttcaagttaacatttccttttataat 30533768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 29608504 - 29608421
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 122  Q
    ||||| || |||||| ||||| ||| || |||||||||||| |||||  ||||| ||||||| ||||||| ||||||| |||||    
T  29608504 aaaaaatagaatacataatttccaaaaatatatttccttttttaatttcttaacaagtgtctaggagacaacgattaaaatttc 29608421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 2667135 - 2667085
Alignment:
Q  43 agtaaaatacacaattttcaataaaatatttccttttataattctttaacc 93  Q
    |||| |||||||||||| ||||| ||||||| |||||||||||| ||||||    
T  2667135 agtagaatacacaatttccaatacaatattttcttttataattccttaacc 2667085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2865165 - 2865104
Alignment:
Q  1 agcaaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttc 61  Q
    ||||||||||| ||||||| || || |||| ||| ||||||||||||||||||| |||||||    
T  2865165 agcaaagtcaacattaaaatcaacattttttcaagtttcaaaaagtaaaatacataattttc 2865104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 6030957 - 6031001
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataa 83  Q
    |||||| | ||||||||||||| || |||||||||||||||||||    
T  6030957 aaaaagaataatacacaatttttaagaaaatatttccttttataa 6031001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 47089277 - 47089207
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  47089277 ttttcaagtttcaaaaagtaaaatacacaattttcaagaaaacatttccttttataattccttaaccagtg 47089207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 38609163 - 38609093
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||  |||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||||||    
T  38609163 ttttcaagcttcaaaaagtaaaatacacaattttcgagaaaacatttccttttataattccttaaccagtg 38609093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 2905568 - 2905509
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattc 86  Q
    ||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||    
T  2905568 ttttcaaatttcaaaaagtaaaatatacaattttcgagaaaacatttccttttataattc 2905509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 45983252 - 45983155
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac-cagtgtctcggagacaccgattaacatttccc 124  Q
    ||||||||||||||||||||||||||||||||| | | |||| ||||| ||||||||||| |||||   ||||| ||| ||||| ||||||||||||||    
T  45983252 ttttcaaatttcaaaaagtaaaatacacaatttgcgaaaaaacatttcattttataattcattaacggtgtgtcacgg-gacactgattaacatttccc 45983155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 47750534 - 47750464
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||| ||||||||||||||||||||||||||  | ||||||||||| |||||||||| ||||| ||||    
T  47750534 ttttcaagtttcaaaaagtaaaatacacaatttttgagaaaatatttccctttataattccttaactagtg 47750464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 36860354 - 36860290
Alignment:
Q  33 aatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||||||||| |||||||||||| ||||| |||||||| ||||||||||  ||||||||||    
T  36860354 aatttcaaaaagtagaatacacaatttccaatacaatatttctttttataatttcttaaccagtg 36860290  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 48743523 - 48743459
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    ||||||||||| |||| |||||||| ||||| |||||||||||||||||||  ||||||||||||    
T  48743523 tttcaaaaagtgaaatgcacaatttccaatacaatatttccttttataatttcttaaccagtgtc 48743459  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 17405815 - 17405873
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    ||||||||||||||||| ||||||| ||||||||  | |||||||||||||||||||||    
T  17405815 ttttcaaatttcaaaaaataaaatatacaatttttgaaaaaatatttccttttataatt 17405873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 28777402 - 28777344
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    ||||||| ||||||||||||||||||||||||||  | |||| ||||||||||||||||    
T  28777402 ttttcaagtttcaaaaagtaaaatacacaatttttgagaaaacatttccttttataatt 28777344  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 36619938 - 36619996
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||||    
T  36619938 aaaaagtaaaatacacaatttccaatacaatatttccttttataatcccttaacaagtg 36619996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 49081312 - 49081370
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||| || |||||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  49081312 aaaaaatagaatacacaattttcaaaaaaatatttccttttctaattctttaatcagtg 49081370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 26194605 - 26194508
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    ||||||| ||| |||||||  |||||||||||| ||| | |||||||| ||||||||||| ||||| |||| | |||||||||   ||||||||||||    
T  26194605 ttttcaatttttaaaaagttgaatacacaatttacaagataatatttcattttataattccttaacaagtgccccggagacacttcttaacatttccc 26194508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 49242474 - 49242410
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    ||||||||||||||||||||||||||||||||| | | |||||| ||| ||||||||||| |||||    
T  49242474 ttttcaaatttcaaaaagtaaaatacacaatttccgagaaaata-ttcattttataattccttaac 49242410  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 1955344 - 1955284
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    |||||||  |||| ||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  1955344 aaaaagtcgaatatacaattttcaatacaatattttcttttataattctttaaccaatgtc 1955284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 20922758 - 20922663
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcgga-gacaccgattaacatttc 122  Q
    ||||||| |||| |||||||||||| ||||||| ||| |||| |||| |||||||||||| ||||| |||| ||| || | ||||||||||||||||    
T  20922758 ttttcaagtttcgaaaagtaaaatatacaatttccaagaaaacattttcttttataattccttaactagtg-ctccgagggcaccgattaacatttc 20922663  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 32056321 - 32056381
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    ||||||||||||||||||||||||| | || ||||||||||||||||  ||||||| ||||    
T  32056321 aaaaagtaaaatacacaattttcaagacaaaatttccttttataatttcttaaccaatgtc 32056381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 41454967 - 41455026
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacca 94  Q
    ||||||||| ||||||||||||||||||| | || ||||| ||| |||||||||||||||    
T  41454967 tttcaaaaaataaaatacacaattttcaagataaaatttcttttcataattctttaacca 41455026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 7633201 - 7633274
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 122  Q
    |||||||||||||||| |||  ||||||||||||||||| |||||||||  | ||||| ||||| ||||||||||    
T  7633201 aatacacaattttcaaaaaatcatttccttttataattccttaaccagtcccccggag-caccggttaacatttc 7633274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 34015782 - 34015720
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||||||| |||| ||||||| ||| | || |||| |||||||||||||||||||||||    
T  34015782 tttcaaaaagtagaatatacaatttccaaaacaaaattttcttttataattctttaaccagtg 34015720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 12763432 - 12763493
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagt 96  Q
    |||||||||||| |||||||| ||| ||| | ||||||| |||||||||||| |||||||||    
T  12763432 tttcaaaaagtagaatacacagtttccaaaacaatattttcttttataattccttaaccagt 12763493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 19466089 - 19466032
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    |||||||| |||||||||||||||| ||| |||||||||| ||||||| ||| |||||    
T  19466089 tttcaaaaggtaaaatacacaatttccaaaaaaatatttcattttatatttccttaac 19466032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 21139314 - 21139387
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtct 100  Q
    ||||||| |||||||||||| |||||| ||||||||| | ||| ||| |||||||||||  ||||| |||||||    
T  21139314 ttttcaactttcaaaaagtagaatacataattttcaagataatgttttcttttataatttattaacaagtgtct 21139387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 47742801 - 47742884
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||| ||| ||||||||| || ||| | |||||||||||||||||||| ||||||| |||| ||| || |||||||||||||||||    
T  47742801 aaaatgtataatacacaaattccaagataatatttccttttataattccttaaccaatgtc-cgg-gataccgattaacatttccc 47742884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 33033263 - 33033337
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||||||| ||| ||||||||| ||||||||||||  ||| |||||||| |||| ||||| ||||||||||||    
T  33033263 aatacacaatttccaagaaaatattttcttttataattc-ataatcagtgtcttggag-caccggttaacatttccc 33033337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 42274335 - 42274430
Alignment:
Q  28 tttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||| ||| ||||| || || ||||||||||||| ||||||||||||||| |||||  ||||||| || | || |||||||  ||||||||||||    
T  42274335 tttcaacttttaaaaaatagaacacacaattttcaaaaaaatatttccttttctaattacttaaccaatg-cccgaagacacctgttaacatttccc 42274430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 42915832 - 42915748
Alignment:
Q  3 caaagtcaatattaaaagcatcacttttcaaa-tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattc 86  Q
    ||||||||  |||||||||| |||||||  || ||| ||||||||||||||||||||| ||| |||| |||| ||||| ||||||    
T  42915832 caaagtcagcattaaaagcaacacttttttaagttttaaaaagtaaaatacacaatttccaaaaaaacattttcttttgtaattc 42915748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 6167758 - 6167703
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttata 82  Q
    |||||||  ||||||||||||||| |||||||| ||| ||||| ||||||||||||    
T  6167758 ttttcaacattcaaaaagtaaaatgcacaatttccaagaaaatgtttccttttata 6167703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 50498929 - 50498874
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacca 94  Q
    ||||| ||||||||||||||| ||| |||||||||  |||| ||||||||||||||    
T  50498929 aaaaaataaaatacacaatttccaaaaaaatattttattttttaattctttaacca 50498874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 53374992 - 53375047
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttata 82  Q
    ||||||| ||| |||||||| |||||||||||| ||| | ||||||||||||||||    
T  53374992 ttttcaacttttaaaaagtagaatacacaatttccaagagaatatttccttttata 53375047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 37588817 - 37588909
Alignment:
Q  4 aaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||| || |||||||||| ||||||| ||||||| ||||| || ||| ||||||||||| |||| |||||| ||||||||||| ||||| ||||    
T  37588817 aaagttaacattaaaagcaacactttttcaaattttaaaaa-tataattcacaattttca-taaattatttctttttataattccttaactagtg 37588909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 1051833 - 1051784
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||||||||||||  ||||||||||||| ||||||| |||| |||||    
T  1051833 aatacacaattttcaaggaaatatttcctttaataattccttaatcagtg 1051784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 4826538 - 4826493
Alignment:
Q  40 aaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    |||||||||||||| |||||  || |||||||||||||||||||||    
T  4826538 aaaagtaaaatacataatttctaagaaaatatttccttttataatt 4826493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 31314390 - 31314354
Alignment:
Q  88 ttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  31314390 ttaaccagtatctcgaagacaccgattaacatttccc 31314354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 45739508 - 45739591
Alignment:
Q  41 aaagtaaaatacacaattttc--aataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 122  Q
    ||||||||||| |||||||||  || |||| ||||||||| ||||||  ||||| |||||| |||  |||||| ||||||||||    
T  45739508 aaagtaaaatatacaattttcgaaaaaaaacatttcctttaataatttcttaactagtgtcacgggaacaccggttaacatttc 45739591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 1017 - 928
Alignment:
Q  3 caaagtcaatattaaaagcatca-cttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    |||| |||| |||||||||| || |||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  1017 caaaatcaacattaaaagcaacatcttttcaagtttgaaaaagtaaaatacataattttcaagaaaatatttccttttataattctttaa 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 42888064 - 42887975
Alignment:
Q  3 caaagtcaatattaaaagcatca-cttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    |||| |||| |||||||||| || |||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  42888064 caaaatcaacattaaaagcaacatcttttcaagtttgaaaaagtaaaatacataattttcaagaaaatatttccttttataattctttaa 42887975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 43638397 - 43638456
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacca 94  Q
    |||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||    
T  43638397 tttcaaaaagtagaatacacaattttcaagacaatatttccttttataattccttaacca 43638456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 52012459 - 52012538
Alignment:
Q  13 attaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||||| | | |||| ||||||||||||||||| |||||    
T  52012459 attaaaaccatcactttttcaagtttcaaaaagtaaaatacacaatttccga-aaaacatttccttttataattcgttaac 52012538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 4612505 - 4612425
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttcctttta---taattctttaaccagtgtctcgga 104  Q
    ||||||| ||||||||||||||||| | ||||||||| ||||||||| ||| ||   |||||||||||| |||||||||||    
T  4612505 ttttcaagtttcaaaaagtaaaatagataattttcaagaaaatattttcttctatagtaattctttaacgagtgtctcgga 4612425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 31647725 - 31647628
Alignment:
Q  3 caaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    ||||||||| ||||||| ||  ||| || ||| ||||||||||||||||||| ||||||| | |||| |||| |||||||||||| ||||| ||||||    
T  31647725 caaagtcaacattaaaaacaatactcttacaagtttcaaaaagtaaaatacagaattttcgaaaaaacattttcttttataattccttaactagtgtc 31647628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 37694991 - 37695066
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttc--aataaaatatttccttttataattctttaaccagtgtct 100  Q
    ||||||||||||||||||||||||| | |||||||  || |||||||||||||||| | ||| ||||| |||||||    
T  37694991 ttttcaaatttcaaaaagtaaaataaataattttcgaaaaaaaatatttccttttacatttccttaactagtgtct 37695066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 14171873 - 14171826
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttata 82  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  14171873 tttcaaaaagtaaaatacacaattttcaagacaatattttcttttata 14171826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 27919167 - 27919214
Alignment:
Q  50 tacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||| ||||||||| |||||||||||||||||||||||||||| ||||    
T  27919167 tacataattttcaagaaaatatttccttttataattctttaacaagtg 27919214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 6395513 - 6395464
Alignment:
Q  45 taaaatacacaattttcaataaaatatttccttttataattctttaacca 94  Q
    ||||||||||||||||||| ||||||||| |||| ||||||| |||||||    
T  6395513 taaaatacacaattttcaaaaaaatattttctttaataattccttaacca 6395464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 964008 - 963948
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    |||||||| |||||||||||| ||| | |||||||||| ||||||||| ||||| ||||||    
T  964008 aaaaagtagaatacacaatttccaagacaatatttcctattataattccttaacaagtgtc 963948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 49372562 - 49372617
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    ||||||||| |||||||| |||||||||| ||||||||| |||||||||||| ||||    
T  49372562 tttcaaaaaataaaatacccaattttcaa-aaaatattttcttttataattccttaa 49372617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 42629328 - 42629398
Alignment:
Q  13 attaaaagcatcacttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataat 84  Q
    |||||||| | || ||||||| ||| |||||||||  |||||||||||||| |||||| |||||||||||||    
T  42629328 attaaaagtaacatttttcaagttttaaaaagtaacctacacaattttcaaaaaaata-ttccttttataat 42629398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 20997758 - 20997720
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatattt 73  Q
    |||||||||||||||||||||||||| || |||||||||    
T  20997758 tttcaaaaagtaaaatacacaatttttaaaaaaatattt 20997720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 42678358 - 42678269
Alignment:
Q  3 caaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    ||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||| ||| | |||||||||||||    
T  42678358 caaagtcaacattaaaagcaacactttttcaaattttaaaaagtaaaatacacaattttcgaaaaaatatgtccatatataattctttaa 42678269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 55142339 - 55142436
Alignment:
Q  25 acttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 122  Q
    |||||| |||||||||||  || |||||||||||| ||| ||||||||| |||||||||||||||||||||| |  ||| ||||||| ||||||||||    
T  55142339 actttttaaatttcaaaacatagaatacacaatttccaaaaaaatattttcttttataattctttaaccagtattccggggacaccggttaacatttc 55142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 31064569 - 31064641
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||| ||||||    
T  31064569 ttttcaagtttcaaaaagtaaaatacacaattttcaaaaaaatgtttctttttataattccttaactagtgtc 31064641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 30917085 - 30917144
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattc 86  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||    
T  30917085 ttttcaaatttcaaaaagtaaaatacacaatttttaaaaaaatatttcttttcataattc 30917144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 50662484 - 50662571
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 122  Q
    |||||||||||| |||| | ||||| ||||| |||||||  ||||||||||| |||||||||| ||| ||||||||| ||||||||||    
T  50662484 tttcaaaaagtagaatagaaaatttccaatataatattttattttataattccttaaccagtgcctccgagacaccggttaacatttc 50662571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 40892852 - 40892798
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattcttt 89  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  40892852 tttcaaaaagtagaatacacaatttccaagaaaatatttccttttataattcttt 40892798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 53653168 - 53653110
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||| |||||||||||||||||| || |||| |||||||||||||||||||||||    
T  53653168 aaaaagtagaatacacaattttcaatataaaattttcttttataattctttaaccagtg 53653110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 38833014 - 38832955
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacca 94  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||||||||  |||||||    
T  38833014 tttcaaaaagtagaatacataattttcaatacaatatttccttttataatttcttaacca 38832955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 31316064 - 31316006
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||||||||||||||||    
T  31316064 ttttcaaattttaaaaaataaagtacacaattttcataaaaatatttccttttataatt 31316006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 17947445 - 17947360
Alignment:
Q  13 attaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||||||||||||| ||| ||||||| | ||||||||||||||| | | |||| ||||||||||||| ||| ||||| ||||    
T  17947445 attaaaagcatcactttttcaagtttcaaacattaaaatacacaatttactaaaaaacatttccttttatatttccttaactagtg 17947360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 27659755 - 27659820
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    ||||||| ||||||||| || |||||||||||||||| ||| |||||| ||||||||||| |||||    
T  27659755 ttttcaactttcaaaaaatagaatacacaattttcaaaaaattatttcattttataattcattaac 27659820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 53099576 - 53099647
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    ||||||| ||||||||||||| || |||||||||||| |||| | ||  ||||||||||||||||||||||||    
T  53099576 ttttcaagtttcaaaaagtaacattcacaattttcaagaaaa-agttatttttataattctttaaccagtgtc 53099647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 48290294 - 48290226
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttc---aataaaatatttccttttataattctttaac 92  Q
    ||||||| ||||||||||||||||||||||||| |   || |||||||||| ||||||||||| |||||    
T  48290294 ttttcaagtttcaaaaagtaaaatacacaatttccaaaaaaaaaatatttctttttataattccttaac 48290226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 38576383 - 38576318
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    ||||||||||||||||||||||||| | ||||||||| || | ||||  |||||||||| ||||||    
T  38576383 ttttcaaatttcaaaaagtaaaatatataattttcaagaatacatttttttttataattttttaac 38576318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 41898238 - 41898181
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    ||||||||||||||||||||| ||||||| || | ||||| ||||||||||| |||||    
T  41898238 tttcaaaaagtaaaatacacatttttcaaaaatacatttcattttataattccttaac 41898181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 9099181 - 9099237
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    |||||||||||  ||||||| |||| ||||| |||||||||||||||||||| ||||    
T  9099181 tttcaaaaagttgaatacacgatttccaatacaatatttccttttataattccttaa 9099237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 23160664 - 23160728
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    ||||||| ||||||||||||||||| ||||||| | | || |||||| |||||||||||| ||||    
T  23160664 ttttcaagtttcaaaaagtaaaatatacaatttccgagaacatattttcttttataattccttaa 23160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 37677418 - 37677367
Alignment:
Q  28 tttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttcctttt 79  Q
    |||||| ||| ||||| || |||||||||||||||| |||||||||||||||    
T  37677418 tttcaacttttaaaaaatagaatacacaattttcaagaaaatatttcctttt 37677367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 28233521 - 28233463
Alignment:
Q  33 aatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    ||||| |||||||| |||| ||||||||||| | | |||||||||||||||||| ||||    
T  28233521 aattttaaaaagtagaataaacaattttcaagatagtatttccttttataattcgttaa 28233463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 32497837 - 32497887
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    |||||||||||| |||||||||||||| | | ||||||| |||||||||||    
T  32497837 tttcaaaaagtataatacacaattttcgagataatatttacttttataatt 32497887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 34664329 - 34664271
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    ||||||| ||| ||||| || |||||| ||||| |||||||||||||||| ||||||||    
T  34664329 ttttcaacttttaaaaaatagaatacataatttccaataaaatatttcctattataatt 34664271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 23089309 - 23089393
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||| ||||||||||||  || | || |||| ||||||||||||||||| ||||| ||||||| | ||| ||||| ||||||    
T  23089309 aaaaagtataatacacaatttctaaaacaaaattttcttttataattctttaatcagtg-ctcggaggctccggttaacctttccc 23089393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 46543536 - 46543581
Alignment:
Q  33 aatttcaaaaagtaaaatacacaattttc-aataaaatatttcctt 77  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||    
T  46543536 aatttcaaaaagtaaaatacacaattttcgaaaaaaacatttcctt 46543581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 51490217 - 51490274
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    |||||||| ||| |||||| ||||||||| | ||||||| |||||||||||| |||||    
T  51490217 tttcaaaaggtataatacaaaattttcaagagaatattttcttttataattccttaac 51490274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 277600 - 277548
Alignment:
Q  30 tcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttata 82  Q
    |||| ||||||||| || ||| |||||||||||| | ||||||||||||||||    
T  277600 tcaactttcaaaaactataatgcacaattttcaaaagaatatttccttttata 277548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 44362348 - 44362259
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    ||||||||| || |||||||||||||||||| |||||||| ||||||||||| ||||||| || | ||||||||  | ||||||||||||    
T  44362348 tttcaaaaaatagaatacacaattttcaatacaatatttctttttataattccttaaccactgccccggagacattggttaacatttccc 44362259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 40891964 - 40891894
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||||| |||||||||||| ||||| ||||    
T  40891964 ttttcaagtttcaaaaaataaaatacacaattatcaaaaaaatattttcttttataattccttaactagtg 40891894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 18087249 - 18087334
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 122  Q
    |||||||||||| |||||||||||||||| | ||||||||||||||| |||| ||||| |||| | ||| ||||| ||||||||||||    
T  18087249 tttcaaaaagtagaatacacaattttcaagagaatatttccttttat-attccttaacaagtgccccgg-gacactgattaacatttc 18087334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 26491508 - 26491449
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgt 98  Q
    |||||||| || ||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26491508 aaaaagtagaacacacaatttccaatacaatatttccttttataattctttaactagtgt 26491449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 7662326 - 7662402
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||||||| ||| |||||||||||||| ||||||  |||||||||  ||| ||| ||||| ||||||||||||    
T  7662326 aatacacaatttccaaaaaaatatttcctttaataatttcttaaccagtacctcagaggcaccggttaacatttccc 7662402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 8457549 - 8457645
Alignment:
Q  28 tttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||| ||| ||||| || |||||||||||| ||| ||||||||||||||| |||||| |||| ||||| | ||| | ||| | ||||||||||||    
T  8457549 tttcaacttttaaaaaatagaatacacaatttccaagaaaatatttccttttctaattccttaatcagtggcccgggggcactggttaacatttccc 8457645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 30157742 - 30157794
Alignment:
Q  28 tttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttcctttta 80  Q
    |||||| |||||||||||| |||||||||||| ||| ||||||||||||||||    
T  30157742 tttcaactttcaaaaagtagaatacacaatttccaagaaaatatttcctttta 30157794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 6599597 - 6599502
Alignment:
Q  3 caaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||| || |||||||||| || |||| ||| ||||||||||||||| | ||||||| ||| |||||||||  ||||||||||| ||||| ||||    
T  6599597 caaagttaacattaaaagcaacattttttcaagtttcaaaaagtaaaacagacaatttacaagaaaatatttatttttataattccttaactagtg 6599502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 6675050 - 6674955
Alignment:
Q  3 caaagtcaatattaaaagcatcactttt-caaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||| || |||||||||| || |||| ||| ||||||||||||||| | ||||||| ||| |||||||||  ||||||||||| ||||| ||||    
T  6675050 caaagttaacattaaaagcaacattttttcaagtttcaaaaagtaaaacagacaatttacaagaaaatatttatttttataattccttaactagtg 6674955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 13015430 - 13015480
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataatt 85  Q
    |||||||||||| |||||||||||| ||||| ||||||| |||||||||||    
T  13015430 tttcaaaaagtagaatacacaatttgcaatacaatatttacttttataatt 13015480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 15021364 - 15021434
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||| |||||||| |||||||||||||||||| | |||| |||| || |||||||| |||||| ||||    
T  15021364 ttttcaagtttcaaaatgtaaaatacacaattttcgagaaaacattttctcttataattttttaactagtg 15021434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 42563250 - 42563188
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||||| || ||| || ||||||||||| |||||||||||||||||||| ||||| ||||    
T  42563250 tttcaaaaaatagaatgcagaattttcaatacaatatttccttttataattccttaactagtg 42563188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 27924540 - 27924483
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    |||||||||||| |||||| ||||||||| | ||||||| ||||| ||||||||||||    
T  27924540 tttcaaaaagtagaatacataattttcaagataatattttcttttctaattctttaac 27924483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 24184588 - 24184647
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacca 94  Q
    |||||||||| | |||||||||||| ||| | || |||| ||||||||||||||||||||    
T  24184588 tttcaaaaagcagaatacacaatttccaaaacaaaattttcttttataattctttaacca 24184647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 30157836 - 30157899
Alignment:
Q  34 atttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||| ||||  |||| ||||||||||| |||||||||||||| ||||||| ||||| ||||    
T  30157836 atttcaataagttgaatatacaattttcaagaaaatatttcctttaataattcattaacaagtg 30157899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 31330216 - 31330115
Alignment:
Q  4 aaagtcaatattaaaagcatcact-tttcaaatttcaaaaagtaaaa---tacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    |||||||  |||||||||| |||| ||| || |||||||||||||||   |||||||||| | | |||| |||| |||||||||||| ||||| ||||||    
T  31330216 aaagtcagcattaaaagcaacactattttaagtttcaaaaagtaaaaaaatacacaatttccgagaaaacattttcttttataattccttaactagtgtc 31330117  T
Q  100 tc 101  Q
    ||    
T  31330116 tc 31330115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 33986916 - 33986869
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttata 82  Q
    |||||||||||||||||||||||||| || | ||||||| ||||||||    
T  33986916 tttcaaaaagtaaaatacacaattttaaagagaatattttcttttata 33986869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 45114728 - 45114681
Alignment:
Q  50 tacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||||||||| |||| ||||| ||||||||||||||||| ||||    
T  45114728 tacacaattttcaaaaaaaaatttcattttataattctttaacaagtg 45114681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 468137 - 468194
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    |||||||||||| |||| ||||||||||| | |||||||  |||||||||| ||||||    
T  468137 tttcaaaaagtagaatagacaattttcaaaacaatattttattttataattttttaac 468194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 6509984 - 6510037
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    ||||||||||||||||| |||| || | |||||||| ||||||||||| |||||    
T  6509984 aaaaagtaaaatacacattttttaagacaatatttcattttataattccttaac 6510037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 23722305 - 23722248
Alignment:
Q  67 aatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    ||||||||||||| |||||| |||||||||| | ||| | ||||| ||||||||||||    
T  23722305 aatatttccttttctaattccttaaccagtgccccgggggcaccggttaacatttccc 23722248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 16938952 - 16938900
Alignment:
Q  39 aaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    |||||||| |||||||||||||||| | | |||||||| ||||||||| ||||    
T  16938952 aaaaagtagaatacacaattttcaagacactatttcctcttataattccttaa 16938900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 24261401 - 24261365
Alignment:
Q  88 ttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  24261401 ttaaccagtgcctcagagacaccgattaacatttccc 24261365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 9047154 - 9047066
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttcc 123  Q
    |||||||||||| ||| |||||||||||||| || |||||||||||| |||| |||||||||||| ||| ||||  | |||||||||||    
T  9047154 tttcaaaaagtagaatccacaattttcaatacaaaatttccttttatgattccttaaccagtgtcccggggacattggttaacatttcc 9047066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 26453891 - 26453961
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||||| |||||||| | |||||||||||||||| |||||| ||||||||||||||||| ||||| ||||    
T  26453891 ttttcaagtttcaaaatgcaaaatacacaattttcgataaaacatttccttttataattccttaactagtg 26453961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 43496264 - 43496204
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagt 96  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||    
T  43496264 tttcaaaaagtaaaatatacaattttcaaaaaaatattt-ctttcataattctttaaccagt 43496204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 6221091 - 6221163
Alignment:
Q  25 acttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||| || |||||||||||| |||| ||||||| ||| | ||||| |||||||||||||| ||||||||||    
T  6221091 actttttaactttcaaaaagtagaatatacaatttccaagacaatatctccttttataattccttaaccagtg 6221163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 24495335 - 24495391
Alignment:
Q  50 tacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggaga 106  Q
    |||||||||||||| | ||||||| |||||||||||||||||| |||| ||||||||    
T  24495335 tacacaattttcaagataatattttcttttataattctttaacaagtgcctcggaga 24495391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 30898093 - 30898164
Alignment:
Q  26 cttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    ||||| || |||||||||||| |||  ||| ||||||| |||||||||||||||||||||| ||||| ||||    
T  30898093 ctttttaactttcaaaaagtagaatgtacagttttcaagaaaatatttccttttataattccttaacaagtg 30898164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 45879171 - 45879113
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacc 93  Q
    |||||||||||| |||||||||||| ||| | || ||||||||||||||||| ||||||    
T  45879171 tttcaaaaagtagaatacacaatttccaagacaaaatttccttttataattccttaacc 45879113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 8919429 - 8919379
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtgt 98  Q
    |||| ||||||||||| |||  ||||||||||||||||| |||||||||||    
T  8919429 aatatacaattttcaaaaaatcatttccttttataattccttaaccagtgt 8919379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 25790122 - 25790218
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    ||||||| ||| ||||| || | || |||||||  || ||||||||| |||||||||||  |||| ||||||||||| | ||||| ||||||||||||    
T  25790122 ttttcaactttaaaaaattagagtatacaatttctaagaaaatattttcttttataatttcttaatcagtgtctcgg-ggcaccggttaacatttccc 25790218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 30198384 - 30198319
Alignment:
Q  28 tttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaacc 93  Q
    |||||| ||| ||||| || ||||||||||||  || ||||||||||||||| |||||| ||||||    
T  30198384 tttcaacttttaaaaaatagaatacacaatttctaagaaaatatttccttttctaattccttaacc 30198319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 34224317 - 34224382
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    ||||||| ||| |||||||| |||| ||||||||||| | |||| |||| |||||||||| |||||    
T  34224317 ttttcaactttgaaaaagtagaatatacaattttcaagagaataattccatttataattccttaac 34224382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 46338460 - 46338427
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaatttt 60  Q
    |||||||||||||||||||||| |||||||||||    
T  46338460 ttttcaaatttcaaaaagtaaagtacacaatttt 46338427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 40417692 - 40417756
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtgtc 99  Q
    ||||||||| || || ||||||||| ||| | ||||||| |||||||||||| ||||| ||||||    
T  40417692 tttcaaaaaatagaaaacacaatttccaaaacaatattttcttttataattccttaacaagtgtc 40417756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 4600 - 4538
Alignment:
Q  35 tttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaaccagtg 97  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||| ||||||||| |||||    
T  4600 tttcaaaaagtggaatacacaattttcaatacaatatttcattttattattctttaatcagtg 4538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 7006 - 6930
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||||||||||| |||  ||||||||||| ||||| ||||| |||||| ||||  ||||| ||||||||||||    
T  7006 aatacacaattttcaagaaatcatttccttttacaattccttaactagtgtcccggaatcaccggttaacatttccc 6930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 7128 - 7053
Alignment:
Q  48 aatacacaattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 124  Q
    |||||||||||||||| ||| |||||||||||| | ||| ||||| ||| || ||| ||||||| ||||||| ||||    
T  7128 aatacacaattttcaagaaattatttccttttacatttccttaactagtttcccgg-gacaccggttaacatatccc 7053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 2193 - 2257
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaac 92  Q
    |||| ||||||| |||||||||||||||||||||| | |||| |||| |||||||||||| |||||    
T  2193 ttttaaaatttctaaaagtaaaatacacaattttcgagaaaa-attttcttttataattccttaac 2257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 18890 - 18826
Alignment:
Q  27 ttttcaaatttcaaaaagtaaaatacacaattttcaataaaatatttccttttataattctttaa 91  Q
    ||||||| |||||||||||| |||||| ||||||||| | |||||| || |||||| ||| ||||    
T  18890 ttttcaactttcaaaaagtagaatacataattttcaagacaatattcccgtttatatttccttaa 18826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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