View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21462_low_26 (Length: 244)

Name: NF21462_low_26
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21462_low_26
NF21462_low_26
[»] chr2 (9 HSPs)
chr2 (19-219)||(27072327-27072527)
chr2 (19-219)||(20471141-20471341)
chr2 (57-219)||(34071266-34071428)
chr2 (57-218)||(31426452-31426613)
chr2 (61-209)||(21084909-21085057)
chr2 (57-109)||(7861606-7861654)
chr2 (62-109)||(33845703-33845750)
chr2 (75-109)||(17102783-17102817)
chr2 (75-109)||(32019517-32019551)
[»] chr5 (12 HSPs)
chr5 (19-219)||(36961876-36962076)
chr5 (19-219)||(42765244-42765444)
chr5 (57-219)||(13065372-13065534)
chr5 (61-219)||(20587644-20587802)
chr5 (57-209)||(19609067-19609219)
chr5 (57-219)||(8724713-8724875)
chr5 (61-218)||(20706123-20706280)
chr5 (57-206)||(11619086-11619235)
chr5 (62-109)||(21708484-21708531)
chr5 (60-105)||(13559983-13560028)
chr5 (139-206)||(31291777-31291844)
chr5 (57-106)||(18521788-18521837)
[»] chr1 (17 HSPs)
chr1 (21-215)||(22161718-22161912)
chr1 (57-214)||(4179974-4180131)
chr1 (68-219)||(27527309-27527460)
chr1 (57-219)||(25594727-25594889)
chr1 (53-219)||(38532607-38532773)
chr1 (36-198)||(11644731-11644893)
chr1 (57-206)||(26418702-26418851)
chr1 (57-206)||(32108429-32108578)
chr1 (21-206)||(21182605-21182788)
chr1 (57-206)||(11420275-11420424)
chr1 (61-106)||(29601015-29601060)
chr1 (63-110)||(3601274-3601321)
chr1 (75-109)||(17431184-17431218)
chr1 (75-109)||(44002267-44002301)
chr1 (20-109)||(8860176-8860265)
chr1 (63-103)||(20639601-20639641)
chr1 (62-106)||(28214300-28214344)
[»] chr4 (11 HSPs)
chr4 (53-219)||(15065904-15066070)
chr4 (57-219)||(25553252-25553414)
chr4 (21-210)||(17459367-17459557)
chr4 (57-206)||(47782994-47783143)
chr4 (57-206)||(4946607-4946756)
chr4 (57-206)||(13200843-13200992)
chr4 (57-187)||(40686964-40687094)
chr4 (153-209)||(13563661-13563717)
chr4 (62-109)||(46387911-46387958)
chr4 (57-99)||(13543165-13543207)
chr4 (19-101)||(13905888-13905970)
[»] chr6 (15 HSPs)
chr6 (57-209)||(21698713-21698865)
chr6 (19-215)||(11986180-11986376)
chr6 (21-214)||(1638176-1638368)
chr6 (57-209)||(30063577-30063729)
chr6 (57-210)||(1641208-1641360)
chr6 (21-206)||(10516121-10516306)
chr6 (57-206)||(15950803-15950952)
chr6 (57-100)||(7090441-7090484)
chr6 (57-109)||(13434356-13434408)
chr6 (83-215)||(33169536-33169668)
chr6 (57-94)||(30148023-30148060)
chr6 (75-109)||(17812263-17812297)
chr6 (75-109)||(33132290-33132324)
chr6 (57-109)||(6047326-6047377)
chr6 (62-110)||(19047097-19047145)
[»] chr7 (21 HSPs)
chr7 (21-218)||(5609412-5609609)
chr7 (57-209)||(5086598-5086750)
chr7 (19-218)||(27243955-27244153)
chr7 (53-209)||(21824376-21824532)
chr7 (57-219)||(13783874-13784036)
chr7 (19-218)||(33973049-33973249)
chr7 (57-206)||(29526831-29526980)
chr7 (57-206)||(664901-665053)
chr7 (57-206)||(7097334-7097483)
chr7 (57-215)||(21588056-21588214)
chr7 (57-106)||(19017042-19017091)
chr7 (153-209)||(9697284-9697340)
chr7 (55-112)||(39969998-39970055)
chr7 (139-206)||(15455879-15455946)
chr7 (120-219)||(19541874-19541973)
chr7 (75-109)||(6621369-6621403)
chr7 (57-99)||(9678221-9678263)
chr7 (75-109)||(15846923-15846957)
chr7 (75-109)||(15856133-15856167)
chr7 (75-109)||(36308020-36308054)
chr7 (57-94)||(15455808-15455845)
[»] scaffold0007 (1 HSPs)
scaffold0007 (53-219)||(234615-234781)
[»] chr3 (16 HSPs)
chr3 (57-218)||(9734353-9734514)
chr3 (57-219)||(8968288-8968450)
chr3 (57-219)||(2439493-2439655)
chr3 (57-219)||(2651709-2651871)
chr3 (21-219)||(14504021-14504219)
chr3 (57-219)||(15790046-15790208)
chr3 (21-219)||(26307342-26307540)
chr3 (57-209)||(34935092-34935244)
chr3 (57-206)||(32073521-32073670)
chr3 (89-206)||(46091971-46092088)
chr3 (57-106)||(29704653-29704702)
chr3 (62-102)||(48052386-48052426)
chr3 (57-104)||(13434480-13434527)
chr3 (60-109)||(10980975-10981024)
chr3 (62-111)||(37796615-37796664)
chr3 (62-110)||(38998917-38998965)
[»] scaffold0114 (1 HSPs)
scaffold0114 (57-209)||(11444-11596)
[»] chr8 (11 HSPs)
chr8 (52-209)||(28161868-28162025)
chr8 (57-209)||(25732251-25732403)
chr8 (57-206)||(7995188-7995337)
chr8 (19-103)||(25133137-25133221)
chr8 (62-106)||(39533709-39533753)
chr8 (19-106)||(3989487-3989574)
chr8 (62-199)||(12784017-12784155)
chr8 (130-219)||(22974832-22974922)
chr8 (75-109)||(14848428-14848462)
chr8 (162-206)||(3989632-3989676)
chr8 (57-105)||(12247058-12247106)
[»] scaffold1689 (1 HSPs)
scaffold1689 (57-209)||(916-1068)
[»] scaffold0251 (1 HSPs)
scaffold0251 (57-219)||(2138-2300)
[»] scaffold0445 (1 HSPs)
scaffold0445 (53-209)||(13933-14091)
[»] scaffold0388 (1 HSPs)
scaffold0388 (27-194)||(14381-14548)
[»] scaffold0071 (1 HSPs)
scaffold0071 (57-206)||(52679-52828)
[»] scaffold0009 (1 HSPs)
scaffold0009 (131-206)||(215522-215597)
[»] scaffold0068 (1 HSPs)
scaffold0068 (62-109)||(5379-5426)
[»] scaffold0044 (1 HSPs)
scaffold0044 (62-109)||(11031-11078)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 27072327 - 27072527
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 118  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27072327 ccattatggataagagtatccaatggtgtcacagttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 27072426  T
Q  119 caaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  27072427 caaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattagcgatctaatttttaatgaaatgatataattttctttctct 27072526  T
Q  219 c 219  Q
    |    
T  27072527 c 27072527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 20471141 - 20471341
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  20471141 ccattatggataatagtatccaattgtgtcacatttacttaacaaactctcatgtagagtttattaggaggcaagcaaatgaggttgctcatactctagc 20471240  T
Q  119 caaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
     |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    ||||||||||||||||||||||||| |||||| ||||    
T  20471241 taaggcagccgcatctagtactagcttccaggtctttgatgatattcctacatgtattagttctctaatctttaatgaaatgatataactttcttcctct 20471340  T
Q  219 c 219  Q
    |    
T  20471341 c 20471341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 34071428 - 34071266
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| || |||||||||| |||| | ||||||||||| |||||| |||| ||||||||| |||||||| |||||||| || | ||||    
T  34071428 ttaacaaactctcatgtcgaatttattaggaagcaaacgaatgaggttgcacacactttagctaaggcagccacatctagttctagcttctaggtctttg 34071329  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||||||||| ||||||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  34071328 atgatattccaacatgtattactgatctgatttttaatgaaatgatataatttactttctctc 34071266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 31426452 - 31426613
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||   | || | || |||||| |||||||||||||||||||| | ||||    
T  31426452 ttaacaaactctcatgtcgagtttattaagaggcaagcaaatgaggttgctcatgttttaactaaagcagccacatctagtactagcttccaggtgtttg 31426551  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
    ||||||||||  ||||||||||  ||||||| ||||||||||||||||||||| | ||||||    
T  31426552 atgatattccagcatgtattaccaatctaatttttaatgaaatgatataatttaccttctct 31426613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 21085057 - 21084909
Alignment:
Q  61 caaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttgatga 160  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||  || |||| ||||||||| |||||||||||| ||| ||| | ||||||||    
T  21085057 caaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacatgctttagctaaggcagccacatctagtactacctttcaggtctttgatga 21084958  T
Q  161 tattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    |||||| ||||||||||| ||||| || |||||||||||||||| ||||    
T  21084957 tattccaacatgtattaccgatctgatttttaatgaaatgatatgattt 21084909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 7861606 - 7861654
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    ||||||||||||||||||    ||||||||||||||||||||||| |||||||    
T  7861606 ttaacaaactctcatgtt----ttattaggaggcaagcaaatgagattgctca 7861654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 33845750 - 33845703
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||| |||||||||| |  |||||||||||||||||||||||||    
T  33845750 aaactctcgtgttgagtttgtacggaggcaagcaaatgaggttgctca 33845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 17102817 - 17102783
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  17102817 gagtttattaggagacaagcaaatgaggttgctca 17102783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 32019551 - 32019517
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  32019551 gagtttattaggagacaagcaaatgaggttgctca 32019517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 36962076 - 36961876
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 118  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36962076 ccattatggataagagtatccaatggtgtcacagttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 36961977  T
Q  119 caaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||||||||||||||||||    
T  36961976 caaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtatcggcgatctaatttttaatgaaatgatataattttctttctct 36961877  T
Q  219 c 219  Q
    |    
T  36961876 c 36961876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 42765244 - 42765444
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 118  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42765244 ccattatggataagagtatccaatggtgtcacaattacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 42765343  T
Q  119 caaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  42765344 caaggcagccacatctagtactagcttccagatctttgatgatattcctacatgtattagtgatctaatttttaatgaaatgatataattttctttctct 42765443  T
Q  219 c 219  Q
    |    
T  42765444 c 42765444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 13065534 - 13065372
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||||||| || |||||||| ||||||||| |||||||| |||||||||  || ||||    
T  13065534 ttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcacatactctagctaaggcagccacatctagttctagcttccgtatctttg 13065435  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||| || || ||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||    
T  13065434 atgaaatcccaacatgtattactgatttaatctttaatgaaatgatttaagtttctttctctc 13065372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 20587644 - 20587802
Alignment:
Q  61 caaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttgatga 160  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||| ||  || |||| ||||||||| |||||||||||| ||||||| | ||||||||    
T  20587644 caaactctcatgtcgagtttattaggaggtaagaaaatgaggttgcacatgctttagctaaggcagccacatctagtactaccttccaggtctttgatga 20587743  T
Q  161 tattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||||||||||||||||| ||||| || | |||||||||||||| ||||||||||||||    
T  20587744 tattcctacatgtattaccgatctgatttctaatgaaatgatatgattttctttctctc 20587802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 19609219 - 19609067
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||   | |||| || | |||| ||||||||| |||||||||| | ||||    
T  19609219 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttagctaaagtagccacatctagtattagcttccaggtgtttg 19609120  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||||||||  |||||||||| |||||||| |||||||||||||||||||||    
T  19609119 atgatattccagcatgtattaccgatctaatttttaatgaaatgatataattt 19609067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 8724713 - 8724875
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | |||||| ||||||||| |||||||| |||||||||  || ||||    
T  8724713 ttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcacataatctagctaaggcagccacatctagttctagcttccgtatctttg 8724812  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||| || || ||||||||||| ||  ||||||||||||||||||| ||| ||||||||||||    
T  8724813 atgaaatcccaacatgtattactgaattaatctttaatgaaatgatttaagtttctttctctc 8724875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 20706123 - 20706280
Alignment:
Q  61 caaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttgatga 160  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||  || |||| ||||||||| |||||||||||||||||||| | ||||||||    
T  20706123 caaactctcatgtcgagtttattagaaggcaagcaaatgaggttgcacatgctttagctaaggcagccacatctagtactagcttccaggtctttgatga 20706222  T
Q  161 tattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
    |||||  ||||||||||| |||||||| | |||| ||||| ||| |||| ||||||||    
T  20706223 tattctaacatgtattaccgatctaatttctaataaaatgctatgatttactttctct 20706280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 11619235 - 11619086
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||| ||  |  |||  ||||||||| |||||||||||||||||||  | ||||    
T  11619235 ttaacaaactctcatgtcgagtttattaggaggcaaacgaatgaggttgcgcatgcattagttaaggcagccacatctagtactagcttccatgtctttg 11619136  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||||||||| ||||||||| | ||| |||||||||||||||||||||||    
T  11619135 atgatattccaacatgtatttctgatttaatctttaatgaaatgatataa 11619086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 21708484 - 21708531
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  21708484 aaactctcatgttgagtttgtatggaggcaagcaaatgaggttgctca 21708531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 13559983 - 13560028
Alignment:
Q  60 acaaactctcatgttgagtttattaggaggcaagcaaatgaggttg 105  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||    
T  13559983 acaaactctaatgttgagtttattaggaggcaagtcaatgaggttg 13560028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 31291777 - 31291844
Alignment:
Q  139 ctagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||||||| | || |||||||| ||||| ||||||||||  ||| |||| ||||||||||||||||||    
T  31291777 ctagcttctatatctttgatgagattccaacatgtattaatgatttaatatttaatgaaatgatataa 31291844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 18521788 - 18521837
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 106  Q
    |||||||| ||||||||  |||||||||  ||||||||||||||||||||    
T  18521788 ttaacaaattctcatgtgaagtttattacaaggcaagcaaatgaggttgc 18521837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 22161718 - 22161912
Alignment:
Q  21 attatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcca 120  Q
    ||||||||||  ||||||||||| ||| | | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||| |    
T  22161718 attatggatagtagtatccaattttgtaatacttacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcataatctagcta 22161817  T
Q  121 aggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttc 215  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||    
T  22161818 aggcagccgcatctagtactagcctccagatctttgatgatattcctacatgtattagttctctaatctttaatgaaatgatatagttttctttc 22161912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 4179974 - 4180131
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||   | || | || |||||| |||||||||||||||||||| | ||||    
T  4179974 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttaactaaagcagccacatctagtactagcttccaggtgtttg 4180073  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttcttt 214  Q
    ||||||||||  ||| |||||| |||||||| ||||||||||||||||||||| ||||    
T  4180074 atgatattccagcatatattaccgatctaatttttaatgaaatgatataatttacttt 4180131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 27527309 - 27527460
Alignment:
Q  68 tcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttgatgatattcct 167  Q
    |||||| |||||||||||||||||||| ||||||||||| || || ||||  | ||||||| |||||||||||||||||||| | |||||||||||||||    
T  27527309 tcatgtcgagtttattaggaggcaagcgaatgaggttgcacatacactagttagggcagccacatctagtactagcttccaggtctttgatgatattcct 27527408  T
Q  168 acatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
     |||||||||| ||| | |||||||||||||||||||||||| |||||||||    
T  27527409 gcatgtattactgatttgatctttaatgaaatgatataatttactttctctc 27527460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 25594889 - 25594727
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||||||| || |||||| | | ||||||| |||||||||||||||||||||  ||||    
T  25594889 ttaacaaactctcatgtcgagtttattaggaggcaggcgaatgaggttgcacatactctaactagggcagccacatctagtactagcttccagacctttg 25594790  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    ||||||||||| |||||||| | ||| | || ||||||||||||||||||||| |||| ||||    
T  25594789 atgatattcctgcatgtatttctgatttgatatttaatgaaatgatataatttactttttctc 25594727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 38532773 - 38532607
Alignment:
Q  53 ttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatt 152  Q
    ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| || || ||||| | || |||| |||||| ||||||||| ||  |     
T  38532773 ttacttaacaaactctcatgtcgagtttattatgaggcaagcgaatgaggttgcacatacactagctagggtagccacatctaatactagcttacatgtc 38532674  T
Q  153 tttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    ||||||||||||||| |||||||||| ||| | ||||||||| ||||||||||| || |||||||||    
T  38532673 tttgatgatattcctgcatgtattactgatttgatctttaataaaatgatataagttactttctctc 38532607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 11644731 - 11644893
Alignment:
Q  36 atccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatcta 135  Q
    ||||| || ||| ||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||| |||| ||||||| | ||||||    
T  11644731 atccatttctgtaacacttatttaacaaactctcatgtcgagtttattaggaggcaaacaaatgaggttgcgcatactttagctaaggcagtcacatcta 11644830  T
Q  136 gtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaa 198  Q
     ||||| ||||||||| |||||||||||||| |||| |||||| ||| | || ||||||||||    
T  11644831 atactaacttccagatctttgatgatattccaacatatattactgattttatttttaatgaaa 11644893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 26418851 - 26418702
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||     |||| ||||||||| |||   || |||||||||| || ||||    
T  26418851 ttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagctaaggcagccacattaggtcctagcttccacatctttg 26418752  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| | ||| ||||||||| | ||| |||| ||||||||||||||||||    
T  26418751 atgaaagtccaacatgtatttctgatttaatttttaatgaaatgatataa 26418702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 32108429 - 32108578
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||     |||| ||||||||| |||   || |||||||||| || ||||    
T  32108429 ttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagctaaggcagccacattaggtcctagcttccacatctttg 32108528  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| | ||| ||||||||| | ||| |||| ||||||||||||||||||    
T  32108529 atgaaagtccaacatgtatttctgatttaatttttaatgaaatgatataa 32108578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 21182605 - 21182788
Alignment:
Q  21 attatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcca 120  Q
    ||||||||||  || |||||||| |||  || ||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||  |  || | |    
T  21182605 attatggatagtagcatccaattatgtagcacttatttaacaaactctcatgtcgagtttattaggaggcaaacaaatgaggttgcacatgcattaacta 21182704  T
Q  121 aggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    ||| |||  |||||||||||||||| ||    |||||||||||||| |||| |||||| ||| |||| ||||||  ||||||||||    
T  21182705 agggagctacatctagtactagctttcatgcctttgatgatattccaacatatattactgatttaatttttaat--aatgatataa 21182788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 11420424 - 11420275
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||     |||  ||||||||| |||   || |||||||||| || ||||    
T  11420424 ttaacaaactctcatgtcgagtttattaggaggcaagtaaatgaggttgttcatgaattagttaaggcagccacattaggtcctagcttccacatctttg 11420325  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| | ||| |||| |||| | ||| |||| ||||||||||||||||||    
T  11420324 atgaaagtccaacatatatttctgatttaatttttaatgaaatgatataa 11420275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 29601015 - 29601060
Alignment:
Q  61 caaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29601015 caaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 29601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 3601321 - 3601274
Alignment:
Q  63 aactctcatgttgagtttattaggaggcaagcaaatgaggttgctcac 110  Q
    ||||||||||| ||||| | |||||||||||| |||||||||||||||    
T  3601321 aactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcac 3601274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 17431184 - 17431218
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  17431184 gagtttattaggagacaagcaaatgaggttgctca 17431218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 44002267 - 44002301
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  44002267 gagtttattaggagacaagcaaatgaggttgctca 44002301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 8860265 - 8860176
Alignment:
Q  20 cattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||| |  ||||||| |||||||| | ||  |||||||||||| ||||  | ||||||||||||||||  |||||||| |||||    
T  8860265 cattatggatgattgtatccatttgtgtcaaaattctttaacaaactctaatgtcaaatttattaggaggcaagtgaatgaggtcgctca 8860176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 20639601 - 20639641
Alignment:
Q  63 aactctcatgttgagtttattaggaggcaagcaaatgaggt 103  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  20639601 aactctcatgttgagttcaataggaggcaagccaatgaggt 20639641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 28214344 - 28214300
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 106  Q
    ||||||||||||||||||||||||||| ||||  |||| ||||||    
T  28214344 aaactctcatgttgagtttattaggagacaagtgaatgcggttgc 28214300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 15065904 - 15066070
Alignment:
Q  53 ttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatt 152  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || || ||||| | ||||||| |||||||||||||||||||| |     
T  15065904 ttacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcacatacactagctagggcagccacatctagtactagcttccaggtc 15066003  T
Q  153 tttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    ||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||| |||||||||    
T  15066004 tttgatgatattcctgcatgtattactgatttgatctttaatgaaatgatataatttactttctctc 15066070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 25553252 - 25553414
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||| ||||||||| |||||||||||||||||||  | ||||    
T  25553252 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgcacatgctttagctaaggcagccacatctagtactagcttccaagtctttg 25553351  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    ||||||||||||||||||||||  |||| || | |||||||||||||| ||||||||||||||    
T  25553352 atgatattcctacatgtattaccaatctgatttctaatgaaatgatatgattttctttctctc 25553414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 17459367 - 17459557
Alignment:
Q  21 attatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcca 120  Q
    ||||||||||  | |||||| || ||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||   |||||| |    
T  17459367 attatggatagtaatatccacttttgtaacacttacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcacatgttctagcaa 17459466  T
Q  121 aggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatc-taatctttaatgaaatgatataatttt 210  Q
    |||||||| |||||||||||||||||| | | ||||||||||||||||| |||||||    || | |||||||||||||||||||||||||    
T  17459467 aggcagccacatctagtactagcttccgggtctttgatgatattcctacgtgtattagtactcgtgatctttaatgaaatgatataatttt 17459557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 47782994 - 47783143
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||     |||| ||||||||| |||   || |||||||||| || ||||    
T  47782994 ttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagctaaggcagccacattaggtcctagcttccacatctttg 47783093  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| | ||| ||||||||| | ||| |||| ||||||||||||||||||    
T  47783094 atgaaagtccaacatgtatttctgatttaatttttaatgaaatgatataa 47783143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 4946756 - 4946607
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||||||||     |||| ||| ||||| |||   || ||||||||||||| ||||    
T  4946756 ttaacaaattctcatatcgagtttattaggaggcaagcaaatgaggttgctcatgagttagctaagacagccacattatgtcctagcttccagatctttg 4946657  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    || | |||||  |||||||| | ||| |||| ||||||||||||||||||    
T  4946656 ataaaattccagcatgtatttctgatttaatttttaatgaaatgatataa 4946607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 13200843 - 13200992
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||     |||| |||||| ||  ||    | |||||||||| |||||||    
T  13200843 ttaacaaactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcatgagttagctaaggcaaccatattattttctagcttccacatttttg 13200942  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| | ||| |||||||| || ||| |||| ||||||||||||||||||    
T  13200943 atgaaagtccaacatgtatcactgatttaatttttaatgaaatgatataa 13200992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 40686964 - 40687094
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||||| |||| ||| ||||||||||||| ||     ||||||||||| || |||| | | |||||||||  || |||     
T  40686964 ttaacaaactctcatgtggagtttattgggagacaaacaaatgaggttgcccatgaattagccaaggcaaccacatccattcctagcttccgtatctttt 40687063  T
Q  157 atgatattcctacatgtattacggatctaat 187  Q
    |||| ||||| ||||||||||| ||| ||||    
T  40687064 atgagattccaacatgtattactgatttaat 40687094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 13563717 - 13563661
Alignment:
Q  153 tttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    |||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||||    
T  13563717 tttgatgagattccaacatgtattactgatttaatttttaatgaaatgatataattt 13563661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 46387958 - 46387911
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||| |||||||||| |  |||||||||||||||||||||||||    
T  46387958 aaactctcgtgttgagtttgtatggaggcaagcaaatgaggttgctca 46387911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 13543207 - 13543165
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatg 99  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||    
T  13543207 ttaacaaattctcatgttgagtttattaggagacaaacaaatg 13543165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 13905970 - 13905888
Alignment:
Q  19 ccattatggataagagtatccaattgtgtca--catttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgag 101  Q
    ||||||||||||| |||||||| || ||| |  |||||  |||||| ||||||||||| |||||||||| |||||| ||||||||    
T  13905970 ccattatggataaaagtatccagttttgtaattcattt--ttaacatactctcatgttaagtttattagaaggcaaacaaatgag 13905888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 21698713 - 21698865
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||   | |||| ||||||||| |||||||||||||||||||| | ||||    
T  21698713 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttagctaaggcagccacatctagtactagcttccaggtgtttg 21698812  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||||||||  |||||||||| |||||||| |||||||||||||||||||||    
T  21698813 atgatattccagcatgtattactgatctaatttttaatgaaatgatataattt 21698865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 11986180 - 11986376
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 118  Q
    ||||||||||||  ||| ||||| | ||| ||| ||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||  |||||||    
T  11986180 ccattatggatagtagtgtccaactttgtaacacttatttaacaaactctcatgtcgagtttattaggaggcaagtaaacgaggttgcacatgctctagc 11986279  T
Q  119 caaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttc 215  Q
     ||||||||| | |||||||||| ||||||| | |||||||||||||| ||||||||||| || || || ||||||||||||||||||||| |||||    
T  11986280 taaggcagccacgtctagtactaacttccaggtctttgatgatattccaacatgtattaccgacctgatttttaatgaaatgatataatttactttc 11986376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 1638368 - 1638176
Alignment:
Q  21 attatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcca 120  Q
    ||||||||||  ||||| || || ||| ||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||| |||| |    
T  1638368 attatggatagtagtatacacttatgtaacaattatttaacaaactctcatgtcgaatttattaggaggcaagcaaatgaggttgcacatactttagcta 1638269  T
Q  121 aggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttcttt 214  Q
    || ||||| ||||||||||||||||||| || | ||||||||||||  |||||||||| ||| | || ||||||||||||||||||||| ||||    
T  1638268 agacagccacatctagtactagcttccaaatctatgatgatattccagcatgtattactgat-tgatttttaatgaaatgatataatttacttt 1638176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 30063729 - 30063577
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||   | |||| ||  ||||| |||| ||||||| ||||||| | ||||    
T  30063729 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttagctaaaacagccacatccagtactaccttccaggtgtttg 30063630  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||||||||  ||||||||||  ||||||| |||||||||||||||||||||    
T  30063629 atgatattccagcatgtattacctatctaatttttaatgaaatgatataattt 30063577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 1641360 - 1641208
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| |||| ||| ||||| ||||||||||||||||||| || | ||    
T  1641360 ttaacaaacgctcatgtcgaatttattaggaggcaagcaaatgaggttgcacatactttagctaagacagccacatctagtactagcttccaaatctatg 1641261  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataatttt 210  Q
    ||||||||||  |||||||||| ||| | || ||||||||||||||||||||||    
T  1641260 atgatattccagcatgtattactgat-tgatttttaatgaaatgatataatttt 1641208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 10516121 - 10516306
Alignment:
Q  21 attatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcca 120  Q
    ||||||||||  || |||||||| |||  || ||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||  || ||| || | |    
T  10516121 attatggatagtagcatccaattatgtagcacttatttaacaaactctcatgtcgagtttattaggaggtaaggaaatgaggttgtgcatactttaacta 10516220  T
Q  121 aggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    ||||| || |||||| |||||||||| || | |||||||||||||| |||| |||||| ||||| || |||||| |||||||||||    
T  10516221 aggcaaccacatctaatactagcttctaggtctttgatgatattccaacatatattaccgatctgatttttaataaaatgatataa 10516306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 15950803 - 15950952
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||     |||| ||||||||| |||   || |||||||||| || ||||    
T  15950803 ttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagctaaggcagccacattaggtcctagcttccacatctttg 15950902  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| | ||| ||||||||| | ||| |||| ||||||||||||||||||    
T  15950903 atgaaagtccaacatgtatttctgatttaatttttaatgaaatgatataa 15950952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 7090484 - 7090441
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7090484 ttaacaaactctcatgttgagtttattaggaggcaagcaaatga 7090441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 13434356 - 13434408
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||| |||||||    
T  13434356 ttaacaaactctcatgttgagtttattaggagacaatcaaaagagattgctca 13434408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 33169536 - 33169668
Alignment:
Q  83 taggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggat 182  Q
    |||||||||||||||||||||||| ||     || | ||||||||| |||||| |||||| || |  || |||||| | ||| | ||||||||||| |||    
T  33169536 taggaggcaagcaaatgaggttgcacaagaattaactaaggcagccacatctaatactagtttacgtatctttgataaaatttcaacatgtattactgat 33169635  T
Q  183 ctaatctttaatgaaatgatataattttctttc 215  Q
     |||| |||||||||||||||||| || |||||    
T  33169636 ttaatttttaatgaaatgatataagttactttc 33169668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 30148023 - 30148060
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagc 94  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30148023 ttaacaaactctcatgtcgagtttattaggaggcaagc 30148060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 17812263 - 17812297
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  17812263 gagtttattaggagacaagcaaatgaggttgctca 17812297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 33132324 - 33132290
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  33132324 gagtttattaggagacaagcaaatgaggttgctca 33132290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 6047326 - 6047377
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||||||||  ||||||| ||||||||| |||| |||||||||    
T  6047326 ttaacaaactctcatgttgcatttattaagaggcaagcgaatg-ggttgctca 6047377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 19047097 - 19047145
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcac 110  Q
    |||||||||||| ||||||| |||||||||||| |||| ||| ||||||    
T  19047097 aaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcac 19047145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 5609609 - 5609412
Alignment:
Q  21 attatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcca 120  Q
    ||||||||||  |||||||| || ||| |||  |||||||||||||||||||| |||||||||||||||||||| |||||||||||  ||||| |||| |    
T  5609609 attatggatagcagtatccacttctgtaacacctacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcatacactttagcta 5609510  T
Q  121 aggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
    | |||||  |||||||||||||||||||| | |||||||||||| || |||||||||  ||||| || ||||||||||||||||||||| ||||||||    
T  5609509 aagcagctacatctagtactagcttccaggtctttgatgatatttctgcatgtattaatgatctgatttttaatgaaatgatataatttactttctct 5609412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 5086598 - 5086750
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| | ||||||| |||||||||||||||||||||| ||||    
T  5086598 ttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcacatactctagctagggcagccacatctagtactagcttccagatctttg 5086697  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||||||||| |||||||| | ||| | || |||||||||||||||||||||    
T  5086698 atgatattcctgcatgtatttctgatttgatatttaatgaaatgatataattt 5086750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 27244153 - 27243955
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagc 118  Q
    ||||||||||||  ||| | ||||| ||| | | ||| ||||||||||||||||| |||||||||||||  ||| ||||||||||||| || |   ||||    
T  27244153 ccattatggatagtagtttacaattttgtaatacttatttaacaaactctcatgtcgagtttattaggaaccaaacaaatgaggttgcacatatgttagc 27244054  T
Q  119 caaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
     ||||||||| |||||||||||||||||||| | |||||||||||||| || |||||| | |||||||| ||||||||||||||||||||| ||||||||    
T  27244053 taaggcagccacatctagtactagcttccaggtctttgatgatattccaacgtgtatttccgatctaat-tttaatgaaatgatataatttactttctct 27243955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 21824376 - 21824532
Alignment:
Q  53 ttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatt 152  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||| ||||||||| ||| |||| ||||||||||  |     
T  21824376 ttacttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatacgttagctaaggcagccacatgtagttctagcttccaagtc 21824475  T
Q  153 tttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||||||||||||  |||||||| |  || | || |||||||||||||||||||||    
T  21824476 tttgatgatattccagcatgtatttccaatttgatttttaatgaaatgatataattt 21824532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 13783874 - 13784036
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    |||||||| |||||||| ||||||| |||||||||||| ||||||||||| || |||||||| ||||||||| |||||||| |||||||||  || ||||    
T  13783874 ttaacaaaatctcatgtcgagtttactaggaggcaagcgaatgaggttgcacatactctagctaaggcagccacatctagttctagcttccgtatctttg 13783973  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||| || || ||||||||||| ||  |||||||| |||||||||| ||| ||||||||||||    
T  13783974 atgaaatcccaacatgtattactgaattaatcttttatgaaatgatttaagtttctttctctc 13784036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 33973049 - 33973249
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac-tctag 117  Q
    ||||||| ||||| ||| | ||||| ||| ||| ||| |||||||||||||||||  ||||||||| ||| ||| ||||||||||||| || || | |||    
T  33973049 ccattatagataatagtttacaattttgtaacacttatttaacaaactctcatgtcaagtttattaagagacaaacaaatgaggttgcacatacgtttag 33973148  T
Q  118 ccaaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctc 217  Q
    | |||| |||| |||||||||||||||||||||| |||||||||||| | ||||||||| |  |||| || |||||||||||||| |||||| |||||||    
T  33973149 ctaaggtagccacatctagtactagcttccagatctttgatgatatttcaacatgtatttccaatctgatttttaatgaaatgatgtaatttactttctc 33973248  T
Q  218 t 218  Q
    |    
T  33973249 t 33973249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 29526831 - 29526980
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||     |||| ||||||||| |||   || |||||||||| || ||||    
T  29526831 ttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagctaaggcagccacattaggtcctagcttccacatctttg 29526930  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| | ||| ||||||||| | ||| |||| ||||||||||||||||||    
T  29526931 atgaaagtccaacatgtatttctgatttaatttttaatgaaatgatataa 29526980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 665053 - 664901
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||     |||| ||| || || ||||||||| ||||||||  |||||||    
T  665053 ttaacaaactctcatgtcgagtttattaggagacaagcaaatgaggttgcacatgaattagctaagacaaccacatctagtagtagcttccgaatttttg 664954  T
Q  157 atgatattcctacatgtat---tacggatctaatctttaatgaaatgatataa 206  Q
    |||| ||||  ||||||||   ||| ||| |||| ||||||||||||||||||    
T  664953 atgaaattcaaacatgtattactactgatttaatttttaatgaaatgatataa 664901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 7097483 - 7097334
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagta-ctagcttccagattttt 155  Q
    |||| ||||||| |||| |||||||||| ||||||||||||||||||||||||     |||| ||||||||| ||| || || |||||||||| || |||    
T  7097483 ttaataaactcttatgtcgagtttattaagaggcaagcaaatgaggttgctcatgagttagctaaggcagccacat-tattacctagcttccacatcttt 7097385  T
Q  156 gatgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
     |||| ||||| ||||||||||| ||| |||| ||||||||||||||||||    
T  7097384 aatgaaattccaacatgtattactgatttaatttttaatgaaatgatataa 7097334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 215
Target Start/End: Complemental strand, 21588214 - 21588056
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||     |||| || |||||| ||||||||||||||||    || ||||    
T  21588214 ttaacaaactctcatgtcgagtttattaggaggcaatcaaatgaggttgcacatgaattagctaacgcagccacatctagtactagcttttgtatctttg 21588115  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttc 215  Q
    |||| ||||| | || |||| | ||| |||| |||||||||||||||||| || |||||    
T  21588114 atgaaattccaatatatattcctgatttaatttttaatgaaatgatataagttactttc 21588056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 19017091 - 19017042
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  19017091 ttaacaaactctcgtgttgagtttattaggaggcaagcaaatgtggttgc 19017042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 9697340 - 9697284
Alignment:
Q  153 tttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    |||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||||    
T  9697340 tttgatgagattccaacatgtattactgatttaatttttaatgaaatgatataattt 9697284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 39969998 - 39970055
Alignment:
Q  55 acttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 112  Q
    |||| ||||||||||  |||||||||| |||| | |||||||||||||||||||||||    
T  39969998 acttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttgctcacac 39970055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 15455879 - 15455946
Alignment:
Q  139 ctagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||||||||| || |||||||| | ||| ||||||||| | ||| |||| ||||||||||||||||||    
T  15455879 ctagcttccacatctttgatgaaagtccaacatgtatttctgatttaatttttaatgaaatgatataa 15455946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 19541874 - 19541973
Alignment:
Q  120 aaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||||| || |||||||| ||||||||   |  |||||||| ||||  ||||||||||| ||  |||| |||||||||||||||||| || |||||||||    
T  19541874 aaggcaaccacatctagttctagcttctgtacatttgatgaaattctaacatgtattactgaattaatttttaatgaaatgatataagttactttctctc 19541973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 6621403 - 6621369
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  6621403 gagtttattaggagacaagcaaatgaggttgctca 6621369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 9678263 - 9678221
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatg 99  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||    
T  9678263 ttaacaaattctcatgttgagtttattaggagacaaacaaatg 9678221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 15846957 - 15846923
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  15846957 gagtttattaggagacaagcaaatgaggttgctca 15846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 15856167 - 15856133
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  15856167 gagtttattaggagacaagcaaatgaggttgctca 15856133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 36308020 - 36308054
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  36308020 gagtttattaggagacaagcaaatgaggttgctca 36308054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 15455808 - 15455845
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagc 94  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  15455808 ttaacaaactctcatgtcgagtttactaggaggcaagc 15455845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 234781 - 234615
Alignment:
Q  53 ttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatt 152  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||||||| || || ||||| | |||| || ||||||||||||||||||||||     
T  234781 ttacttaacaaactctcatgtcgagtttattaggaggcaaacgaatgaggttgcacatacactagctagggcatccacatctagtactagcttccagatc 234682  T
Q  153 tttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    ||||||||||||||| |||||||||| ||| | || ||||||||||||||||||||  |||||||||    
T  234681 tttgatgatattcctgcatgtattactgatttgatttttaatgaaatgatataattcactttctctc 234615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 9734514 - 9734353
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||  || |||| ||||||||| |||||||||||||||||||| | ||||    
T  9734514 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacatgctttagctaaggcagccacatctagtactagcttccaggtctttg 9734415  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctct 218  Q
    ||||||||||||||| ||||||  |||| || | |||||||||||||| ||||| |||||||    
T  9734414 atgatattcctacatatattaccaatctgatttctaatgaaatgatatgattttatttctct 9734353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 8968450 - 8968288
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||  || |||| ||||||||| |||||||||||||||||||  | ||||    
T  8968450 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacatgctttagctaaggcagccacatctagtactagcttccaagtctttg 8968351  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||||||||||||||||||||   || | || | |||||||||||||| ||||||||||||||    
T  8968350 atgatattcctacatgtattaacaatttgatttctaatgaaatgatatgattttctttctctc 8968288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 2439493 - 2439655
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||| |||||||||||||||  | ||||    
T  2439493 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatactttagctaaggcagccacatgtagtactagcttccaagtctttg 2439592  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    || |||||||  |||||||| |  || |||| ||||||||||||||||||||| ||| |||||    
T  2439593 ataatattccagcatgtatttccaatttaatttttaatgaaatgatataatttacttgctctc 2439655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 2651871 - 2651709
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||| || || ||||| | ||||||| |||||||||||||||||||| | ||||    
T  2651871 ttaacaaactctcatgtcgagtttattaggaggcaaacgaatgaggttgcacatacactagctagggcagccacatctagtactagcttccaggtctttg 2651772  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||||| |||| |||||||||| ||| | || ||||||||||||||||||||  |||||||||    
T  2651771 atgatactcctgcatgtattactgatttgatttttaatgaaatgatataattcactttctctc 2651709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 14504219 - 14504021
Alignment:
Q  21 attatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcca 120  Q
    ||||||||||  | |||||| || ||| |||  ||||||| ||| |||||||| |||||||||||||||||||| ||||||||||| ||| ||||||| |    
T  14504219 attatggatagtaatatccacttctgtaacacatacttaaaaaattctcatgtcgagtttattaggaggcaagcgaatgaggttgcacacgctctagcta 14504120  T
Q  121 aggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    || ||||| |||||||||||||||||| | | ||||||||||||||| |||||||||  ||| | |||||||||||||||| |||||||  ||||||||    
T  14504119 agacagccacatctagtactagcttcctggtctttgatgatattcctgcatgtattagtgatttgatctttaatgaaatgacataatttattttctctc 14504021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 15790046 - 15790208
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | |||||| ||||||||| |||||||| |||||||||  || ||||    
T  15790046 ttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcacataatctagctaaggcagccacatctagttctagcttccgtatctttg 15790145  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||| || || ||||||||||| ||  ||||||||||||||||||| ||| ||||||||||||    
T  15790146 atgaaatcccaacatgtattactgaattaatctttaatgaaatgatttaagtttctttctctc 15790208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 26307342 - 26307540
Alignment:
Q  21 attatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcca 120  Q
    ||||||||||  ||||| ||||| |||  || ||| |||| |||||||| ||| ||||||||||||||||||| |||||||||||| ||  |  |||| |    
T  26307342 attatggatagtagtattcaattatgtagcacttatttaataaactctcctgtcgagtttattaggaggcaagtaaatgaggttgcacatgcattagcta 26307441  T
Q  121 aggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
     ||||||| ||||||||||||| |||||  | |||||||||||||| ||||||||||| ||| |||| |||||||||||||||||| ||| ||||||||    
T  26307442 gggcagccacatctagtactagtttccatgtctttgatgatattccaacatgtattactgatttaatttttaatgaaatgatataaatttttttctctc 26307540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 34935092 - 34935244
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || |   |||| ||||||||| ||| ||||||||||||||||   ||||    
T  34935092 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacataagttagctaaggcagccacatgtagtactagcttccaggcatttg 34935191  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||| ||||  |||||||| | ||| | || |||||||||||||||||||||    
T  34935192 atgatgttccagcatgtatttccgattttatttttaatgaaatgatataattt 34935244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 32073670 - 32073521
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||     |||| ||||||||| |||   || |||||||||| || ||||    
T  32073670 ttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagctaaggcagccacattaggtcctagcttccacatctttg 32073571  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| | ||| ||||||||| | ||| |||| |||||| |||||||||||    
T  32073570 atgaaagtccaacatgtatttctgatttaatttttaataaaatgatataa 32073521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 46091971 - 46092088
Alignment:
Q  89 gcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatc 188  Q
    |||||||||||||||||| || ||  |||| ||| || |  |||||||||||| ||||||||| ||||||||| ||||  |||||||| | ||||| |||    
T  46091971 gcaagcaaatgaggttgcacatacattagctaagacaactacatctagtactaacttccagatctttgatgatgttccagcatgtattgctgatcttatc 46092070  T
Q  189 tttaatgaaatgatataa 206  Q
    |||| |||||| ||||||    
T  46092071 tttagtgaaataatataa 46092088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 29704653 - 29704702
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 106  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| ||||||    
T  29704653 ttaaaaaactctcatgttgaatttattaggaggcaagcgaatgtggttgc 29704702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 48052386 - 48052426
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgagg 102  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  48052386 aaactcacatgttgagtttattaggaggcaagctaatgagg 48052426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 13434527 - 13434480
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggtt 104  Q
    |||||||||||||||||| ||||||||||||| |||| ||| ||||||    
T  13434527 ttaacaaactctcatgttaagtttattaggagacaagtaaaagaggtt 13434480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 10981024 - 10980975
Alignment:
Q  60 acaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||| || ||||||||||||||||| ||| ||||| ||||||||||    
T  10981024 acaaactcgcaggttgagtttattaggagacaaacaaataaggttgctca 10980975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 37796615 - 37796664
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcaca 111  Q
    |||| ||||||| ||||||| |||||||||||| |||||||| |||||||    
T  37796615 aaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctcaca 37796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 38998917 - 38998965
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcac 110  Q
    |||||||||||| ||||||| |||||||||||| |||| ||| ||||||    
T  38998917 aaactctcatgtcgagtttaataggaggcaagctaatggggtcgctcac 38998965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 11596 - 11444
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||| |||||||||||||||| | ||||    
T  11596 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatactttagctaaggcagccacatgtagtactagcttccaggtctttg 11497  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||||| || ||||||||| | ||  | || |||||||||||||||||||||    
T  11496 atgatatcccaacatgtatttccgacttgatttttaatgaaatgatataattt 11444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 28162025 - 28161868
Alignment:
Q  52 tttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagat 151  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||  |||| ||| ||||| ||| |||||||||||||||| |    
T  28162025 tttatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacatacgttagctaagacagccacatgtagtactagcttccaggt 28161926  T
Q  152 ttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
     ||||||||||||||  |||||||| |  || |||| |||||||||||||||||||||    
T  28161925 ctttgatgatattccagcatgtatttccaatttaatttttaatgaaatgatataattt 28161868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 25732403 - 25732251
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||  || |||| |||||| || ||| |||||||||||||||| | ||||    
T  25732403 ttaacaaactctcatgtcgagtttattaggaggtaagcaaatgaggttgcacatgctttagctaaggcaaccacatgtagtactagcttccaggtctttg 25732304  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||||||||  |||||||| | ||  | || |||||||||||||||||||||    
T  25732303 atgatattccagcatgtatttccgaattgatttttaatgaaatgatataattt 25732251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 7995188 - 7995337
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||| || |||| ||||||| ||||| ||     |||| ||||||||| |||||| || |||||| |  || ||||    
T  7995188 ttaacaaactctcatgtcgagtttattatgaagcaaacaaatgaagttgcacatgaattagctaaggcagccacatctaatattagctttcgtatctttg 7995287  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| ||| | ||||||||||| ||| |||| |||||| |||||||||||    
T  7995288 atgaaatttcaacatgtattactgatttaatttttaataaaatgatataa 7995337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 25133137 - 25133221
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggt 103  Q
    ||||||||||||  ||||||||||| ||| |    || |||| |||||||||| ||||||||||||||||||||| |||||||||    
T  25133137 ccattatggatagtagtatccaattatgtaattcctatttaataaactctcatattgagtttattaggaggcaagaaaatgaggt 25133221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 39533709 - 39533753
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 106  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  39533709 aaactctcatgttgagtttattaggaggcaagcgaatgtggttgc 39533753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 3989487 - 3989574
Alignment:
Q  19 ccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 106  Q
    ||||||||||||  ||||||||||| ||| |    || ||||||||||||||||| |||||||||||  | |||||||||||||||||    
T  3989487 ccattatggatagtagtatccaattatgtaattcctatttaacaaactctcatgtggagtttattagacgacaagcaaatgaggttgc 3989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 12784155 - 12784017
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgagg-ttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttgatga 160  Q
    |||||||||||| ||||||||||| |||||| ||||||||| |||| ||     |||| |||||| |  |||||| ||||| |||||  || ||||||||    
T  12784155 aaactctcatgtggagtttattagaaggcaaacaaatgaggtttgcacatgaattagctaaggcaactacatctaatactaacttccgtatctttgatga 12784056  T
Q  161 tattcctacatgtattacggatctaatctttaatgaaat 199  Q
     ||||| | ||||||||| ||| |||| |||||||||||    
T  12784055 gattcccatatgtattaccgatttaatttttaatgaaat 12784017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 22974832 - 22974922
Alignment:
Q  130 catctagtactagcttccagatttttgatgatattcctacatgtattacggatct-aatctttaatgaaatgatataattttctttctctc 219  Q
    ||||||||||||||||  || | |||||||||||||| ||||||||||| ||||| | | |||||| ||||||||| ||||  ||||||||    
T  22974832 catctagtactagcttttaggtctttgatgatattccaacatgtattaccgatctgattttttaataaaatgatatgatttattttctctc 22974922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 14848462 - 14848428
Alignment:
Q  75 gagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  14848462 gagtttattaggagacaagcaaatgaggttgctca 14848428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 3989632 - 3989676
Alignment:
Q  162 attcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    ||||| ||||||||||| ||| |||| ||||||||||||||||||    
T  3989632 attccaacatgtattactgatttaatttttaatgaaatgatataa 3989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 12247058 - 12247106
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttg 105  Q
    |||||||||||||||||||| ||||||| || |||| ||||||| ||||    
T  12247058 ttaacaaactctcatgttgactttattaagaagcaaacaaatgaagttg 12247106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 916 - 1068
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||| ||||||||| ||| ||||||||| |||||  | ||||    
T  916 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcataccttagctaaggcagccacatgtagtactagtttccaagtctttg 1015  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    ||||||||||  |||||||| |  || | || |||||||||||||||||||||    
T  1016 atgatattccagcatgtatttccaatttgatttttaatgaaatgatataattt 1068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 2300 - 2138
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||||| | || |||||||| ||||||||| |||| ||| |||||||||  || ||||    
T  2300 ttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggtttcacatactctagctaaggcagccacatccagttctagcttccgtatctttg 2201  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataattttctttctctc 219  Q
    |||| || || ||||||||||| ||| |||| |||||||||||||| ||| | ||||||||||    
T  2200 atgaaatcccaacatgtattactgatttaatttttaatgaaatgatttaagtctctttctctc 2138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 209
Target Start/End: Complemental strand, 14091 - 13933
Alignment:
Q  53 ttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac--tctagccaaggcagccgcatctagtactagcttccaga 150  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||  | |||| ||||||||| ||| ||||||||||||| |      
T  14091 ttacttaacaaactctcatgtcgagtttattaggaggcaagaaaatgaggttgctcataccttttagctaaggcagccacatgtagtactagcttcaaag 13992  T
Q  151 tttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataattt 209  Q
    | ||||||||||||||  |||||||| |  || | || |||||||||||||||||||||    
T  13991 tctttgatgatattccagcatgtatttccaatttgatttttaatgaaatgatataattt 13933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 194
Target Start/End: Complemental strand, 14548 - 14381
Alignment:
Q  27 gataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcag 126  Q
    ||||| || ||||| || ||| ||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||| |||| ||| ||     
T  14548 gataatagcatccatttctgtaacaattatttaacaaactctcatgtcgaatttattaggaggcaagcaaatgaggttgcacatactttagctaagacaa 14449  T
Q  127 ccgcatctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaat 194  Q
     | |||||||||||| |||| | || ||| |||||||||| ||||||||||||||||| || ||||||    
T  14448 tcacatctagtactaacttcaatatctttaatgatattccaacatgtattacggatctgatttttaat 14381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 52679 - 52828
Alignment:
Q  57 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagcttccagatttttg 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||| |||     |||| ||||||||| |||   || |||||||||| || ||||    
T  52679 ttaacaaactctcatgtcgagtttattaggaggcaagcaaatgacgttgttcatgagttagctaaggcagccacattatgtcctagcttccacatctttg 52778  T
Q  157 atgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    |||| |||||  |||||||| | ||| |||| ||||||||||||||||||    
T  52779 atgaaattccagcatgtatttctgatttaatttttaatgaaatgatataa 52828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 215522 - 215597
Alignment:
Q  131 atctagtactagcttccagatttttgatgatattcctacatgtattacggatctaatctttaatgaaatgatataa 206  Q
    ||||||||||||||||||  | |||||||||||||| ||||||||||| ||||| || |||| |||||||||||||    
T  215522 atctagtactagcttccatgtctttgatgatattccaacatgtattactgatctgatttttagtgaaatgatataa 215597  T

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Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 5426 - 5379
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  5426 aaactctcatgttgagtttgtatggaggcaagcaaatgaggttgctca 5379  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 11031 - 11078
Alignment:
Q  62 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 109  Q
    |||||||| |||||||||| |  |||||||||||||||||||||||||    
T  11031 aaactctcgtgttgagtttgtacggaggcaagcaaatgaggttgctca 11078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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