View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21462_low_3 (Length: 494)

Name: NF21462_low_3
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21462_low_3
NF21462_low_3
[»] chr5 (21 HSPs)
chr5 (19-445)||(2686425-2686850)
chr5 (19-281)||(2693727-2693983)
chr5 (366-474)||(25524122-25524228)
chr5 (391-445)||(19754154-19754208)
chr5 (391-445)||(19752934-19752988)
chr5 (366-455)||(25523070-25523156)
chr5 (391-448)||(1796077-1796134)
chr5 (366-443)||(5730442-5730517)
chr5 (366-446)||(22940645-22940722)
chr5 (366-444)||(7311591-7311666)
chr5 (366-417)||(18486954-18487002)
chr5 (366-415)||(5778890-5778936)
chr5 (366-416)||(5777902-5777947)
chr5 (387-445)||(18485157-18485215)
chr5 (386-455)||(2186788-2186857)
chr5 (438-474)||(2686425-2686461)
chr5 (366-416)||(25056434-25056481)
chr5 (392-444)||(28538700-28538752)
chr5 (386-446)||(33158116-33158176)
chr5 (391-455)||(36486502-36486566)
chr5 (438-474)||(36486512-36486548)
[»] chr2 (20 HSPs)
chr2 (391-448)||(18868947-18869004)
chr2 (391-445)||(22848214-22848268)
chr2 (392-447)||(16446178-16446233)
chr2 (390-448)||(13567994-13568052)
chr2 (366-444)||(11258836-11258911)
chr2 (366-444)||(18906012-18906087)
chr2 (366-445)||(36449779-36449855)
chr2 (366-444)||(7899907-7899982)
chr2 (391-434)||(11938823-11938866)
chr2 (366-445)||(18904368-18904444)
chr2 (391-474)||(32739646-32739728)
chr2 (392-443)||(36450947-36450998)
chr2 (366-444)||(38840518-38840593)
chr2 (392-445)||(13570581-13570634)
chr2 (388-417)||(21837088-21837117)
chr2 (386-446)||(18300747-18300807)
chr2 (438-474)||(18300748-18300784)
chr2 (388-455)||(18869177-18869245)
chr2 (438-482)||(22848232-22848276)
chr2 (400-444)||(23869560-23869604)
[»] chr8 (15 HSPs)
chr8 (387-445)||(1824102-1824160)
chr8 (387-445)||(1858547-1858605)
chr8 (366-445)||(10006345-10006421)
chr8 (366-445)||(24488703-24488785)
chr8 (368-444)||(40471172-40471244)
chr8 (366-445)||(18979144-18979220)
chr8 (366-455)||(30568888-30568973)
chr8 (391-445)||(5514004-5514058)
chr8 (366-455)||(10007777-10007863)
chr8 (366-455)||(12351922-12352008)
chr8 (366-417)||(24483144-24483192)
chr8 (438-474)||(1824102-1824138)
chr8 (438-474)||(1858547-1858583)
chr8 (438-474)||(12351962-12351998)
chr8 (392-444)||(24123923-24123975)
[»] chr1 (20 HSPs)
chr1 (368-444)||(24426100-24426173)
chr1 (391-445)||(45149995-45150049)
chr1 (392-445)||(11437223-11437276)
chr1 (366-455)||(23980480-23980566)
chr1 (366-445)||(11436043-11436119)
chr1 (391-448)||(14999307-14999364)
chr1 (391-443)||(41364851-41364903)
chr1 (366-446)||(45157232-45157308)
chr1 (396-454)||(40384753-40384811)
chr1 (391-445)||(52274991-52275045)
chr1 (392-445)||(24422824-24422877)
chr1 (391-444)||(33088090-33088143)
chr1 (366-414)||(39221359-39221405)
chr1 (437-474)||(43378737-43378774)
chr1 (368-435)||(52276197-52276261)
chr1 (438-474)||(14999325-14999361)
chr1 (438-474)||(24422841-24422877)
chr1 (366-417)||(39222525-39222574)
chr1 (438-474)||(52275009-52275045)
chr1 (366-416)||(52827348-52827395)
[»] chr7 (18 HSPs)
chr7 (366-445)||(18371425-18371501)
chr7 (366-445)||(7501876-7501952)
chr7 (366-445)||(22629484-22629563)
chr7 (366-443)||(17782579-17782653)
chr7 (391-445)||(47369804-47369858)
chr7 (391-443)||(127359-127411)
chr7 (392-444)||(22630477-22630529)
chr7 (391-443)||(31949828-31949880)
chr7 (366-443)||(3227620-3227694)
chr7 (387-442)||(47524544-47524599)
chr7 (366-415)||(47525421-47525467)
chr7 (391-445)||(18372481-18372535)
chr7 (368-444)||(42886311-42886384)
chr7 (437-474)||(31659663-31659700)
chr7 (392-445)||(43899470-43899523)
chr7 (366-443)||(3227109-3227182)
chr7 (366-445)||(31659623-31659700)
chr7 (366-416)||(31661062-31661109)
[»] chr3 (23 HSPs)
chr3 (366-446)||(12700176-12700251)
chr3 (386-445)||(8456495-8456554)
chr3 (366-446)||(29932722-29932798)
chr3 (366-446)||(29981876-29981952)
chr3 (392-455)||(54539779-54539842)
chr3 (391-445)||(29931249-29931303)
chr3 (391-445)||(29980403-29980457)
chr3 (387-445)||(47614204-47614262)
chr3 (368-443)||(47610606-47610678)
chr3 (391-455)||(7268841-7268905)
chr3 (366-445)||(54540814-54540890)
chr3 (386-445)||(12703524-12703583)
chr3 (387-445)||(534518-534576)
chr3 (366-446)||(19984850-19984927)
chr3 (392-445)||(7267667-7267720)
chr3 (392-445)||(55192019-55192072)
chr3 (438-474)||(534540-534576)
chr3 (391-419)||(535832-535860)
chr3 (392-444)||(4271464-4271516)
chr3 (392-444)||(6170296-6170348)
chr3 (392-444)||(6249633-6249685)
chr3 (392-444)||(7758426-7758478)
chr3 (366-417)||(47615600-47615648)
[»] chr4 (23 HSPs)
chr4 (366-446)||(26421645-26421721)
chr4 (391-445)||(17383015-17383069)
chr4 (368-446)||(12129626-12129701)
chr4 (366-443)||(25685848-25685922)
chr4 (366-445)||(17388235-17388310)
chr4 (366-445)||(49308051-49308126)
chr4 (392-445)||(52491631-52491684)
chr4 (438-474)||(26421646-26421682)
chr4 (366-444)||(1963197-1963272)
chr4 (387-446)||(31601008-31601067)
chr4 (366-419)||(48781095-48781145)
chr4 (366-417)||(5526178-5526225)
chr4 (366-443)||(10471414-10471488)
chr4 (366-443)||(13386558-13386633)
chr4 (392-445)||(8758861-8758914)
chr4 (391-444)||(19750600-19750653)
chr4 (391-444)||(19789153-19789206)
chr4 (366-443)||(13386015-13386090)
chr4 (366-416)||(25684935-25684982)
chr4 (391-455)||(31599812-31599876)
chr4 (438-474)||(31599830-31599866)
chr4 (438-474)||(31601009-31601045)
chr4 (393-445)||(49306799-49306851)
[»] chr6 (13 HSPs)
chr6 (366-455)||(7314881-7314966)
chr6 (366-443)||(8659266-8659340)
chr6 (366-443)||(8821874-8821948)
chr6 (366-448)||(16704518-16704597)
chr6 (386-444)||(16703586-16703643)
chr6 (366-416)||(3721613-3721660)
chr6 (366-416)||(8660256-8660303)
chr6 (366-415)||(17496794-17496844)
chr6 (366-417)||(7316346-7316394)
chr6 (438-474)||(16704521-16704557)
chr6 (388-416)||(26574639-26574667)
chr6 (389-445)||(26575078-26575134)
chr6 (391-443)||(34834605-34834657)
[»] scaffold2034 (1 HSPs)
scaffold2034 (366-455)||(234-320)
[»] scaffold0059 (1 HSPs)
scaffold0059 (366-446)||(4753-4829)
[»] scaffold0302 (1 HSPs)
scaffold0302 (392-445)||(17494-17547)
[»] scaffold0294 (1 HSPs)
scaffold0294 (366-445)||(5462-5538)


Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 2686850 - 2686425
Alignment:
Q  19 acctttgcccacttcaacacatcctcagcaacgtgttgcaacaatcttccttgaaacagagtctttaaaccggtgaaaggaacctaaacataaaaaatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2686850 acctttgcccacttcaacacatcctcagcaacgtgttgcaacaatcttccttgaaacagagtctttaaaccggtgaaaggaacctaaacataaaaaatag 2686751  T
Q  119 cattatttaggcctagaaactttaataataggcaacaaatatatttgaatttgttgtttttcattacctgattccttaaatattgtctgtcttcggtggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2686750 cattatttaggcctagaaactttaataataggcaacaaatatatttgaatttgttgtttttcattacctgatttcttaaatattgtctgtcttcggtggt 2686651  T
Q  219 ccaatcagcaatcatatccaggacattatgtaatgaaacctcatcatatagtagacctacctggaatatatagaaaagattaccacaataaactaacatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2686650 ccaatcagcaatcatatccaggacattatgtaatgaaacctcatcatatagtagacctacctggaatatataggaaagattaccacaataaactaacatt 2686551  T
Q  319 agattaattacaacaatattaacattattgtgtacattaattaggatgctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||||||| |    
T  2686550 agattaattacaacaatattaacattattgtgtacattaattaggaggttaaagtgcactttccccct-cctctaacttttaaaaacttgcaattttgat 2686452  T
Q  419 ctcataaatacaaaaacaacaattttg 445  Q
    ||| ||| ||||||||| | |||||||    
T  2686451 ctcttaagtacaaaaactataattttg 2686425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 2693983 - 2693727
Alignment:
Q  19 acctttgcccacttcaacacatcctcagcaacgtgttgcaacaatcttccttgaaacagagtctttaaaccggtgaaaggaacctaaacataaaaaatag 118  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||  |||||||||| ||||| ||||||||||||| ||||||| |||    
T  2693983 acctttgcccacttcaacacatcttcagcaacatgttgcaacaatctaccttgaaatggagtctttaacccggtaaaaggaacctaaagataaaaa-tag 2693885  T
Q  119 cattatttagg---------cctagaaactttaataataggcaacaaatatatttgaatttgttgtttttcattacctgattccttaaatattgtctgtc 209  Q
     || ||| |||         |||||||||||||| ||      ||||        ||||| |||||||||||||||||||||||| ||||||||| ||||    
T  2693884 aatgattgaggtcttaaggtcctagaaactttaaaaa------acaa--------gaattggttgtttttcattacctgattcctcaaatattgtttgtc 2693799  T
Q  210 ttcggtggtccaatcagcaatcatatccaggacattatgtaatgaaacctcatcatatagtagacctacctg 281  Q
    |||   |||||| || ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||    
T  2693798 ttcatcggtccagtccgcaatcatatctagaacattatgtagtgaaacctcatcatatagtagacctacctg 2693727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 474
Target Start/End: Complemental strand, 25524228 - 25524122
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaagtacaaaaact 465  Q
    ||||||||||||||| |||| ||||  || ||| ||||| ||| |||||||| | | ||| ||||||||| |||||||||  ||||||||||||||||||    
T  25524228 gctaaagtgcacttttcccccccct--aatttttaaaaatttgtaattttggccccctaagtacaaaaactacaattttggcctcctaagtacaaaaact 25524131  T
Q  466 acaattttg 474  Q
    | |||||||    
T  25524130 ataattttg 25524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 19754208 - 19754154
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||| | | ||||||||||||| |||||||||    
T  19754208 ctaactttcaaaaacttgcaattttggccccctaaatacaaaaactacaattttg 19754154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 19752934 - 19752988
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||| | | ||| ||||||||| |||||||||    
T  19752934 ctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 19752988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 25523070 - 25523156
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||| | | | ||| ||||||||| |||||||||| | ||||||    
T  25523070 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttgaccccctaag 25523156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 1796077 - 1796134
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatc 448  Q
    ||||||||||||||||||||| ||||| | | ||| ||||||||| ||||||||||||    
T  1796077 ctaactttcaaaaacttgcaactttggccacctaagtacaaaaactacaattttgatc 1796134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 5730442 - 5730517
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||||||||||  || ||| ||| ||||| |||||||    
T  5730442 gctaaagtgcacttttcccc-ccct-taactttcaaaaacttgcaattttggcttcctaagtaccaaaaccacaattt 5730517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 22940722 - 22940645
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||||| | | ||| ||||||||  ||||||||||    
T  22940722 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttggccccctaagtacaaaaattacaattttga 22940645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 444
Target Start/End: Original strand, 7311591 - 7311666
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||   ||||| ||| |||||||||||||||||||||| |||| |||  || ||||||||| ||||||||    
T  7311591 gctaaagtgcac---ccccccccccctaactttcaaaaacttgcaatattggcctcccaagtacaaaaactacaatttt 7311666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 18487002 - 18486954
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttgg 417  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  18487002 gctaaagtgcactttccccc--cct-taactttcaaaaacttgcaattttgg 18486954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 5778936 - 5778890
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaatttt 415  Q
    ||||||||||||||| ||||   |||||||||||||||||||||||||||    
T  5778936 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaatttt 5778890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 5777902 - 5777947
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttg 416  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||||    
T  5777902 gctaaagtgcactttccccc-----ctaactttcaaaaacttgcaattttg 5777947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 18485157 - 18485215
Alignment:
Q  387 ccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||| |||||||||||||||||| | | ||| ||  |||||||||||||||    
T  18485157 ccctctaactttaaaaaacttgcaattttggccccctaagtatcaaaacaacaattttg 18485215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 455
Target Start/End: Original strand, 2186788 - 2186857
Alignment:
Q  386 tccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    |||| |||| ||||||||| |||||||||||||||  ||  ||||||||| |||||||| ||| ||||||    
T  2186788 tccccctaagtttcaaaaagttgcaattttggtcttctatgtacaaaaactacaattttaatcccctaag 2186857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 2686461 - 2686425
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  2686461 caattttgatctcttaagtacaaaaactataattttg 2686425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 25056481 - 25056434
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttg 416  Q
    ||||||||||||||| || ||||   |||||||||||||||||||||||||    
T  25056481 gctaaagtgcacttttccactcc---taactttcaaaaacttgcaattttg 25056434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 28538700 - 28538752
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||||||||||||||||||||||||  | | ||| ||||||||| ||||||||    
T  28538700 taactttcaaaaacttgcaattttgaccccttaagtacaaaaactacaatttt 28538752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 33158116 - 33158176
Alignment:
Q  386 tccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    |||| ||||||||||||||||||||||||||    | ||| ||||||||| ||||||||||    
T  33158116 tccccctaactttcaaaaacttgcaattttgacaccctaagtacaaaaactacaattttga 33158176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 36486566 - 36486502
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    |||||||| |||||||||||||||||  | | ||| ||||||||| ||||||||| || ||||||    
T  36486566 ctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggtcccctaag 36486502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 36486548 - 36486512
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  36486548 caattttgaccccctaagtacaaaaactacaattttg 36486512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 18868947 - 18869004
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatc 448  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  18868947 ctaactttcaaaaacttgcaattttggcctcctaaatacaaaaactacaattttgatc 18869004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 22848214 - 22848268
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  22848214 ctaactttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttg 22848268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 447
Target Start/End: Original strand, 16446178 - 16446233
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgat 447  Q
    ||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  16446178 taactttcaaaaacttgcaattttaacctcataaatacaaaaactacaattttgat 16446233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 13567994 - 13568052
Alignment:
Q  390 tctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatc 448  Q
    ||||| |||||||||||||||||||||| | | ||||||||||||| ||||||||||||    
T  13567994 tctaagtttcaaaaacttgcaattttggccccctaaatacaaaaactacaattttgatc 13568052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 11258911 - 11258836
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||| |||||||    ||||||||||||||||||||||||||||| | | ||| ||||||||| ||||||||    
T  11258911 gctaaagtgcattttcccct---ctctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaatttt 11258836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 18906087 - 18906012
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||||| |||||   |||||||||||||||||||||||||| | | | ||| ||||||||| ||||||||    
T  18906087 gctaaagtgcacttttcccct---tctaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaatttt 18906012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 36449779 - 36449855
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||||| | | ||| ||||||||| |||||||||    
T  36449779 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 36449855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 7899982 - 7899907
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||||||| | ||| |||| |||| ||||||||    
T  7899982 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttggtcccctaagtacagaaactacaatttt 7899907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 434
Target Start/End: Complemental strand, 11938866 - 11938823
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaa 434  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  11938866 ctaactttcaaaaacttgcaattttggtctcctaagtacaaaaa 11938823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 18904368 - 18904444
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| ||||  ||| |||||||||||||| ||||||||||| | | ||| ||||||||| |||||||||    
T  18904368 gctaaagtgcacttttcccc--cct-taactttcaaaaacgtgcaattttggccccttaagtacaaaaactacaattttg 18904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 474
Target Start/End: Original strand, 32739646 - 32739728
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||||||||||||||||||||| | | ||  ||||||||| |||||||||  | || |  |||||||||||||||||||    
T  32739646 ctaactttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttg-gcccccatatacaaaaactacaattttg 32739728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 36450998 - 36450947
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    |||||||||||||||||||||||||||| | ||| |||| |||| |||||||    
T  36450998 taactttcaaaaacttgcaattttggtcccctaagtacagaaactacaattt 36450947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 38840593 - 38840518
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||| | | | ||| ||||||||| ||||||||    
T  38840593 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttagccccctaagtacaaaaactacaatttt 38840518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 13570634 - 13570581
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||||||||||||||| ||| | ||| ||||||||| | |||||||    
T  13570634 taactttcaaaaacttgcaattttagtcccttaagtacaaaaactataattttg 13570581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 21837088 - 21837117
Alignment:
Q  388 cctctaactttcaaaaacttgcaattttgg 417  Q
    ||||||||||||||||||||||||||||||    
T  21837088 cctctaactttcaaaaacttgcaattttgg 21837117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 18300807 - 18300747
Alignment:
Q  386 tccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    |||| |||||||||| |||||||||||||||  | | ||| ||||||||| ||||||||||    
T  18300807 tccccctaactttcataaacttgcaattttgaccccctaagtacaaaaactacaattttga 18300747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 18300784 - 18300748
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  18300784 caattttgaccccctaagtacaaaaactacaattttg 18300748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 18869245 - 18869177
Alignment:
Q  388 cctctaactttcaaaaactt-gcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||||||||| || |||||||||| ||  ||| ||||||||| |||||||| ||| ||||||    
T  18869245 cctctaactttcaaaaatttggcaattttggccttctaagtacaaaaactacaatttttatcccctaag 18869177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 482
Target Start/End: Original strand, 22848232 - 22848276
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttgtctcccta 482  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||    
T  22848232 caattttggtcccctaaatacaaaaactacaattttggctcccta 22848276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 23869604 - 23869560
Alignment:
Q  400 aaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||||||||||||||||| | | ||||||||||||| ||||||||    
T  23869604 aaaaacttgcaattttggccccctaaatacaaaaactacaatttt 23869560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 1824160 - 1824102
Alignment:
Q  387 ccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||    
T  1824160 ccctctaactttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttg 1824102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 1858605 - 1858547
Alignment:
Q  387 ccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||    
T  1858605 ccctctaactttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttg 1858547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 10006345 - 10006421
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||  |||||||||||||||    
T  10006345 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttg 10006421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 24488785 - 24488703
Alignment:
Q  366 gctaaagtgcactt---tccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||    ||||| ||| ||||||||||||||||||||||||||| | | ||||||  |||||||||||||||    
T  24488785 gctaaagtgcacttccccccccccccccctaactttcaaaaacttgcaattttggccccctaaatatcaaaacaacaattttg 24488703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 40471244 - 40471172
Alignment:
Q  368 taaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||| ||||   || ||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||    
T  40471244 taaagtgcacttttcccc---ctttaactttaaaaaacttacaattttggtc-cataaatacaaaaactacaatttt 40471172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 18979220 - 18979144
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| |||| ||   |||||||||| ||||||||||||||| | | |||||| |||||| |||||||||    
T  18979220 gctaaagtgcacttttccccccc---taactttcaacaacttgcaattttggccccctaaatataaaaactacaattttg 18979144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 30568888 - 30568973
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    |||||||||||||||||    |||||||| ||||||||| || |||||||| |||| ||  ||||||||| | |||||||||| ||||||    
T  30568888 gctaaagtgcactttcc----ccctctaagtttcaaaaagttacaattttgatctcttaggtacaaaaactataattttgatcccctaag 30568973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 5514004 - 5514058
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||| ||||||||| | | ||| ||||||||| |||||||||    
T  5514004 ctaactttcaaaaacttccaattttggccccctaagtacaaaaactacaattttg 5514058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 455
Target Start/End: Complemental strand, 10007863 - 10007777
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||||| | | ||| || | |||| ||||||||| || ||||||    
T  10007863 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttggtcccctaag 10007777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 12351922 - 12352008
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||| ||||||||  ||| ||||||||||||| |||||||||||  | | ||| ||||||||| |||||||||| | ||||||    
T  12351922 gctaaagtgcattttccccc--cct-taactttcaaaaatttgcaattttgaccccctaagtacaaaaactacaattttgaccccctaag 12352008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 24483144 - 24483192
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttgg 417  Q
    ||||||||||||||| |||||||   ||| ||||||||||||||||||||||    
T  24483144 gctaaagtgcacttttcccctcc---taattttcaaaaacttgcaattttgg 24483192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 1824138 - 1824102
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    |||||||| || |||||||||||||||||||||||||    
T  1824138 caattttggtcccctaagtacaaaaactacaattttg 1824102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 1858583 - 1858547
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    |||||||| || |||||||||||||||||||||||||    
T  1858583 caattttggtcccctaagtacaaaaactacaattttg 1858547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 12351962 - 12351998
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  12351962 caattttgaccccctaagtacaaaaactacaattttg 12351998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 24123975 - 24123923
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||||||||||||||||||||||||| ||| ||| ||| ||||  ||||||||    
T  24123975 taactttcaaaaacttgcaattttggcctcttaagtactaaaattacaatttt 24123923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 24426173 - 24426100
Alignment:
Q  368 taaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||| | | ||| ||||||||| ||||||||    
T  24426173 taaagtgcactttccccc---ctctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaatttt 24426100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 45150049 - 45149995
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||| | | ||| |||||||||||||||||||    
T  45150049 ctaactttcaaaaacttgcaattttggccccttaagtacaaaaacaacaattttg 45149995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 11437276 - 11437223
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||||||||||||||||||| | ||| ||||||||| |||||||||    
T  11437276 taactttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttg 11437223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 455
Target Start/End: Complemental strand, 23980566 - 23980480
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||||||| ||||   |||||||||| ||||||||||||||||||   | ||| ||||||||| | ||||||| |||||||||    
T  23980566 gctaaagtgcacttttcccc---ctctaactttaaaaaacttgcaattttggctccctaagtacaaaaactataattttggtctcctaag 23980480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 11436043 - 11436119
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| ||||   || |||||||||||||||||||||||||| ||  ||| || |||||| |||||||||    
T  11436043 gctaaagtgcacttttcccc---ctttaactttcaaaaacttgcaattttggccttttaagtataaaaactacaattttg 11436119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 14999307 - 14999364
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatc 448  Q
    ||||||||||||||||||||||||||  | | ||| ||||||||| ||||||||||||    
T  14999307 ctaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgatc 14999364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 41364851 - 41364903
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||||||||||||||| | | ||||||| ||||| |||||||    
T  41364851 ctaactttcaaaaacttgcaattttggccccctaaataccaaaaccacaattt 41364903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 45157308 - 45157232
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    |||||||||||||||||||| |    ||| |||||||||||||||||||||| | | ||  ||||||||| ||||||||||    
T  45157308 gctaaagtgcactttccccccc----taagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttga 45157232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 40384753 - 40384811
Alignment:
Q  396 tttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaa 454  Q
    ||||||||| |||||||||| ||||| ||  ||||||||| |||||||||||| |||||    
T  40384753 tttcaaaaagttgcaattttagtctcctatgtacaaaaactacaattttgatcccctaa 40384811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 52274991 - 52275045
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||  | | ||| ||||||||| |||||||||    
T  52274991 ctaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttg 52275045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 24422824 - 24422877
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||||||||||||||||  | | ||| ||||||||| |||||||||    
T  24422824 taactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttg 24422877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 33088090 - 33088143
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||||||||||||||||| ||||||  |||| |||||| |||||| ||||||||    
T  33088090 ctaactttcaaaaacttgtaatttttatctcctaaatataaaaactacaatttt 33088143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 39221359 - 39221405
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattt 414  Q
    |||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  39221359 gctaaattgcacttttcccc--cctctaactttcaaaaacttgcaattt 39221405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 43378774 - 43378737
Alignment:
Q  437 acaattttgatctcctaagtacaaaaactacaattttg 474  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  43378774 acaattttgatcccctaagtacaaaaattacaattttg 43378737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 52276261 - 52276197
Alignment:
Q  368 taaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaac 435  Q
    |||||||||||||||||||   ||||||||||||||| ||| |||||||| | | ||| |||||||||    
T  52276261 taaagtgcactttccccct---tctaactttcaaaaatttgtaattttggccccctaagtacaaaaac 52276197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 14999325 - 14999361
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  14999325 caattttgaccccctaagtacaaaaactacaattttg 14999361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 24422841 - 24422877
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  24422841 caattttgaccccctaagtacaaaaactacaattttg 24422877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 39222574 - 39222525
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttgg 417  Q
    |||||||||||||||  |||  ||| ||||||||||||||||||||||||||    
T  39222574 gctaaagtgcacttttaccc--cctttaactttcaaaaacttgcaattttgg 39222525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 52275009 - 52275045
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  52275009 caattttgaccccctaagtacaaaaactacaattttg 52275045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 52827348 - 52827395
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttg 416  Q
    ||||||||||||||| |||| ||   |||||||||||||||||||||||||    
T  52827348 gctaaagtgcacttttccccccc---taactttcaaaaacttgcaattttg 52827395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 18371425 - 18371501
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| |||||||   |||||||||||||||||||||||||| | | ||| ||||||||| |||||||||    
T  18371425 gctaaagtgcacttttcccctcc---taactttcaaaaacttgcaattttggccccttaagtacaaaaactacaattttg 18371501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 7501952 - 7501876
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||  |||||||||||||||    
T  7501952 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttg 7501876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 22629484 - 22629563
Alignment:
Q  366 gctaaagtgca-ctttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||  ||||||||||||| ||| ||||||||||||| |||||||| ||| ||| ||||||||| |||||||||    
T  22629484 gctaaagtgcatttttccccctccct-taattttcaaaaacttgtaattttggcctcctaagtacaaaaactacaattttg 22629563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 17782653 - 17782579
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||| ||||| |||||||    
T  17782653 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 17782579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 47369804 - 47369858
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||| | |||||||    
T  47369804 ctaactttcaaaaacttgcaattttagcctcataagtacaaaaactataattttg 47369858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 127359 - 127411
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||||||||||||||||| | ||| ||| ||||| |||||||    
T  127359 ctaactttcaaaaacttgcaattttggtcccctaagtaccaaaaccacaattt 127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 22630529 - 22630477
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||||||||||||||||||||||||| | | ||| ||||||||| ||||||||    
T  22630529 taactttcaaaaacttgcaattttggccccctaattacaaaaactacaatttt 22630477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 31949880 - 31949828
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||||||||||||||| | | ||||||| ||||| |||||||    
T  31949880 ctaactttcaaaaacttgcaattttggccccctaaataccaaaaccacaattt 31949828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 3227694 - 3227620
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||| |||| ||   |||||||||||||||||||||||||| | | ||| ||| ||||| |||||||    
T  3227694 gctaaagtgcacttttccccccc---taactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 3227620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 442
Target Start/End: Original strand, 47524544 - 47524599
Alignment:
Q  387 ccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatt 442  Q
    ||||||||||||||||||||||||||||||| | | ||| ||| ||||| ||||||    
T  47524544 ccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatt 47524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 47525467 - 47525421
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaatttt 415  Q
    ||||||||||||||| ||||   |||||||||||||||||||||||||||    
T  47525467 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaatttt 47525421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 18372535 - 18372481
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||| |||||||||||||||||||||| | | ||| ||||||||| |||||||||    
T  18372535 ctaattttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 18372481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 42886384 - 42886311
Alignment:
Q  368 taaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||| | |||||   ||||||||||||| |||||||||||  | | ||||||||||||| ||||||||    
T  42886384 taaagtgcacttttctcctcc---taactttcaaaaatttgcaattttgaccccctaaatacaaaaactacaatttt 42886311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 31659663 - 31659700
Alignment:
Q  437 acaattttgatctcctaagtacaaaaactacaattttg 474  Q
    |||||||||| | |||||||||||||||||||||||||    
T  31659663 acaattttgaccccctaagtacaaaaactacaattttg 31659700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 43899470 - 43899523
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||| |||  |||||| |||||  |||||||||    
T  43899470 taactttcaaaaacttgcaattttgatcttctaaatataaaaattacaattttg 43899523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 3227109 - 3227182
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    |||||||||||||||||||| |    ||| |||||||||||||||||||||| | | ||| ||| ||||| |||||||    
T  3227109 gctaaagtgcactttccccccc----taattttcaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 3227182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 31659623 - 31659700
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||||||  ||| ||||  ||||||||||||||| ||||||||  | | ||| ||||||||| |||||||||    
T  31659623 gctaaagtgcacttttaccccccct--aactttcaaaaacttacaattttgaccccctaagtacaaaaactacaattttg 31659700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 31661109 - 31661062
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttg 416  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||    
T  31661109 gctaaagtgcactttcccct---ctctaactttcaaaaatttgcaattttg 31661062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 446
Target Start/End: Original strand, 12700176 - 12700251
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||||| | | ||| ||||||||| ||||||||||    
T  12700176 gctaaagtgcactttccccc-----ctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttga 12700251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 8456495 - 8456554
Alignment:
Q  386 tccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||| |||| |||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  8456495 tccccctaattttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttg 8456554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 29932798 - 29932722
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||||||||| ||||||||||    
T  29932798 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttgg-cccctaagtacaaaaactacaattttga 29932722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 29981952 - 29981876
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||||||||| ||||||||||    
T  29981952 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttgg-cccctaagtacaaaaactacaattttga 29981876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 54539779 - 54539842
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||||||||||||||||   | | ||||||||||||| |||||||||||| ||||||    
T  54539779 taactttcaaaaacttgcaattttaaccccctaaatacaaaaactacaattttgatcccctaag 54539842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 29931249 - 29931303
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||| | | | ||||||||||||| |||||||||    
T  29931249 ctaactttcaaaaacttgcaatttttgccccctaaatacaaaaactacaattttg 29931303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 29980403 - 29980457
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||| | | | ||||||||||||| |||||||||    
T  29980403 ctaactttcaaaaacttgcaatttttgccccctaaatacaaaaactacaattttg 29980457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 47614204 - 47614262
Alignment:
Q  387 ccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||||||| | | ||| ||  |||||||||||||||    
T  47614204 ccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttg 47614262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 443
Target Start/End: Complemental strand, 47610678 - 47610606
Alignment:
Q  368 taaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||| ||||| |||||||    
T  47610678 taaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 47610606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 7268905 - 7268841
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||||||||||||||||||| ||| ||| || | |||| |||||||||  ||||||||    
T  7268905 ctaactttcaaaaacttgcaattttggcctcctaagtatagaaactacaattttggcctcctaag 7268841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 54540890 - 54540814
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||||  | | ||| ||||||||| |||||||||    
T  54540890 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttg 54540814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 12703583 - 12703524
Alignment:
Q  386 tccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||| ||| |||||||| | | ||| ||||||||| |||||||||    
T  12703583 tccctctaactttcaaaaatttgtaattttggccccctaagtacaaaaactacaattttg 12703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 534518 - 534576
Alignment:
Q  387 ccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||| |||||||||||||||||||  ||| ||  ||||||||| |||||||||    
T  534518 ccctctaactctcaaaaacttgcaattttgacctcctatgtacaaaaactacaattttg 534576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 446
Target Start/End: Original strand, 19984850 - 19984927
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    ||||||||||||||| |||| ||   ||| |||||||||||||||||||||| | | ||  ||||||||| ||||||||||    
T  19984850 gctaaagtgcacttttccccccc---taagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttga 19984927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 7267667 - 7267720
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||||||||||||||||| | | ||| |||| |||| |||||||||    
T  7267667 taactttcaaaaacttgcaattttggccccctaagtacagaaactacaattttg 7267720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 55192072 - 55192019
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||||||||||||||||| |   ||| ||||||||| |||||||||    
T  55192072 taactttcaaaaacttgcaattttggccctctaagtacaaaaactacaattttg 55192019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 534540 - 534576
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  534540 caattttgacctcctatgtacaaaaactacaattttg 534576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 419
Target Start/End: Complemental strand, 535860 - 535832
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtc 419  Q
    |||||||||||||||||||||||||||||    
T  535860 ctaactttcaaaaacttgcaattttggtc 535832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 4271464 - 4271516
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||| ||| ||||||| |||| |||||| |||||| ||||||||    
T  4271464 taactttcaaaaatttgtaattttgatctcttaaatataaaaactacaatttt 4271516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 6170296 - 6170348
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||||||||||||||| || | ||| ||||||||  ||||||||    
T  6170296 taactttcaaaaacttgcaattttgatcccttaagtacaaaaattacaatttt 6170348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 6249633 - 6249685
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||||||||||||||  || | ||| ||||||||| ||||||||    
T  6249633 taactttcaaaaacttgcaattttaatcccttaagtacaaaaactacaatttt 6249685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 7758426 - 7758478
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||||||||||||||||||||||||  | | ||| ||||||||| ||||||||    
T  7758426 taactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaatttt 7758478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 47615648 - 47615600
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttgg 417  Q
    ||||||||||||||| ||||  ||| ||||||||||||||||||||||||||    
T  47615648 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttgg 47615600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 26421721 - 26421645
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    ||||||||||||||| |    ||||||||||||||||||||||||||||||  ||| ||| ||||||||| ||||||||||    
T  26421721 gctaaagtgcacttttc----ccctctaactttcaaaaacttgcaattttgacctcctaagtacaaaaactacaattttga 26421645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 17383015 - 17383069
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||    
T  17383015 ctaactttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttg 17383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 12129626 - 12129701
Alignment:
Q  368 taaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    ||||||||||||| ||||||    |||||||||||||||||||||||||| | | ||| ||||||||| ||||||||||    
T  12129626 taaagtgcacttttcccctct---taactttcaaaaacttgcaattttggccccgtaagtacaaaaactacaattttga 12129701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 25685922 - 25685848
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||| ||||| |||||||    
T  25685922 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 25685848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 17388310 - 17388235
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| |    ||| ||||||||||||||||||||||||||||| | ||| |||| |||| |||||||||    
T  17388310 gctaaagtgcacttttc----ccccctaactttcaaaaacttgcaattttggtcccttaagtacataaactacaattttg 17388235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 49308126 - 49308051
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| |    ||| ||||||||||||||||||||||||||| | | ||| ||||||||| |||||||||    
T  49308126 gctaaagtgcacttttc----ccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 49308051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 52491684 - 52491631
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||||||   |||||||| |||| |||||||||    
T  52491684 taactttcaaaaacttgcaattttggtcctctaaatacagaaactacaattttg 52491631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 26421682 - 26421646
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| |||||||||||||||||||||||||||    
T  26421682 caattttgacctcctaagtacaaaaactacaattttg 26421646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 444
Target Start/End: Original strand, 1963197 - 1963272
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    ||||||||||||||| ||||  ||| ||||||||||||| |||||||||||| ||| ||  ||||||||| ||||||||    
T  1963197 gctaaagtgcacttttcccc--cct-taactttcaaaaagttgcaattttggcctcctatgtacaaaaactacaatttt 1963272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 31601067 - 31601008
Alignment:
Q  387 ccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    |||||||||||| |||||||||||||||||  | | ||| ||||||||| ||||||||||    
T  31601067 ccctctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttga 31601008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 48781145 - 48781095
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtc 419  Q
    ||||||||||||||| ||||   |||||||||||||||| ||||||||||||||    
T  48781145 gctaaagtgcacttttcccc---ctctaactttcaaaaatttgcaattttggtc 48781095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 5526225 - 5526178
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttgg 417  Q
    ||||||||||||||| |    |||||||||||||||||||||||||||||||    
T  5526225 gctaaagtgcacttttc----ccctctaactttcaaaaacttgcaattttgg 5526178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 10471488 - 10471414
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||||| | | ||| ||| ||||| |||||||    
T  10471488 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 10471414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 13386633 - 13386558
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    |||||||||||||||  ||| ||||  ||||||||||||||||||||||||  | ||||| ||| ||||| |||||||    
T  13386633 gctaaagtgcactttttccccccct--aactttcaaaaacttgcaattttgaccccataagtaccaaaaccacaattt 13386558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 8758914 - 8758861
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||||||||||||||||| | | ||| |||| |||| |||||||||    
T  8758914 taactttcaaaaacttgcaattttggccccctaagtacagaaactacaattttg 8758861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 19750653 - 19750600
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||||||| |||||||||||||||||| | | ||| ||||||||| ||||||||    
T  19750653 ctaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaatttt 19750600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 19789153 - 19789206
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||||||| |||||||||||||||||| | | ||| ||||||||| ||||||||    
T  19789153 ctaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaatttt 19789206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 13386015 - 13386090
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaa-acttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||| ||||   ||||||||||||||| |||||||||||||| | | ||| ||| ||||| |||||||    
T  13386015 gctaaagtgcacttttcccc---ctctaactttcaaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 13386090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 25684935 - 25684982
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttg 416  Q
    ||||||||||||||| |||| ||   |||||||||||||||||||||||||    
T  25684935 gctaaagtgcacttttccccccc---taactttcaaaaacttgcaattttg 25684982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 31599812 - 31599876
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    |||||||| |||||||||||||||||  | | ||| ||||||||| ||||||||| || ||||||    
T  31599812 ctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggtcccctaag 31599876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 31599830 - 31599866
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  31599830 caattttgaccccctaagtacaaaaactacaattttg 31599866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 31601045 - 31601009
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  31601045 caattttgaccccctaagtacaaaaactacaattttg 31601009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 445
Target Start/End: Original strand, 49306799 - 49306851
Alignment:
Q  393 aactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||||||||||||| |   ||| ||||||||| |||||||||    
T  49306799 aactttcaaaaacttgcaattttggccatttaagtacaaaaactacaattttg 49306851  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 7314881 - 7314966
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||  |||||||||||||||| | ||||||    
T  7314881 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttgg-cccctaagtatcaaaacaacaattttgaccccctaag 7314966  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 8659266 - 8659340
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||| ||||| |||||||    
T  8659266 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 8659340  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 8821874 - 8821948
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||| | | ||| ||| ||||| |||||||    
T  8821874 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 8821948  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 16704597 - 16704518
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatc 448  Q
    ||||||||||||||| ||  ||||| |||||||||||||||||||||||||  | | ||| ||||||||| ||||||||||||    
T  16704597 gctaaagtgcacttttcc--tccct-taactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgatc 16704518  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 16703586 - 16703643
Alignment:
Q  386 tccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaatttt 444  Q
    |||| ||| |||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  16703586 tccccctatctttcaaaaacttgcaattttgatc-cataaatacaaaaactacaatttt 16703643  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 3721613 - 3721660
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttg 416  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||    
T  3721613 gctaaagtgcacttttcccc---ctctaactttcaaaaacttgcaattttg 3721660  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 8660303 - 8660256
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttg 416  Q
    ||||||||||||||| |||||||   |||||||||||||||||||||||||    
T  8660303 gctaaagtgcacttttcccctcc---taactttcaaaaacttgcaattttg 8660256  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 17496794 - 17496844
Alignment:
Q  366 gctaaagtgcacttt-ccccctccctctaactttcaaaaacttgcaatttt 415  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||| |||||||    
T  17496794 gctaaagtgcatttttccccctccccctaactttcaaaaacttacaatttt 17496844  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 7316394 - 7316346
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttgg 417  Q
    ||||||||||||||| ||||  ||| ||||||||||||||||||||||||||    
T  7316394 gctaaagtgcacttttcccc--cct-taactttcaaaaacttgcaattttgg 7316346  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 16704557 - 16704521
Alignment:
Q  438 caattttgatctcctaagtacaaaaactacaattttg 474  Q
    ||||||||| | |||||||||||||||||||||||||    
T  16704557 caattttgaccccctaagtacaaaaactacaattttg 16704521  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 416
Target Start/End: Original strand, 26574639 - 26574667
Alignment:
Q  388 cctctaactttcaaaaacttgcaattttg 416  Q
    |||||||||||||||||||||||||||||    
T  26574639 cctctaactttcaaaaacttgcaattttg 26574667  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 26575134 - 26575078
Alignment:
Q  389 ctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    |||||||||||||||||||||||||||   | | ||| ||||||||| |||||||||    
T  26575134 ctctaactttcaaaaacttgcaattttaaccccttaagtacaaaaactacaattttg 26575078  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 34834657 - 34834605
Alignment:
Q  391 ctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattt 443  Q
    |||||||||||||||||||||||||| |||| ||| ||  ||||| |||||||    
T  34834657 ctaactttcaaaaacttgcaattttgatctcctaagtatcaaaaccacaattt 34834605  T

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Target: scaffold2034 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 234 - 320
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttgatctcctaag 455  Q
    ||||||||||||||||||||  ||| ||||||||||||| |||||||||||||| | ||  ||||||||| | ||||||| || ||||||    
T  234 gctaaagtgcactttccccc--cct-taactttcaaaaagttgcaattttggtcccctatgtacaaaaactataattttggtcccctaag 320  T

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Target: scaffold0059 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 4829 - 4753
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttga 446  Q
    ||||||||||||||||||  |||||  |||||| |||||| ||||||||||| | | |||||||| |||| ||||||||||    
T  4829 gctaaagtgcactttccc--tccct--aacttttaaaaacatgcaattttggccccctaaatacagaaactacaattttga 4753  T

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Target: scaffold0302 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 17494 - 17547
Alignment:
Q  392 taactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||| |||||||||||||||||| | | ||| ||||||||| |||||||||    
T  17494 taacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 17547  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 5538 - 5462
Alignment:
Q  366 gctaaagtgcactttccccctccctctaactttcaaaaacttgcaattttggtctcataaatacaaaaacaacaattttg 445  Q
    ||||||||||||||| |||| ||   ||| |||||||||||||||||||||  | | ||| ||||||||| |||||||||    
T  5538 gctaaagtgcacttttccccccc---taattttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttg 5462  T

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