View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21462_low_31 (Length: 224)
Name: NF21462_low_31
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21462_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 47107164 - 47107353
Alignment:
| Q |
22 |
aaaggaaaaaatagagtatatccaaatggttcaaaccatgattgataatcaaaatcaaagctataaagtgaagagaggtaatagtaacttcagatctatc |
121 |
Q |
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| T |
47107164 |
aaagggaaaaatagagtatatccaaatggttcaaaacatgattgataatctaaatcaaagctacaaagtgaagagaggtaatagtaacttcagatctatc |
47107263 |
T |
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| Q |
122 |
aatatctcaaaagctacaacaccagctcactgtg-ttaccacaaaataat--taac-aaaccataaaatcacaaaaatcaaagattgtta |
207 |
Q |
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| T |
47107264 |
aatatctcaaaagctacaacaccagctcactgtgtttaccacaaaataataataacaaaaccataaaatcacaaaaatcaaagattgtta |
47107353 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 6815779 - 6815819
Alignment:
| Q |
42 |
tccaaatggttcaaaccatgattgataatcaaaatcaaagc |
82 |
Q |
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| T |
6815779 |
tccaaatggttcaaacaatgattgataatcaaagtcaaagc |
6815819 |
T |
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