View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21462_low_5 (Length: 449)

Name: NF21462_low_5
Description: NF21462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21462_low_5
NF21462_low_5
[»] chr1 (41 HSPs)
chr1 (17-441)||(47651507-47651930)
chr1 (375-443)||(50011499-50011567)
chr1 (376-441)||(50065003-50065068)
chr1 (376-443)||(34702348-34702415)
chr1 (377-443)||(24134659-24134725)
chr1 (376-443)||(27054683-27054750)
chr1 (376-442)||(40061436-40061502)
chr1 (376-441)||(15417854-15417919)
chr1 (379-443)||(14262756-14262820)
chr1 (376-443)||(22386271-22386338)
chr1 (376-443)||(25421847-25421914)
chr1 (380-443)||(43109273-43109336)
chr1 (376-438)||(49619965-49620027)
chr1 (376-441)||(2017721-2017786)
chr1 (373-441)||(48497250-48497318)
chr1 (385-443)||(30735830-30735888)
chr1 (376-428)||(39304253-39304305)
chr1 (392-443)||(50302885-50302937)
chr1 (385-441)||(52164408-52164464)
chr1 (379-442)||(7438617-7438680)
chr1 (376-443)||(8893853-8893920)
chr1 (376-423)||(15550879-15550926)
chr1 (376-430)||(12973326-12973380)
chr1 (379-428)||(23368782-23368831)
chr1 (375-444)||(24253677-24253746)
chr1 (387-443)||(19424050-19424106)
chr1 (380-444)||(22853795-22853859)
chr1 (393-441)||(25031534-25031582)
chr1 (375-423)||(35527390-35527438)
chr1 (379-443)||(47428930-47428994)
chr1 (380-443)||(10123088-10123150)
chr1 (391-442)||(30325078-30325129)
chr1 (395-442)||(42937265-42937312)
chr1 (376-426)||(4126892-4126942)
chr1 (379-429)||(12148622-12148672)
chr1 (377-431)||(25585353-25585407)
chr1 (401-443)||(47683671-47683713)
chr1 (376-441)||(4684214-4684279)
chr1 (392-444)||(27160504-27160556)
chr1 (376-412)||(29332279-29332315)
chr1 (379-411)||(44583584-44583616)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-231)||(169001-169208)
[»] chr4 (36 HSPs)
chr4 (376-443)||(27862866-27862933)
chr4 (376-443)||(46283115-46283182)
chr4 (376-443)||(50815700-50815767)
chr4 (374-443)||(36993032-36993101)
chr4 (379-443)||(16556447-16556511)
chr4 (376-444)||(51974740-51974808)
chr4 (376-443)||(13210199-13210266)
chr4 (376-443)||(23448966-23449033)
chr4 (377-443)||(40406995-40407062)
chr4 (376-428)||(8716547-8716599)
chr4 (388-444)||(19687628-19687684)
chr4 (388-443)||(52366212-52366267)
chr4 (376-426)||(8716442-8716492)
chr4 (388-442)||(22096427-22096481)
chr4 (379-443)||(43362203-43362267)
chr4 (387-443)||(45847961-45848017)
chr4 (380-444)||(51707117-51707181)
chr4 (376-443)||(2832106-2832173)
chr4 (392-443)||(25234893-25234944)
chr4 (385-440)||(49594146-49594201)
chr4 (385-443)||(11491254-11491312)
chr4 (379-429)||(31261753-31261803)
chr4 (385-443)||(42154568-42154626)
chr4 (392-443)||(24253143-24253194)
chr4 (396-443)||(24570223-24570270)
chr4 (392-443)||(45355752-45355803)
chr4 (392-443)||(45369493-45369544)
chr4 (377-443)||(38690660-38690726)
chr4 (376-426)||(41971351-41971401)
chr4 (385-438)||(23233989-23234042)
chr4 (380-429)||(35909078-35909127)
chr4 (380-441)||(43084444-43084505)
chr4 (387-428)||(48240410-48240451)
chr4 (376-425)||(49635425-49635474)
chr4 (379-443)||(26885435-26885499)
chr4 (374-414)||(37574264-37574304)
[»] chr8 (35 HSPs)
chr8 (377-443)||(1032564-1032630)
chr8 (376-444)||(30466672-30466740)
chr8 (376-443)||(13906661-13906728)
chr8 (376-443)||(41454862-41454929)
chr8 (379-444)||(38289269-38289334)
chr8 (376-443)||(4259852-4259919)
chr8 (376-443)||(10161957-10162024)
chr8 (376-443)||(44828468-44828535)
chr8 (374-444)||(8350427-8350497)
chr8 (385-443)||(36103957-36104015)
chr8 (376-442)||(23139067-23139133)
chr8 (385-443)||(40103524-40103582)
chr8 (376-441)||(19733106-19733171)
chr8 (380-443)||(22652680-22652743)
chr8 (374-429)||(34037997-34038052)
chr8 (376-435)||(38063970-38064029)
chr8 (392-443)||(39104616-39104667)
chr8 (380-443)||(41845464-41845527)
chr8 (385-443)||(1360169-1360227)
chr8 (377-443)||(5904409-5904475)
chr8 (376-442)||(16973016-16973081)
chr8 (376-441)||(12831563-12831628)
chr8 (387-444)||(29114106-29114163)
chr8 (401-441)||(43413923-43413963)
chr8 (393-443)||(45536728-45536778)
chr8 (404-444)||(31153505-31153545)
chr8 (385-425)||(38544977-38545017)
chr8 (392-443)||(280032-280082)
chr8 (392-443)||(635770-635820)
chr8 (392-443)||(821573-821623)
chr8 (376-443)||(36587685-36587752)
chr8 (379-441)||(12927802-12927864)
chr8 (376-414)||(32822109-32822147)
chr8 (385-443)||(43456687-43456745)
chr8 (385-430)||(11052632-11052677)
[»] chr3 (33 HSPs)
chr3 (378-443)||(47864631-47864696)
chr3 (376-443)||(33528240-33528307)
chr3 (376-443)||(46247253-46247320)
chr3 (376-443)||(30162650-30162717)
chr3 (376-443)||(46798575-46798642)
chr3 (377-443)||(25165434-25165500)
chr3 (376-441)||(50381707-50381772)
chr3 (379-443)||(39739270-39739334)
chr3 (376-443)||(2259150-2259217)
chr3 (376-442)||(11483606-11483672)
chr3 (376-442)||(16141389-16141455)
chr3 (377-443)||(29226320-29226386)
chr3 (385-443)||(31419585-31419643)
chr3 (375-443)||(8258144-8258212)
chr3 (376-443)||(27817102-27817169)
chr3 (380-431)||(34225192-34225243)
chr3 (376-443)||(36590383-36590450)
chr3 (376-443)||(55426107-55426174)
chr3 (392-441)||(9320996-9321045)
chr3 (376-436)||(985961-986021)
chr3 (391-443)||(27471512-27471564)
chr3 (376-444)||(32421341-32421409)
chr3 (392-444)||(33780312-33780364)
chr3 (401-444)||(31435535-31435578)
chr3 (392-443)||(37756448-37756499)
chr3 (376-442)||(42913431-42913497)
chr3 (388-430)||(45510788-45510830)
chr3 (376-429)||(1084077-1084130)
chr3 (376-443)||(166781-166848)
chr3 (376-414)||(49429454-49429492)
chr3 (406-443)||(44062076-44062113)
chr3 (391-431)||(33830415-33830455)
chr3 (387-443)||(38869226-38869282)
[»] scaffold0031 (3 HSPs)
scaffold0031 (160-228)||(93816-93884)
scaffold0031 (243-321)||(94058-94137)
scaffold0031 (63-140)||(93733-93810)
[»] chr7 (33 HSPs)
chr7 (376-443)||(40273814-40273881)
chr7 (18-231)||(16179871-16180079)
chr7 (376-437)||(34322065-34322126)
chr7 (375-443)||(24029977-24030045)
chr7 (376-443)||(1575687-1575754)
chr7 (380-443)||(42554631-42554694)
chr7 (376-443)||(48433745-48433812)
chr7 (387-443)||(12166086-12166142)
chr7 (376-444)||(46266661-46266729)
chr7 (376-443)||(23824626-23824693)
chr7 (376-443)||(31793461-31793528)
chr7 (374-443)||(36528254-36528323)
chr7 (377-441)||(42338284-42338348)
chr7 (379-444)||(27454007-27454072)
chr7 (376-428)||(26456055-26456107)
chr7 (395-443)||(38378231-38378279)
chr7 (376-443)||(3902309-3902375)
chr7 (388-443)||(3961443-3961498)
chr7 (396-443)||(4956127-4956174)
chr7 (376-443)||(33248837-33248904)
chr7 (374-443)||(14707284-14707352)
chr7 (376-428)||(28712361-28712413)
chr7 (376-443)||(15025149-15025216)
chr7 (376-443)||(44986587-44986654)
chr7 (376-443)||(46570006-46570073)
chr7 (379-434)||(48619793-48619848)
chr7 (376-442)||(8249698-8249764)
chr7 (385-443)||(24315388-24315446)
chr7 (387-417)||(37918684-37918714)
chr7 (395-441)||(43440701-43440747)
chr7 (385-429)||(3889850-3889894)
chr7 (407-443)||(7608758-7608794)
chr7 (387-443)||(35661180-35661236)
[»] chr6 (21 HSPs)
chr6 (376-443)||(6228295-6228362)
chr6 (376-443)||(15717048-15717115)
chr6 (387-443)||(1128454-1128510)
chr6 (377-441)||(21874258-21874322)
chr6 (393-443)||(29322011-29322061)
chr6 (376-443)||(18903402-18903469)
chr6 (392-442)||(9357165-9357215)
chr6 (385-443)||(24794930-24794988)
chr6 (386-443)||(19748102-19748159)
chr6 (376-443)||(4854341-4854408)
chr6 (377-443)||(20415597-20415663)
chr6 (380-438)||(25045737-25045795)
chr6 (376-443)||(5948858-5948925)
chr6 (376-443)||(11552864-11552931)
chr6 (379-442)||(30422144-30422207)
chr6 (385-440)||(31637346-31637401)
chr6 (376-442)||(3974435-3974500)
chr6 (385-429)||(7954971-7955016)
chr6 (378-442)||(17216953-17217017)
chr6 (376-441)||(18618576-18618641)
chr6 (375-443)||(7273043-7273111)
[»] chr5 (26 HSPs)
chr5 (376-443)||(38503292-38503359)
chr5 (377-443)||(31250141-31250207)
chr5 (376-443)||(12375447-12375514)
chr5 (385-443)||(43227868-43227926)
chr5 (376-444)||(930972-931040)
chr5 (375-442)||(5039673-5039739)
chr5 (376-443)||(15470656-15470723)
chr5 (379-443)||(15106922-15106986)
chr5 (392-440)||(15696216-15696264)
chr5 (392-443)||(1572119-1572170)
chr5 (376-442)||(87784-87850)
chr5 (385-443)||(17077363-17077421)
chr5 (392-445)||(42643836-42643889)
chr5 (376-429)||(43263206-43263259)
chr5 (387-443)||(462010-462066)
chr5 (376-443)||(4395886-4395953)
chr5 (376-419)||(13576316-13576359)
chr5 (376-418)||(1984249-1984291)
chr5 (385-443)||(5263171-5263229)
chr5 (405-443)||(29530796-29530834)
chr5 (376-441)||(3294076-3294141)
chr5 (385-418)||(7608123-7608156)
chr5 (392-429)||(33545435-33545472)
chr5 (379-428)||(42208913-42208962)
chr5 (401-441)||(26671601-26671641)
chr5 (401-441)||(26943198-26943238)
[»] scaffold0001 (1 HSPs)
scaffold0001 (376-443)||(419705-419772)
[»] scaffold0018 (1 HSPs)
scaffold0018 (376-443)||(121834-121901)
[»] chr2 (16 HSPs)
chr2 (376-442)||(25553181-25553247)
chr2 (377-443)||(43027149-43027215)
chr2 (379-443)||(18949719-18949783)
chr2 (376-443)||(11069380-11069447)
chr2 (374-429)||(34107486-34107541)
chr2 (385-427)||(6866510-6866552)
chr2 (380-430)||(16403522-16403572)
chr2 (392-443)||(466774-466825)
chr2 (376-443)||(3330236-3330303)
chr2 (395-442)||(17543126-17543173)
chr2 (377-428)||(31149151-31149202)
chr2 (378-442)||(18424188-18424249)
chr2 (376-443)||(19843398-19843465)
chr2 (380-443)||(27463561-27463624)
chr2 (385-442)||(33065293-33065350)
chr2 (379-443)||(32084841-32084905)
[»] scaffold0204 (1 HSPs)
scaffold0204 (385-419)||(10578-10612)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 47651507 - 47651930
Alignment:
Q  17 atgaatctgcaaaatactttagctttgctcggtctctcttgttaattccattgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtattat 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47651507 atgaatctgcaaaatactttagctttgctcggtctttcttgttaattccattgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtattat 47651606  T
Q  117 tggagtaggaggagataatgggtatcaggtactcaagagtcaagagaaagtgctcaaccaaaattattttagcgctaaacaataccgccaaattttcatt 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47651607 tggagtaggaggagataatgggtatcagttactcaagagtcaagagaaagtgctcaaccaaaattattttagcgctaaacaataccgccaaattttcatt 47651706  T
Q  217 aaaattgtaattctactaaaattgttttatttttgttattatccttcaaaaataaaagtttatggttattataaatatcatagataagtttttggttaga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47651707 aaaattgtaattctactaaaattgttttatttttgttattatccttcaaaaataaaagtttatggttattataaatatcatagataagtttttggttaga 47651806  T
Q  317 taaatnnnnnnnnnntgtataattggttctctccatcgctagttaatagtgttcagctcgtccccataagcttaactcatttgataagggataatgcaca 416  Q
    |||||          |||||||||||||||||| ||||||| |||||||| |||||||||| ||||| |||||| |||||||| ||||||||||||||||    
T  47651807 taaataaaaaaaaaatgtataattggttctctctatcgctaattaatagtcttcagctcgt-cccatgagcttagctcatttggtaagggataatgcaca 47651905  T
Q  417 atatgtgcaggggctggggttcgaa 441  Q
    |||||||||||||||||||||||||    
T  47651906 atatgtgcaggggctggggttcgaa 47651930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 50011499 - 50011567
Alignment:
Q  375 cgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50011499 cgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaacc 50011567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 50065003 - 50065068
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  50065003 gtccccataagcttagctcatttgataagggataatgcacaatatgtgcagggaccggggttcgaa 50065068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 34702415 - 34702348
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  34702415 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 34702348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 24134725 - 24134659
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  24134725 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 24134659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 27054683 - 27054750
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  27054683 gtccccatgagcttagctcatttggtaagggataatgcacaatatctgcaggggccggggttcgaacc 27054750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 40061436 - 40061502
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||||||    
T  40061436 gtccccatgagcttaactcatttggtaagggatagtgcacaatatgtataggggctggggttcgaac 40061502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 15417919 - 15417854
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||||| |||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  15417919 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgtaggggctggggttcgaa 15417854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 14262820 - 14262756
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  14262820 cccatgagattaactcatttgataagggataatgcacaatatatgcaggggtcggggttcgaacc 14262756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 22386338 - 22386271
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||  |||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  22386338 gtccccacgagcttagctcatttggtaagggattatgcacaatatgtgcaggggttggggttcgaacc 22386271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 25421847 - 25421914
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| ||||||||||||||| ||||||| |||||||||| |||| |||||||||||||| ||||    
T  25421847 gtccccatgagcttaactcatttggtaagggacaatgcacaatttgtgtaggggctggggttcaaacc 25421914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 43109336 - 43109273
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  43109336 ccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccggggttcgaacc 43109273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 49619965 - 49620027
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttc 438  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||  |||||||    
T  49619965 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttc 49620027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 2017786 - 2017721
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||| ||| |||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  2017786 gtcctcatgagcttagctcatttggtaagggataatgcacaatatgtgcataggctggggttcgaa 2017721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 48497318 - 48497250
Alignment:
Q  373 ctcgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||| ||||| || ||| |||||||| |||||||||||||||||||||||||||||| || |||||||    
T  48497318 ctcgttcccatgagtttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcgaa 48497250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 30735830 - 30735888
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| || ||| |||||    
T  30735830 agcttaactcatttggtaagggataatgcacaatttgtgcaggggccggagtttgaacc 30735888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 39304305 - 39304253
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggg 428  Q
    |||||||| |||||| |||||||| |||||||||||||| |||||||||||||    
T  39304305 gtccccatgagcttagctcatttggtaagggataatgcataatatgtgcaggg 39304253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 50302937 - 50302885
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcag-gggctggggttcgaacc 443  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  50302937 ctcatttggtaagggataatgcataatatgtgcagagggctggggttcgaacc 50302885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 52164464 - 52164408
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||||||||||||| |||| |||||||||||||||||||||||   ||||||||||    
T  52164464 agcttaactcatttggtaagagataatgcacaatatgtgcagggatcggggttcgaa 52164408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 7438617 - 7438680
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    ||||| |||||| |||||||| |||||||||||||||||| |||| |||||  |||||||||||    
T  7438617 cccatgagcttagctcatttggtaagggataatgcacaatttgtgtaggggtcggggttcgaac 7438680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 8893853 - 8893920
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||| ||||||  ||||||| |||||||||||||||||||||| ||||||  ||||||||||||    
T  8893853 gtccacatgagcttagttcatttggtaagggataatgcacaatatgtacaggggtcggggttcgaacc 8893920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 15550879 - 15550926
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtg 423  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||    
T  15550879 gtccccatgagcttatctcatttggtaagggataatgcacaatatgtg 15550926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 430
Target Start/End: Complemental strand, 12973380 - 12973326
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggc 430  Q
    |||||||| || ||| |||||||| |||||||||||||||||||| |||||||||    
T  12973380 gtccccatgagtttagctcatttggtaagggataatgcacaatatatgcaggggc 12973326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 23368831 - 23368782
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggg 428  Q
    ||||| |||||| ||||||||||||||||||||||||| | |||||||||    
T  23368831 cccatgagcttagctcatttgataagggataatgcacattttgtgcaggg 23368782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 24253746 - 24253677
Alignment:
Q  375 cgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    ||||||||| |||||| |||| |||||||||||||||||| ||| | ||||||||  ||| |||||||||    
T  24253746 cgtccccatgagcttagctcacttgataagggataatgcataatttatgcaggggtcgggattcgaacct 24253677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 19424050 - 19424106
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||||||||||||||||||||||| | ||| ||||||||  ||||||||||||    
T  19424050 cttagctcatttgataagggataatgcatattatatgcaggggtcggggttcgaacc 19424106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 22853859 - 22853795
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||| ||||||||||||||||||||||||||| || |  || || |||||||| |||||||||||    
T  22853859 ccatgagcttaactcatttgataagggataatacatagaatatgtaggggctgaggttcgaacct 22853795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 25031582 - 25031534
Alignment:
Q  393 tcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||||| |||| ||||||||| ||||||||||||||| ||||||||||    
T  25031582 tcatttggtaagagataatgcataatatgtgcaggggccggggttcgaa 25031534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 35527438 - 35527390
Alignment:
Q  375 cgtccccataagcttaactcatttgataagggataatgcacaatatgtg 423  Q
    ||||||||| | |||| |||||||| |||||||||||||||||||||||    
T  35527438 cgtccccatgaacttagctcatttggtaagggataatgcacaatatgtg 35527390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 47428994 - 47428930
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| || ||| ||||| || ||||||||| | ||||||||||||| |||||||||||||||||    
T  47428994 cccatgagtttagctcatctggtaagggatagtacacaatatgtgcatgggctggggttcgaacc 47428930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 10123150 - 10123088
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||||||||||||||| |||||||||||  |||||||||| |||||  ||||||||||||    
T  10123150 ccatgagcttaactcatttggtaagggataat-tacaatatgtgtaggggtcggggttcgaacc 10123088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 30325129 - 30325078
Alignment:
Q  391 actcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||||||||||||||||||| |||||||| ||||| || || ||||||    
T  30325129 actcatttgataagggataatgcataatatgtgtaggggttgaggctcgaac 30325078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 442
Target Start/End: Complemental strand, 42937312 - 42937265
Alignment:
Q  395 atttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    ||||| ||||| ||||||||||||||||||||||| ||| ||||||||    
T  42937312 atttggtaaggaataatgcacaatatgtgcaggggttggagttcgaac 42937265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 4126892 - 4126942
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcag 426  Q
    |||||||| || ||| |||||||| |||||||||||||||||||| |||||    
T  4126892 gtccccatgagtttagctcatttggtaagggataatgcacaatatatgcag 4126942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 12148672 - 12148622
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcagggg 429  Q
    ||||| |||||| ||||||| ||||| ||||||| ||||||||||||||||    
T  12148672 cccatgagcttagctcattttataagcgataatgtacaatatgtgcagggg 12148622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 25585407 - 25585353
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggct 431  Q
    ||||||| ||||||  ||||||| ||| |||| ||||||||||||||||||||||    
T  25585407 tccccatgagcttagttcatttggtaaaggatgatgcacaatatgtgcaggggct 25585353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 47683671 - 47683713
Alignment:
Q  401 taagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||||||||||||||||| ||| || |||||||||    
T  47683671 taagggataatgcacaatatgtgcagaggccggagttcgaacc 47683713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 4684279 - 4684214
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||||  |||||| |||||||| |||||||||||| ||||||| || |||||  ||||||||||    
T  4684279 gtccccacgagcttacctcatttggtaagggataatgtacaatatatgtaggggtcggggttcgaa 4684214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 27160504 - 27160556
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||  |||||||||||||| ||||| ||||||||||  |||||||||||    
T  27160504 ctcatttagtaagggataatgcataatatatgcaggggctaaggttcgaacct 27160556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 29332279 - 29332315
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatg 412  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  29332279 gtccccatgagcttaactcacttgataagggataatg 29332315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 44583584 - 44583616
Alignment:
Q  379 cccataagcttaactcatttgataagggataat 411  Q
    ||||| |||||||||||||||||||||||||||    
T  44583584 cccatgagcttaactcatttgataagggataat 44583616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 169208 - 169001
Alignment:
Q  18 tgaatctgcaaaatactttagctttgctcggtctctcttgttaattccat--tgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtatta 115  Q
    |||||||| ||||||||| ||| ||||| |||||||||  |||  |||||  |||||||||||||||||||| | | || ||| | |||||||| |||      
T  169208 tgaatctgtaaaatacttgagcgttgcttggtctctctcattacctccatattgtgcagagtttcttgctttcagtgaagaaacgttagtgggtatatgt 169109  T
Q  116 ttggagtaggaggagataatgggtatcaggtactcaagagtcaagagaaagtgctcaaccaaaattattttagcgctaaacaataccgccaaattttcat 215  Q
    ||| ||||| ||||||||||||||||||| |||| ||||||  |||||||||||||      |||||||||||||||||||||| ||||||| ||||  |    
T  169108 ttg-agtagaaggagataatgggtatcagttactgaagagt-tagagaaagtgctc------aattattttagcgctaaacaatgccgccaattttttgt 169017  T
Q  216 taaaattgtaattcta 231  Q
    ||||||| ||||||||    
T  169016 taaaattataattcta 169001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 27862933 - 27862866
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27862933 gtccccatgagcttagctcatttgataagggataatgcacaatttgtgcaggggctggggttcgaacc 27862866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 46283115 - 46283182
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  46283115 gtccccatgagcttacctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaacc 46283182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 50815700 - 50815767
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  50815700 gtccccatgagcttagctcatttgataaaggataatgcacaatttgtgcaggggccggggttcgaacc 50815767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 36993032 - 36993101
Alignment:
Q  374 tcgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  36993032 tcgttcccatgagcttagctcatttgataagggataatgcacaatatgtgaaggggttggggtttgaacc 36993101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 16556447 - 16556511
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| |||||| |||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  16556447 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacc 16556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 51974740 - 51974808
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||  ||| |||||||||    
T  51974740 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcgggattcgaacct 51974808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 13210266 - 13210199
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| || |||||| |||||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  13210266 gtccctatgagcttagctcatttggtcagggataatgcacaatatgtgcaggggccggggttcgaacc 13210199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 23448966 - 23449033
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| | |||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23448966 gtccccatgaacttagcttatttggtaagggataatgcacaatatgtgcaggggttggggttcgaacc 23449033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 40407062 - 40406995
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcagggg-ctggggttcgaacc 443  Q
    ||||||| |||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  40407062 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccgggggttcgaacc 40406995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 8716547 - 8716599
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggg 428  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  8716547 gtccctataagcttatctcatttggtaagggataatgcacaatatgtgcaggg 8716599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 19687684 - 19687628
Alignment:
Q  388 ttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||    
T  19687684 ttaactcatttgataagggataatgtacaatatgtgctgaggctgaggttcgaacct 19687628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 443
Target Start/End: Original strand, 52366212 - 52366267
Alignment:
Q  388 ttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||    
T  52366212 ttaactcatttggtaagggataatgcacaatatgtgcaggggttgaagttcgaacc 52366267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 8716492 - 8716442
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcag 426  Q
    |||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  8716492 gtccccatgaacttagctcatttgataagggataatgcacaatatgtgcag 8716442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 22096481 - 22096427
Alignment:
Q  388 ttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||| ||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  22096481 ttaattcatttggtaagggataatgcacaatatgtgcaggggccgaggttcgaac 22096427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 43362267 - 43362203
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| |||||| |||||||| |||||||||||||||||||| | ||||||  ||||||||||||    
T  43362267 cccatgagcttagctcatttgctaagggataatgcacaatatattcaggggtcggggttcgaacc 43362203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 45848017 - 45847961
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  45848017 cttatctcatttgataagggataatgcataatatgtgcagggatcggggttcgaacc 45847961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 51707117 - 51707181
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||| ||||||||||||||  ||||||||||| || |||||||| | ||||||||||||||||||    
T  51707117 ccatgagcttaactcatttagtaagggataatacataatatgtgtacgggctggggttcgaacct 51707181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 2832173 - 2832106
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| ||||| || |||||| | ||||||||||||||||||||  ||||||||||||    
T  2832173 gtccccatgagcttagctcatctggtaaggggtgatgcacaatatgtgcaggggtcggggttcgaacc 2832106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 25234944 - 25234893
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||||||||||||||||||| ||| ||||| || ||||||||||    
T  25234944 ctcatttgataagggataatgcacaataagtgtaggggttgaggttcgaacc 25234893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 49594146 - 49594201
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcga 440  Q
    |||||||||||| | ||||||||||||||| |||||||| |||||| |||||||||    
T  49594146 agcttaactcatcttataagggataatgcataatatgtggaggggccggggttcga 49594201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 11491312 - 11491254
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| ||||||||| ||||||||||||| ||| ||||||||||| || |||||||||    
T  11491312 agcttagctcatttgacaagggataatgcataatttgtgcaggggccggagttcgaacc 11491254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 31261803 - 31261753
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcagggg 429  Q
    ||||| ||||||| |||||||||||||||||||||||||| |||| |||||    
T  31261803 cccatgagcttaattcatttgataagggataatgcacaatgtgtgaagggg 31261753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 42154568 - 42154626
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||| ||||| ||||||||||| |||||||||||||| ||  ||||||||||||    
T  42154568 agcttaacttatttggtaagggataattcacaatatgtgcagaggtcggggttcgaacc 42154626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 24253194 - 24253143
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||||||||||||||||||||| ||||| ||||   |||||||||||    
T  24253194 ctcatttgataagggataatgcacaatttgtgctggggtcagggttcgaacc 24253143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 24570223 - 24570270
Alignment:
Q  396 tttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||||||||||||||||| || ||||| |||||||||||||    
T  24570223 tttggtaagggataatgcacaatatatgtaggggttggggttcgaacc 24570270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 45355803 - 45355752
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||  ||||||||||||||||||||||| |||||  ||||||||||||    
T  45355803 ctcatttagtaagggataatgcacaatatgtgtaggggtcggggttcgaacc 45355752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 45369544 - 45369493
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||  ||||||||||||||||||||||| |||||  ||||||||||||    
T  45369544 ctcatttagtaagggataatgcacaatatgtgtaggggtcggggttcgaacc 45369493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 38690660 - 38690726
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| |||||| |||| ||| |||||||||||||| | ||| ||||||||  ||||||||||||    
T  38690660 tccccatgagcttagctcacttggtaagggataatgcatattatatgcaggggtcggggttcgaacc 38690726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 41971401 - 41971351
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcag 426  Q
    |||||||| |||||| |||||||| |||| ||||||||||||| |||||||    
T  41971401 gtccccatgagcttagctcatttggtaagtgataatgcacaatttgtgcag 41971351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 23234042 - 23233989
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttc 438  Q
    |||||||||||||| |||||  |||||||||||| |||||||||| || |||||    
T  23234042 agcttaactcattttataagaaataatgcacaatttgtgcaggggttgtggttc 23233989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 35909127 - 35909078
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcagggg 429  Q
    |||| |||||| |||||||  |||||||||||||||||||| ||||||||    
T  35909127 ccatgagcttagctcattttgtaagggataatgcacaatatatgcagggg 35909078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 43084444 - 43084505
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||| ||||||||||||||| ||||| |||||||||||||| |  |||||  ||||||||||    
T  43084444 ccatgagcttaactcatttggtaaggaataatgcacaatatatataggggtcggggttcgaa 43084505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 48240410 - 48240451
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggg 428  Q
    ||||||||||||| |||||||||||||||||| | |||||||    
T  48240410 cttaactcatttgttaagggataatgcacaatttctgcaggg 48240451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Original strand, 49635425 - 49635474
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgca 425  Q
    |||||||| || ||| |||||||| |||||||||||||||||||| ||||    
T  49635425 gtccccatgagtttagctcatttggtaagggataatgcacaatatatgca 49635474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 26885499 - 26885435
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| |||||| ||||||||  | ||||||||||||| ||| ||| ||||| ||||||||||||    
T  26885499 cccatgagcttagctcatttggcaggggataatgcacattatatgctggggccggggttcgaacc 26885435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 37574264 - 37574304
Alignment:
Q  374 tcgtccccataagcttaactcatttgataagggataatgca 414  Q
    |||||||||| |||||| |||||||| ||||||||||||||    
T  37574264 tcgtccccatgagcttagctcatttggtaagggataatgca 37574304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 1032564 - 1032630
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1032564 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaacc 1032630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 30466672 - 30466740
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||| |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  30466672 gtccccatgagcttagctcatttggtaagggctaatgcacaatatgtgcaggggctggggttcgaacct 30466740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 13906728 - 13906661
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  13906728 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 13906661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 41454929 - 41454862
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  41454929 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 41454862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 38289334 - 38289269
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  38289334 cccataagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacct 38289269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 4259852 - 4259919
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  4259852 gtccgcatgagcttaactcatttggtaagggataatgcacaatatgtgcaggggccggggttccaacc 4259919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 10161957 - 10162024
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  10161957 gtccccatgagcttagctcatctggtaagggataatgcacaatatgtgcaggggttggggttcgaacc 10162024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 44828535 - 44828468
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  44828535 gtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcagggtctggggttcgaacc 44828468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 444
Target Start/End: Original strand, 8350427 - 8350497
Alignment:
Q  374 tcgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||| || ||||||||||    
T  8350427 tcgtccccataagcttaactcatttggtaagtgataatacacaatatatgcaggggccggagttcgaacct 8350497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 36104015 - 36103957
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  36104015 agcttaactcatttggtaaaggataatgcacaatatgtgcaggggccggggttcgaacc 36103957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 23139067 - 23139133
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||| | |||||||||    
T  23139067 gtccccatgagcttagctcatttgacaagggataatgcacaatgtgtgcaggggccgaggttcgaac 23139133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 40103524 - 40103582
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  40103524 agcttagctcatttgataagggataatgcacaatataagcaggggctgaggttcgaacc 40103582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 19733171 - 19733106
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||  ||||||||||    
T  19733171 gtccccataagcttagctcatttggtaagggataatgcataatatatgcaggggtcggggttcgaa 19733106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 22652680 - 22652743
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||| ||||||||||||||||||||||| ||| ||||||||||| || |||||||||    
T  22652680 ccatgagcttagctcatttgataagggataatgcataatttgtgcaggggccggtgttcgaacc 22652743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 429
Target Start/End: Complemental strand, 34038052 - 34037997
Alignment:
Q  374 tcgtccccataagcttaactcatttgataagggataatgcacaatatgtgcagggg 429  Q
    |||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  34038052 tcgtacccatgagcttaacttatttgataagggataatacacaatatgtgcagggg 34037997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 38063970 - 38064029
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctgggg 435  Q
    |||||||| ||||||| ||||||| |||||||||||||||||| ||||||||| ||||||    
T  38063970 gtccccatgagcttaattcatttggtaagggataatgcacaatttgtgcagggactgggg 38064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 39104616 - 39104667
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  39104616 ctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaacc 39104667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 41845527 - 41845464
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||||   ||||||||||||    
T  41845527 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggatcggggttcgaacc 41845464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 1360227 - 1360169
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| ||||||||  || ||||||||||||||||||| |||||||||||||||||||    
T  1360227 agcttagctcatttggcaaaggataatgcacaatatgtgtaggggctggggttcgaacc 1360169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 5904475 - 5904409
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||| ||| |||||||| |||  ||||||||||||||||||||||||  ||||||||||||    
T  5904475 tccccataagtttagctcatttggtaaaagataatgcacaatatgtgcaggggacggggttcgaacc 5904409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 16973016 - 16973081
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| |||| |||||||||| |||||||||||||||||||||||||||||  || ||||||||    
T  16973016 gtccccatcagct-aactcatttgttaagggataatgcacaatatgtgcaggggtcggtgttcgaac 16973081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 12831563 - 12831628
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||||| || |||||||||||| ||| ||| |||||||||||||||||||| |||| |||||||    
T  12831563 gtccccatgagtttaactcatttggtaaaggacaatgcacaatatgtgcagggtctggagttcgaa 12831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 29114106 - 29114163
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| | |||||| ||||    
T  29114106 cttagctcatttgataagggataatgcacaatttgtgcaggggccgcggttcgtacct 29114163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 43413963 - 43413923
Alignment:
Q  401 taagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  43413963 taagggataatgcacaatttgtgcaggggctggggttcgaa 43413923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 45536728 - 45536778
Alignment:
Q  393 tcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||||||||||||| ||| ||||||||||| || |||||||||    
T  45536728 tcatttgataagggataatgcaaaatttgtgcaggggccggagttcgaacc 45536778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 31153505 - 31153545
Alignment:
Q  404 gggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  31153505 gggataatgcacaatatgtgcaggggccgggattcgaacct 31153545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 38545017 - 38544977
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgca 425  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  38545017 agcttacctcatttggtaagggataatgcacaatatgtgca 38544977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 280082 - 280032
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||||||||| |||||||||||||||| | |||||||||||    
T  280082 ctcatttggtaagggataatgtacaatatgtgcagggg-tagggttcgaacc 280032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 635770 - 635820
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||||||||| |||||||||||||||| | |||||||||||    
T  635770 ctcatttggtaagggataatgtacaatatgtgcagggg-tagggttcgaacc 635820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 821573 - 821623
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||||||||| |||||||||||||||| | |||||||||||    
T  821573 ctcatttggtaagggataatgtacaatatgtgcagggg-tagggttcgaacc 821623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 36587752 - 36587685
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| ||||||||||||||| |||| |||||  ||||||||||| |||||  ||||||| ||||    
T  36587752 gtccccatgagcttaactcatttggtaagagataaaacacaatatgtgtaggggtcggggttccaacc 36587685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 12927802 - 12927864
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||| ||||||||||||||  || ||||||||||||||| |||||||||   ||||||||||    
T  12927802 cccatgagcttaactcatttagtaggggataatgcacaatttgtgcagggttcggggttcgaa 12927864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 32822109 - 32822147
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgca 414  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  32822109 gtccccatgagcttaactcatttggtaagggataatgca 32822147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 43456745 - 43456687
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| |||||||| |||||||||||||||||||| || | |||  ||||||||||||    
T  43456745 agcttagctcatttggtaagggataatgcacaatatatgtaagggtcggggttcgaacc 43456687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 11052677 - 11052632
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggc 430  Q
    ||||||||||||||| ||||||||||||||||   |||||||||||    
T  11052677 agcttaactcatttggtaagggataatgcacatattgtgcaggggc 11052632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 47864631 - 47864696
Alignment:
Q  378 ccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  47864631 ccccataagcttagctcatttggtaagggataatgcacaatatgtgcaggggttggggttcgaacc 47864696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 33528307 - 33528240
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  33528307 gtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaacc 33528240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 46247253 - 46247320
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  46247253 gtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaacc 46247320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 30162650 - 30162717
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  30162650 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaagggccggggttcgaacc 30162717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 46798575 - 46798642
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||    
T  46798575 gtccccatgagcttaactcatttggtgagggataatgcacaatatgtgcaggggccgggattcgaacc 46798642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 25165434 - 25165500
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  25165434 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggaccggggttcgaacc 25165500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 50381707 - 50381772
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||    
T  50381707 gtccccatgagcttaactcatttggtaagggataatgcacaatatatgcaggggtcggggttcgaa 50381772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 39739270 - 39739334
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  39739270 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaacc 39739334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 2259150 - 2259217
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| || |||| ||||    
T  2259150 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcaaacc 2259217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 11483606 - 11483672
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| |||||| |||||||| |||||||||||||| |||||||||||||||  ||||||||||    
T  11483606 gtccccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccagggttcgaac 11483672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 16141455 - 16141389
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| ||| ||  |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  16141455 gtccccatgagcatagttcatttgataagggataatgcacaatatgtacaagggctggggttcgaac 16141389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 29226320 - 29226386
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| |||||| |||||||| ||||||||||  |||||||||||||||||| ||||||||||||    
T  29226320 tccccatgagcttagctcatttggtaagggataacacacaatatgtgcaggggccggggttcgaacc 29226386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 31419585 - 31419643
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||    
T  31419585 agcttaactcatttggtaagggacaacgcacaatatgtgtaggggctggggttcgaacc 31419643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 8258144 - 8258212
Alignment:
Q  375 cgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||| ||||||||||||||| ||| || ||||||||||||||||||||||  || |||||||||    
T  8258144 cgtccccatgagcttaactcatttggtaatggttaatgcacaatatgtgcaggggtcggagttcgaacc 8258212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 27817169 - 27817102
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| || |||||| |||||||| |||||||||||||||||| ||||||||||| || |||||||||    
T  27817169 gtccctatgagcttacctcatttggtaagggataatgcacaatttgtgcaggggccggagttcgaacc 27817102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 34225192 - 34225243
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggct 431  Q
    |||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  34225192 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggct 34225243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 36590383 - 36590450
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| || ||| |||||||| |||||||||||| ||||||||||||||||| | ||||||||||    
T  36590383 gtccccatgagattagctcatttggtaagggataatgtacaatatgtgcaggggccgtggttcgaacc 36590450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 55426107 - 55426174
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| ||| ||||||||||||||||||||| |||| | ||||||||||    
T  55426107 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgcatgggccgaggttcgaacc 55426174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 9321045 - 9320996
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  9321045 ctcatttgataagggataatgtacaatttgtgcaggggttggggttcgaa 9320996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 986021 - 985961
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggt 436  Q
    ||||||||  |||||||| ||||| ||||| |||||||||||| |||||||||||||||||    
T  986021 gtccccatgtgcttaacttatttggtaaggcataatgcacaatttgtgcaggggctggggt 985961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 27471512 - 27471564
Alignment:
Q  391 actcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||| |||||||||||||| ||||||| |||||| |||||||||||||    
T  27471512 actcatttggtaagggataatgcataatatgtacaggggttggggttcgaacc 27471564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 32421341 - 32421409
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||| |||||| ||||| || |||||||||||||| ||||| ||||||||  |||||||||||||    
T  32421341 gtccccatgagcttagctcatctggtaagggataatgcataatatatgcaggggtcggggttcgaacct 32421409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 33780312 - 33780364
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||| |||||||||||||||||||| | |||||| ||||||||||||||    
T  33780312 ctcatttggtaagggataatgcacaatatatacaggggttggggttcgaacct 33780364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 444
Target Start/End: Complemental strand, 31435578 - 31435535
Alignment:
Q  401 taagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  31435578 taagggataatgcacaatatgtgtaggggttggggttcgaacct 31435535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 37756499 - 37756448
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||||||||||||||| ||| | ||||||||||||||||||||||    
T  37756499 ctcacttgataagggataatgcataatttatgcaggggctggggttcgaacc 37756448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 42913497 - 42913431
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||  |||||| |||||||| ||||||| ||||||||||||||||||||  || |||||||||    
T  42913497 gtccccacgagcttagctcatttgctaagggaaaatgcacaatatgtgcagggattgaggttcgaac 42913431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 45510788 - 45510830
Alignment:
Q  388 ttaactcatttgataagggataatgcacaatatgtgcaggggc 430  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  45510788 ttaactcatttgataaggaataatgtacaatatgtgcaggggc 45510830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 1084130 - 1084077
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcagggg 429  Q
    |||||||| |||||| |||||||| ||| |||||||| ||||||||||||||||    
T  1084130 gtccccatgagcttagctcatttgttaaaggataatgtacaatatgtgcagggg 1084077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 166781 - 166848
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| | |||||| |||| ||| |||||||||||||| ||| | ||||||||| ||||||||||||    
T  166781 gtccccgtgagcttagctcacttggtaagggataatgcataatttatgcaggggccggggttcgaacc 166848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 49429454 - 49429492
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgca 414  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  49429454 gtccccatgagcttaactcatttggtaagggataatgca 49429492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 44062113 - 44062076
Alignment:
Q  406 gataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||||||||||||||||||| || |||||||||    
T  44062113 gataatgcacaatatgtgcaggggccggagttcgaacc 44062076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 33830455 - 33830415
Alignment:
Q  391 actcatttgataagggataatgcacaatatgtgcaggggct 431  Q
    ||||||||| |||| ||||||||||||||| ||||||||||    
T  33830455 actcatttggtaagagataatgcacaatatatgcaggggct 33830415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 38869282 - 38869226
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||| ||| |||||||||||||| ||||  ||||||||  ||||||||||||    
T  38869282 cttaactcacttggtaagggataatgcataatacatgcaggggtcggggttcgaacc 38869226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 93816 - 93884
Alignment:
Q  160 gagaaagtgctcaaccaaaattattttagcgctaaacaataccgccaaattttcattaaaattgtaatt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || |||||    
T  93816 gagaaagtgctcaaccaaagttattttagcgctaaacaataccgccaaattttcgttaaagttataatt 93884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 94058 - 94137
Alignment:
Q  243 ttatttttgttattatccttcaaaaata-aaagtttatggttattataaatatcatagataagtttttggttagataaat 321  Q
    ||||| || ||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  94058 ttattgttattattatccttaaaaaaaataaagtttatggttattattaatatcatagataagtttttggttagataaat 94137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 93733 - 93810
Alignment:
Q  63 tccattgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtattattggagtaggaggagataatgggta 140  Q
    ||||||||| || ||||||| ||||||||||| |||  ||| ||||| |||  |||||||| ||| ||||||||||||    
T  93733 tccattgtgtagggtttcttacttttactcaagaaaccataatgggtttatgtttggagtaagagaagataatgggta 93810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 40273814 - 40273881
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  40273814 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 40273881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 16179871 - 16180079
Alignment:
Q  18 tgaatctgcaaaa-tactttagctttgctcggtctctcttgttaattccat--tgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtatt 114  Q
    ||||||||||||| ||||| ||| ||||| |||||||||  |||  |||||  |||||||||||||||||||| | | || ||| | |||||||| |||     
T  16179871 tgaatctgcaaaaatacttgagcgttgcttggtctctctcattacctccatattgtgcagagtttcttgctttcagtgaagaaacgttagtgggtatatg 16179970  T
Q  115 attggagtaggaggagataatgggtatcaggtactcaagagtcaagagaaagtgctcaaccaaaattattttagcgctaaacaataccgccaaattttca 214  Q
     ||| ||||| ||||||||||||||||||| |||| ||||||  |||||||||||||      |||||||||||||||||||||| ||| ||| ||||      
T  16179971 tttg-agtagaaggagataatgggtatcagttactgaagagt-tagagaaagtgctc------aattattttagcgctaaacaatgccgtcaattttttg 16180062  T
Q  215 ttaaaattgtaattcta 231  Q
     ||||||| ||||||||    
T  16180063 gtaaaattataattcta 16180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 437
Target Start/End: Complemental strand, 34322126 - 34322065
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggtt 437  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||    
T  34322126 gtccccataagcatagctcatttgataagggataatgcacaatatgtgcagggactggggtt 34322065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 24029977 - 24030045
Alignment:
Q  375 cgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  24029977 cgtccccatgagtttagctcatttgataagggataatgcacaatatgtgtaggggccggggttcgaacc 24030045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 1575687 - 1575754
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||    
T  1575687 gtccccatgagcttaactcatttggtaagggataatacacaatatgtacaggggttggggttcgaacc 1575754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 42554631 - 42554694
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  42554631 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggttggggttcgaacc 42554694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 48433812 - 48433745
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  48433812 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcaaacc 48433745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 12166086 - 12166142
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  12166086 cttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaacc 12166142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 46266661 - 46266729
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||  |||||||||||||    
T  46266661 gtccccatgagcttaactcatttggtaagggataatgcacaatttgtgcgggggacggggttcgaacct 46266729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 23824693 - 23824626
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||| |||| | ||||||||||    
T  23824693 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcatgggccgaggttcgaacc 23824626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 31793461 - 31793528
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||| |||||| |||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  31793461 gtccacatgagcttagctcatttgttaagggataatgcacaatatgtgcaggggtcggggttcgaacc 31793528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 36528323 - 36528254
Alignment:
Q  374 tcgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||  |||||  || |||||||||    
T  36528323 tcgtccccatgagcttaactcatttggtaagggataatgcacaatatgtataggggtcggagttcgaacc 36528254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 42338348 - 42338284
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||||| |||||| |||||||| ||||| |||||||||||||||||||||||  ||||||||||    
T  42338348 tccccatgagcttagctcatttggtaaggaataatgcacaatatgtgcaggggacggggttcgaa 42338284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 27454007 - 27454072
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    ||||| |||||| |||||||| |||||||||||||||||| ||||||||||  | |||||||||||    
T  27454007 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgaggttcgaacct 27454072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 26456107 - 26456055
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggg 428  Q
    |||||||| |||||| |||||||| ||||||| ||||||||||||||||||||    
T  26456107 gtccccatgagcttagctcatttggtaagggacaatgcacaatatgtgcaggg 26456055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 38378231 - 38378279
Alignment:
Q  395 atttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  38378231 atttggtaagggataatgcacaatatgtgcaggggccggggtttgaacc 38378279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 3902375 - 3902309
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||  |||||| |||||||| |||||||||||||| |||||||||| |||| ||||||||||||    
T  3902375 gtccccacgagcttagctcatttggtaagggataatgcaaaatatgtgca-gggccggggttcgaacc 3902309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 3961498 - 3961443
Alignment:
Q  388 ttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||||||    
T  3961498 ttaactcatttggtaaaggataatgcacaatttgtgcagaggccggggttcgaacc 3961443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 4956174 - 4956127
Alignment:
Q  396 tttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||    
T  4956174 tttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacc 4956127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 33248904 - 33248837
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||| ||||||||||| ||||| ||  ||||||||||||    
T  33248904 gtccccatgagcttagctcatttggtaagggatgatgcacaatatatgcagaggtcggggttcgaacc 33248837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 14707284 - 14707352
Alignment:
Q  374 tcgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||| |||||| |||||||| ||||||||||||||   ||| |||||||| |||||||||||||    
T  14707284 tcgtccccatgagcttagctcatttggtaagggataatgca-tttatatgcaggggttggggttcgaacc 14707352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 28712361 - 28712413
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggg 428  Q
    |||| ||| ||||||||||||||| |||||||||||| | |||||||||||||    
T  28712361 gtcctcatgagcttaactcatttggtaagggataatgtataatatgtgcaggg 28712413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 15025149 - 15025216
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| ||||||||||||||| |||||||||||||| | | | | ||||||| ||||||| ||||    
T  15025149 gtccccatgagcttaactcatttggtaagggataatgcatattttatacaggggccggggttcaaacc 15025216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 44986587 - 44986654
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||| |||||| |||||||| ||||||||||||||||||  |||||| ||| ||| ||||||||    
T  44986587 gtcctcatgagcttagctcatttggtaagggataatgcacaattagtgcagtggccgggattcgaacc 44986654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 46570073 - 46570006
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| | |||||| |||| |||||||||||||||||| | | | ||||||||| ||||||||||||    
T  46570073 gtccccgtgagcttagctcacttgataagggataatgcatagtttatgcaggggccggggttcgaacc 46570006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 48619793 - 48619848
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggg 434  Q
    ||||| || |||||||||||| ||| |||||||| |||||||||||||||| ||||    
T  48619793 cccatgagtttaactcatttggtaaaggataatgtacaatatgtgcaggggttggg 48619848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 8249698 - 8249764
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| |||||| |||| ||| ||| |||||||||| ||||| ||||||||  |||||||||||    
T  8249698 gtccccatgagcttagctcacttggtaaaggataatgcataatatatgcaggggtcggggttcgaac 8249764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 24315446 - 24315388
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| |||||||  ||| ||||||||||||||||||| |||||  ||||||||||||    
T  24315446 agcttagctcatttagtaatggataatgcacaatatgtgtaggggtcggggttcgaacc 24315388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 37918684 - 37918714
Alignment:
Q  387 cttaactcatttgataagggataatgcacaa 417  Q
    |||||||||||||||||||||||||||||||    
T  37918684 cttaactcatttgataagggataatgcacaa 37918714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 43440701 - 43440747
Alignment:
Q  395 atttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||| |||||||||||||||||||||||||| ||  ||||||||||    
T  43440701 atttggtaagggataatgcacaatatgtgcagaggtcggggttcgaa 43440747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 3889894 - 3889850
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcagggg 429  Q
    |||||| ||||||||| ||||||||||| ||||||| ||||||||    
T  3889894 agcttagctcatttgacaagggataatgtacaatatatgcagggg 3889850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 7608794 - 7608758
Alignment:
Q  407 ataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  7608794 ataatgcacaatatatgcaggggccggggttcgaacc 7608758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 35661236 - 35661180
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||||| ||| ||||||||||||||||||||||||   | |||||||||||||    
T  35661236 cttatctcatatgacaagggataatgcacaatatgtgcattagttggggttcgaacc 35661180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 6228362 - 6228295
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  6228362 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 6228295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 15717115 - 15717048
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  15717115 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 15717048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 1128510 - 1128454
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  1128510 cttaactcatttgataagggataatgcataatatgtgcaggggttggggttcgaacc 1128454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 21874322 - 21874258
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||    
T  21874322 tccccataagcttaactcatttggtaagggataatgcacaatatgtgcatgggcaggagttcgaa 21874258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 29322061 - 29322011
Alignment:
Q  393 tcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29322061 tcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaacc 29322011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 18903469 - 18903402
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| ||||||||  |||||||||| |||||||||||||||||| ||||||||||||    
T  18903469 gtccccatgagcttagctcatttggcaagggataatacacaatatgtgcaggggccggggttcgaacc 18903402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 9357165 - 9357215
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9357165 ctcatttgataagggataatgtacaatttgtgcaggggctggggttcgaac 9357215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 24794988 - 24794930
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  24794988 agcttagctcatttggtaagggataatgcacaatatgtgcaggggttgggattcgaacc 24794930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 19748102 - 19748159
Alignment:
Q  386 gcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  19748102 gcttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaacc 19748159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 4854408 - 4854341
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| ||||||||  ||||||||||| ||||| ||||||||||| ||||||||||||    
T  4854408 gtccccatgagcttagctcatttggcaagggataatgtacaatgtgtgcaggggccggggttcgaacc 4854341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 20415663 - 20415597
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| || ||| |||||||  ||||||||||||||||||||||||||||||  |||||||||||    
T  20415663 tccccatgagtttagctcattttgtaagggataatgcacaatatgtgcaggggccagggttcgaacc 20415597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 25045737 - 25045795
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttc 438  Q
    |||| |||||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  25045737 ccatgagcttagctcatttggtaagggataattcacaatatgtgcaggggctgaggttc 25045795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 5948858 - 5948925
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| ||||||||| || ||||  ||||||||||||||| |||||||||||||  ||||||||||||    
T  5948858 gtccctataagcttaccttattttgtaagggataatgcacgatatgtgcaggggtcggggttcgaacc 5948925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 11552864 - 11552931
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| |||||||| ||||||||  ||||||||| | ||||| ||||||||||| ||||||||||||    
T  11552864 gtccccttaagcttagctcatttggcaagggataacgtacaatgtgtgcaggggccggggttcgaacc 11552931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 30422207 - 30422144
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||| |||||   ||||||||||    
T  30422207 cccatgagcttaactcatttggtaagggataatgtacaatatgtgtaggggtccgggttcgaac 30422144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 31637346 - 31637401
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcga 440  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||  |||||||||    
T  31637346 agcttaactcatttggtatgggataatgcacaatatttgcaggggtcggggttcga 31637401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 3974435 - 3974500
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| ||||||||||||||| || ||| ||||||| ||||||||||||||  |||||||||||    
T  3974435 gtccccatgagcttaactcatttggtatggg-taatgcagaatatgtgcaggggtcggggttcgaac 3974500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 7955016 - 7954971
Alignment:
Q  385 agcttaactcattt-gataagggataatgcacaatatgtgcagggg 429  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  7955016 agcttaactcattttggtaagggataatgcacaatatgtgcagggg 7954971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 17216953 - 17217017
Alignment:
Q  378 ccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||| |||||| |||||||| |||||||||||||| |||||||| |||||  || ||||||||    
T  17216953 ccccatgagcttagctcatttggtaagggataatgcataatatgtgtaggggtcggagttcgaac 17217017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 18618641 - 18618576
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||||| |||||| |||||||| |||  |||||||||||||||||  | ||| |||||||||||    
T  18618641 gtccccatgagcttagctcatttggtaaaagataatgcacaatatgtataagggttggggttcgaa 18618576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 7273043 - 7273111
Alignment:
Q  375 cgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| | ||||||||||| ||| |||||||||||| | ||||| |||| || ||| ||||||||||    
T  7273043 cgtccccgtgagcttaactcagttggtaagggataatgaataatatatgcaaggtctgtggttcgaacc 7273111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 38503359 - 38503292
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  38503359 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 38503292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 31250141 - 31250207
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  31250141 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 31250207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 12375514 - 12375447
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  12375514 gtccccatgagcttagctcatttggtaatggataatgcacaatatgtgcaggggccggggttcgaacc 12375447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 43227868 - 43227926
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  43227868 agcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 43227926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 376 - 444
Target Start/End: Complemental strand, 931040 - 930972
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacct 444  Q
    |||||||| ||| || |||||| | ||||||| ||||||||||||||||||||| ||||||||||||||    
T  931040 gtccccatgagcatagctcattcggtaagggacaatgcacaatatgtgcaggggttggggttcgaacct 930972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 5039673 - 5039739
Alignment:
Q  375 cgtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    ||||||||| ||||||||||||||| ||||| |||||| |||||||||||| |||| |||||||||||    
T  5039673 cgtccccatgagcttaactcatttggtaagg-ataatgtacaatatgtgcaagggccggggttcgaac 5039739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 15470723 - 15470656
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| || ||||||| ||||||| ||||||||||||||||||||||||| |||||| | ||||||||    
T  15470723 gtccctatgagcttaattcatttggtaagggataatgcacaatatgtgcaagggctgagattcgaacc 15470656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 15106986 - 15106922
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| ||||||||| ||||| |||||||||||||||||| ||||||| ||  ||||||||||||    
T  15106986 cccattagcttaacttatttggtaagggataatgcacaatttgtgcagaggtcggggttcgaacc 15106922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 15696216 - 15696264
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcga 440  Q
    |||||||||||||||||||||||||||||||| |||||| ||| |||||    
T  15696216 ctcatttgataagggataatgcacaatatgtgtaggggccgggattcga 15696264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 1572119 - 1572170
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||||| ||||||| | ||||||||||||||||||||||||    
T  1572119 ctcatttgttaagggattatgcacattttgtgcaggggctggggttcgaacc 1572170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 87784 - 87850
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| |||| |||||||||| |||||||||||||||||||| |||| |||  || ||||||||    
T  87784 gtccccatgagctcaactcatttggtaagggataatgcacaatatatgcaagggtcggagttcgaac 87850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 17077363 - 17077421
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||  ||| ||||||||    
T  17077363 agcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgggattcgaacc 17077421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 42643889 - 42643836
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacctg 445  Q
    |||||||| |||||||||||||||||||||||||||||  |  |||||||||||    
T  42643889 ctcatttggtaagggataatgcacaatatgtgcaggggtcgaagttcgaacctg 42643836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 43263206 - 43263259
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcagggg 429  Q
    |||||||| ||||||||||||||| |||| |||||||||||| |||| ||||||    
T  43263206 gtccccatgagcttaactcatttggtaagagataatgcacaacatgtacagggg 43263259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 462010 - 462066
Alignment:
Q  387 cttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||||| |||||| |||||||||||||||| ||| ||| |||||||||||    
T  462010 cttagctcatttggtaaggggtaatgcacaatatgtgtaggagctagggttcgaacc 462066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 4395953 - 4395886
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||||||||||||  ||  ||||||||| ||| ||||||||||| || |||||||||    
T  4395953 gtccccatgagcttaactcatttggcaaatgataatgcataatgtgtgcaggggccggagttcgaacc 4395886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 419
Target Start/End: Original strand, 13576316 - 13576359
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaata 419  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||    
T  13576316 gtcctcatgagcttaactcatttggtaagggataatgcacaata 13576359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 1984291 - 1984249
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaat 418  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||    
T  1984291 gtccacatgagcttaactcatttggtaagggataatgcacaat 1984249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 5263171 - 5263229
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||| |||||||| ||| ||||||||||||||||||| ||||| ||  |||||||||    
T  5263171 agcttagctcatttggtaatggataatgcacaatatgtgtagggggtgatgttcgaacc 5263229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 443
Target Start/End: Original strand, 29530796 - 29530834
Alignment:
Q  405 ggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  29530796 ggataatgcacaatttgtgcaggggccggggttcgaacc 29530834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 3294076 - 3294141
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||| | ||||||||| | ||| |||||||||||||| ||| | ||||||||| ||||||||||    
T  3294076 gtccccgtgagcttaacttacttgttaagggataatgcataatttatgcaggggccggggttcgaa 3294141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 7608156 - 7608123
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaat 418  Q
    ||||||||||||||||||| ||||||||||||||    
T  7608156 agcttaactcatttgataaaggataatgcacaat 7608123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 33545472 - 33545435
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcagggg 429  Q
    |||||||| || ||||||||||||||||||||||||||    
T  33545472 ctcatttgctatgggataatgcacaatatgtgcagggg 33545435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 42208913 - 42208962
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggg 428  Q
    ||||| |||||| |||||||  ||||||||||| ||||||||||||||||    
T  42208913 cccatgagcttagctcatttagtaagggataatacacaatatgtgcaggg 42208962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 26671601 - 26671641
Alignment:
Q  401 taagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  26671601 taagggataatgcacaatttgtgcaggggctgagtttcgaa 26671641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 26943198 - 26943238
Alignment:
Q  401 taagggataatgcacaatatgtgcaggggctggggttcgaa 441  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  26943198 taagggataatgcacaatttgtgcaggggctgagtttcgaa 26943238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 419705 - 419772
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  419705 gtccccatgagcttagctcatttggtaagggataatgaacaatatgtgcaggggccggggttcgaacc 419772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 121901 - 121834
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||| |||||| |||||||| || ||||||||||||||||||||||||| | ||||||||||||    
T  121901 gtccccatgagcttagctcatttggtaggggataatgcacaatatgtgcagggaccggggttcgaacc 121834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 25553247 - 25553181
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||||||||| |  ||||||||||||    
T  25553247 gtccccatgagcttaattcatttggtaagggataatgcacaatatgtgcagagattggggttcgaac 25553181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 43027149 - 43027215
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||| |||||| ||||||||||||||||||||||||||| ||||| || |||| ||||||||||    
T  43027149 tccccatgagcttagctcatttgataagggataatgcacaatttgtgcgggtgctgaggttcgaacc 43027215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 18949783 - 18949719
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| ||||||||||||||||||| ||||||||||  |||||||||||||  ||||||||||||    
T  18949783 cccatgagcttaactcatttgataacggataatgcattatatgtgcaggggtcggggttcgaacc 18949719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 11069447 - 11069380
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||| |||||| |||||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  11069447 gtccgcatgagcttagctcatttggtaaggaataatgcacaatatgtgcagggtttggggttcgaacc 11069380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 429
Target Start/End: Original strand, 34107486 - 34107541
Alignment:
Q  374 tcgtccccataagcttaactcatttgataagggataatgcacaatatgtgcagggg 429  Q
    ||||||| || |||||| |||||||| |||||||||||||||||||||||||||||    
T  34107486 tcgtccctatgagcttagctcatttggtaagggataatgcacaatatgtgcagggg 34107541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 6866510 - 6866552
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcagg 427  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  6866510 agcttaactcatttggtaagggataatgcacaatatgtgcagg 6866552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 16403522 - 16403572
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggc 430  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  16403522 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggc 16403572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 466774 - 466825
Alignment:
Q  392 ctcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||||||||||||||||||| || | | ||||||||||||||||||||||||    
T  466774 ctcatttgataagggataatacatattttgtgcaggggctggggttcgaacc 466825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 3330303 - 3330236
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||||||  |||||||||||||  |||||||||||||||||||||||||| ||  || |||||||||    
T  3330303 gtccccatgtgcttaactcatttagtaagggataatgcacaatatgtgcagaggtcggagttcgaacc 3330236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 442
Target Start/End: Complemental strand, 17543173 - 17543126
Alignment:
Q  395 atttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    ||||| |||||||||||||||||||||||||||||| || ||||||||    
T  17543173 atttggtaagggataatgcacaatatgtgcaggggccggagttcgaac 17543126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 31149202 - 31149151
Alignment:
Q  377 tccccataagcttaactcatttgataagggataatgcacaatatgtgcaggg 428  Q
    ||||||| ||| || |||||||| ||||||||||||||||||||||||||||    
T  31149202 tccccatgagcatagctcatttggtaagggataatgcacaatatgtgcaggg 31149151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 18424249 - 18424188
Alignment:
Q  378 ccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||| |||||| |||||||| |||||   |||||||||||||||||||||| |||||||||||    
T  18424249 ccccatgagcttagctcatttggtaagg---aatgcacaatatgtgcaggggccggggttcgaac 18424188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 19843465 - 19843398
Alignment:
Q  376 gtccccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| ||| ||||||||||||||  |||||||| ||| ||||||||||||||||   |||||||||||    
T  19843465 gtcctcatgagcttaactcatttcgtaagggatgatgtacaatatgtgcaggggtcagggttcgaacc 19843398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 27463624 - 27463561
Alignment:
Q  380 ccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    |||| |||||| |||||||| ||||| |||||||||||||| |||||| || ||| ||||||||    
T  27463624 ccatgagcttagctcatttggtaaggaataatgcacaatatatgcaggagccgggattcgaacc 27463561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 33065350 - 33065293
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaac 442  Q
    |||||| ||||||||  ||||||||||||||||| |||| |||||  |||||||||||    
T  33065350 agcttagctcatttggcaagggataatgcacaatgtgtgtaggggtcggggttcgaac 33065293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 32084841 - 32084905
Alignment:
Q  379 cccataagcttaactcatttgataagggataatgcacaatatgtgcaggggctggggttcgaacc 443  Q
    ||||| |||||| |||||||| ||||||| |||||| | ||| || |||||| ||||||||||||    
T  32084841 cccatgagcttagctcatttggtaagggacaatgcatattatatgtaggggccggggttcgaacc 32084905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Original strand, 10578 - 10612
Alignment:
Q  385 agcttaactcatttgataagggataatgcacaata 419  Q
    |||||| ||||||||||||||||||||||||||||    
T  10578 agcttagctcatttgataagggataatgcacaata 10612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University