View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21463_high_1 (Length: 506)

Name: NF21463_high_1
Description: NF21463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21463_high_1
NF21463_high_1
[»] chr5 (24 HSPs)
chr5 (1-506)||(37869412-37869917)
chr5 (41-200)||(21144023-21144181)
chr5 (31-200)||(20355146-20355314)
chr5 (72-200)||(13153599-13153726)
chr5 (80-264)||(15399611-15399797)
chr5 (31-161)||(42778936-42779064)
chr5 (92-200)||(17668743-17668850)
chr5 (117-182)||(20628040-20628105)
chr5 (117-181)||(31567818-31567882)
chr5 (122-177)||(38082947-38083002)
chr5 (83-184)||(35687296-35687402)
chr5 (146-180)||(38083061-38083095)
chr5 (149-184)||(4561682-4561717)
chr5 (146-184)||(11721524-11721562)
chr5 (146-184)||(23159692-23159730)
chr5 (146-184)||(25919815-25919853)
chr5 (146-184)||(29691216-29691254)
chr5 (146-184)||(38874417-38874455)
chr5 (146-184)||(41123223-41123261)
chr5 (125-186)||(6527313-6527374)
chr5 (146-182)||(10819465-10819501)
chr5 (147-183)||(12147989-12148025)
chr5 (146-190)||(18232018-18232062)
chr5 (148-200)||(31567697-31567747)
[»] chr3 (28 HSPs)
chr3 (40-264)||(55257639-55257864)
chr3 (31-165)||(25124866-25125000)
chr3 (53-200)||(43426358-43426505)
chr3 (50-186)||(17582462-17582600)
chr3 (69-264)||(7308179-7308373)
chr3 (81-200)||(23070058-23070176)
chr3 (31-240)||(17030660-17030869)
chr3 (65-179)||(7013249-7013363)
chr3 (92-200)||(25159022-25159129)
chr3 (68-182)||(30226238-30226352)
chr3 (117-200)||(5303668-5303750)
chr3 (83-184)||(37050164-37050265)
chr3 (91-200)||(18359295-18359403)
chr3 (80-181)||(45008056-45008158)
chr3 (149-187)||(1347666-1347704)
chr3 (146-200)||(17030593-17030645)
chr3 (146-184)||(48689330-48689368)
chr3 (113-160)||(20275554-20275601)
chr3 (146-184)||(300425-300463)
chr3 (146-184)||(5572212-5572249)
chr3 (146-184)||(13041442-13041480)
chr3 (146-184)||(13049519-13049557)
chr3 (146-200)||(18359450-18359503)
chr3 (146-184)||(25387665-25387703)
chr3 (146-184)||(26770000-26770038)
chr3 (146-184)||(52839378-52839416)
chr3 (65-106)||(54571293-54571334)
chr3 (148-184)||(19111021-19111057)
[»] chr2 (34 HSPs)
chr2 (31-200)||(42223156-42223325)
chr2 (65-200)||(16590583-16590716)
chr2 (41-200)||(41906132-41906289)
chr2 (65-200)||(35791130-35791264)
chr2 (65-184)||(31989489-31989607)
chr2 (68-200)||(11478052-11478184)
chr2 (92-264)||(11915181-11915352)
chr2 (65-181)||(31397395-31397510)
chr2 (65-184)||(31377684-31377803)
chr2 (117-200)||(41567315-41567397)
chr2 (121-173)||(29878811-29878863)
chr2 (146-184)||(17188731-17188769)
chr2 (146-183)||(15580626-15580663)
chr2 (84-144)||(23381343-23381403)
chr2 (83-182)||(959662-959761)
chr2 (69-140)||(13315985-13316055)
chr2 (147-186)||(18155450-18155489)
chr2 (146-184)||(15543794-15543832)
chr2 (146-184)||(16139057-16139095)
chr2 (146-184)||(16204388-16204426)
chr2 (146-184)||(19272920-19272958)
chr2 (146-184)||(25293416-25293453)
chr2 (146-184)||(30497407-30497445)
chr2 (146-200)||(35791059-35791112)
chr2 (146-184)||(38128019-38128057)
chr2 (117-178)||(24486596-24486657)
chr2 (149-190)||(30602594-30602635)
chr2 (146-190)||(7007848-7007892)
chr2 (148-184)||(9419579-9419615)
chr2 (147-179)||(11915102-11915134)
chr2 (146-182)||(18756432-18756468)
chr2 (159-187)||(19612242-19612270)
chr2 (146-190)||(31989427-31989471)
chr2 (146-182)||(39373219-39373255)
[»] chr7 (34 HSPs)
chr7 (41-196)||(9689291-9689446)
chr7 (41-187)||(43393849-43393996)
chr7 (31-200)||(1853233-1853398)
chr7 (31-200)||(42957424-42957593)
chr7 (50-200)||(3092292-3092441)
chr7 (41-190)||(15635228-15635378)
chr7 (92-245)||(2936144-2936294)
chr7 (65-190)||(45687698-45687822)
chr7 (50-161)||(11625113-11625224)
chr7 (92-200)||(24812925-24813032)
chr7 (109-200)||(19377100-19377191)
chr7 (65-190)||(15011935-15012060)
chr7 (65-200)||(27082594-27082728)
chr7 (65-200)||(27195573-27195707)
chr7 (91-200)||(25601798-25601906)
chr7 (92-196)||(10394471-10394574)
chr7 (116-184)||(28696661-28696729)
chr7 (81-179)||(27484941-27485040)
chr7 (92-200)||(14675581-14675681)
chr7 (117-179)||(22859342-22859404)
chr7 (147-200)||(2936339-2936391)
chr7 (146-184)||(2300901-2300938)
chr7 (146-200)||(8391027-8391079)
chr7 (146-184)||(17051895-17051933)
chr7 (146-184)||(21022469-21022507)
chr7 (146-200)||(27484820-27484872)
chr7 (146-184)||(35158262-35158299)
chr7 (146-199)||(15011865-15011917)
chr7 (65-106)||(18268280-18268321)
chr7 (115-200)||(25898629-25898713)
chr7 (78-119)||(26876617-26876658)
chr7 (148-184)||(21521895-21521931)
chr7 (146-182)||(35158440-35158476)
chr7 (148-184)||(47370412-47370448)
[»] chr4 (31 HSPs)
chr4 (41-196)||(13555668-13555823)
chr4 (31-200)||(5283732-5283900)
chr4 (31-200)||(8810010-8810178)
chr4 (51-190)||(42161367-42161507)
chr4 (68-200)||(49277727-49277858)
chr4 (68-186)||(49533201-49533319)
chr4 (91-200)||(16875937-16876045)
chr4 (65-200)||(9780392-9780528)
chr4 (91-200)||(16734243-16734350)
chr4 (100-200)||(8678889-8678989)
chr4 (117-179)||(25786326-25786388)
chr4 (91-199)||(21744891-21744998)
chr4 (120-183)||(29172618-29172681)
chr4 (146-184)||(16589236-16589274)
chr4 (136-177)||(18509185-18509226)
chr4 (149-190)||(29172756-29172797)
chr4 (147-199)||(49277880-49277931)
chr4 (146-184)||(3652529-3652567)
chr4 (146-200)||(9780546-9780599)
chr4 (146-184)||(27626925-27626963)
chr4 (146-184)||(29104419-29104457)
chr4 (146-200)||(29700563-29700616)
chr4 (146-184)||(36395414-36395452)
chr4 (218-264)||(44005712-44005757)
chr4 (146-184)||(49166902-49166940)
chr4 (147-197)||(49533131-49533180)
chr4 (147-200)||(23091876-23091928)
chr4 (157-190)||(37589620-37589653)
chr4 (148-184)||(18510242-18510278)
chr4 (110-181)||(19376596-19376667)
chr4 (148-184)||(30919175-30919211)
[»] scaffold0004 (1 HSPs)
scaffold0004 (52-197)||(82300-82444)
[»] chr8 (30 HSPs)
chr8 (52-200)||(9235440-9235587)
chr8 (51-264)||(23288999-23289212)
chr8 (31-200)||(5600247-5600413)
chr8 (31-200)||(5640207-5640373)
chr8 (65-181)||(13373258-13373373)
chr8 (31-161)||(14698164-14698293)
chr8 (68-182)||(24375771-24375884)
chr8 (48-172)||(24528887-24529011)
chr8 (115-190)||(11908474-11908549)
chr8 (68-187)||(23245660-23245779)
chr8 (120-182)||(8980741-8980803)
chr8 (99-190)||(12719159-12719249)
chr8 (118-200)||(28786366-28786447)
chr8 (146-200)||(13980023-13980076)
chr8 (146-184)||(10761679-10761717)
chr8 (146-184)||(25653784-25653822)
chr8 (146-178)||(28786519-28786551)
chr8 (147-183)||(28999510-28999546)
chr8 (157-200)||(24754628-24754670)
chr8 (146-184)||(9662273-9662311)
chr8 (146-184)||(11830433-11830471)
chr8 (146-184)||(12478831-12478869)
chr8 (146-184)||(13558799-13558837)
chr8 (146-184)||(32684641-32684679)
chr8 (146-184)||(34845363-34845401)
chr8 (146-184)||(41509459-41509497)
chr8 (118-183)||(25057020-25057085)
chr8 (146-183)||(36637251-36637288)
chr8 (148-184)||(2873708-2873744)
chr8 (148-184)||(34227587-34227623)
[»] chr1 (33 HSPs)
chr1 (31-179)||(25059885-25060033)
chr1 (48-200)||(5469440-5469592)
chr1 (92-200)||(13437010-13437117)
chr1 (65-200)||(33864186-33864321)
chr1 (65-200)||(33916601-33916736)
chr1 (41-200)||(17890132-17890290)
chr1 (117-200)||(7261505-7261587)
chr1 (127-264)||(22315145-22315282)
chr1 (111-200)||(44078710-44078798)
chr1 (70-181)||(24023179-24023289)
chr1 (110-180)||(44228454-44228524)
chr1 (100-192)||(5882997-5883089)
chr1 (117-190)||(15654059-15654132)
chr1 (79-182)||(16639555-16639659)
chr1 (118-181)||(22151971-22152034)
chr1 (110-173)||(23621217-23621280)
chr1 (110-173)||(23737996-23738059)
chr1 (117-173)||(23652563-23652619)
chr1 (150-200)||(9240531-9240580)
chr1 (146-184)||(19967820-19967858)
chr1 (117-200)||(9240654-9240736)
chr1 (146-184)||(21770981-21771019)
chr1 (28-106)||(22315288-22315365)
chr1 (146-184)||(23161905-23161942)
chr1 (146-184)||(26190988-26191026)
chr1 (146-184)||(27666174-27666212)
chr1 (146-200)||(33864115-33864168)
chr1 (146-200)||(33916754-33916807)
chr1 (146-200)||(44228339-44228392)
chr1 (141-190)||(6667399-6667448)
chr1 (146-183)||(22387224-22387261)
chr1 (114-182)||(15657992-15658060)
chr1 (148-184)||(44961264-44961300)
[»] chr6 (21 HSPs)
chr6 (31-190)||(9044531-9044690)
chr6 (48-190)||(25167002-25167144)
chr6 (48-181)||(9662835-9662968)
chr6 (69-200)||(3816552-3816681)
chr6 (117-179)||(33198608-33198670)
chr6 (109-178)||(20757615-20757684)
chr6 (146-264)||(3816703-3816820)
chr6 (150-200)||(33200018-33200067)
chr6 (117-181)||(6759742-6759806)
chr6 (117-200)||(334912-334993)
chr6 (146-184)||(1227934-1227972)
chr6 (146-184)||(2270742-2270780)
chr6 (147-189)||(18274361-18274403)
chr6 (146-184)||(21544388-21544426)
chr6 (146-184)||(29942605-29942642)
chr6 (147-184)||(686551-686587)
chr6 (146-183)||(16119918-16119955)
chr6 (147-184)||(22495780-22495817)
chr6 (146-183)||(31174052-31174089)
chr6 (148-184)||(7321840-7321876)
chr6 (130-178)||(12655187-12655234)
[»] scaffold0188 (1 HSPs)
scaffold0188 (111-264)||(13295-13447)
[»] scaffold0067 (1 HSPs)
scaffold0067 (64-179)||(25844-25960)
[»] scaffold0003 (1 HSPs)
scaffold0003 (110-184)||(306688-306762)
[»] scaffold0110 (1 HSPs)
scaffold0110 (91-178)||(23194-23281)
[»] scaffold0142 (2 HSPs)
scaffold0142 (135-190)||(34509-34564)
scaffold0142 (31-139)||(34884-34993)
[»] scaffold1462 (1 HSPs)
scaffold1462 (146-184)||(337-375)
[»] scaffold0022 (1 HSPs)
scaffold0022 (146-184)||(63111-63149)
[»] scaffold0010 (1 HSPs)
scaffold0010 (146-200)||(145149-145201)
[»] scaffold0002 (2 HSPs)
scaffold0002 (146-184)||(432475-432513)
scaffold0002 (148-184)||(332324-332360)
[»] scaffold0121 (1 HSPs)
scaffold0121 (148-184)||(12727-12763)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 37869412 - 37869917
Alignment:
Q  1 atcgctcactttagaagagcatgatcctaaaaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctct 100  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  37869412 atcgctcactttagaagagcctgatcctaaaaaatcaatgatatgggagggggtaaactgaaatatcgatgatatggcaggaggtaaatagaaattctct 37869511  T
Q  101 caaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37869512 caaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 37869611  T
Q  201 nnnnnnnnacaggggataaaccgaaaatcgttaatattactggagattaaacatatattaacccnnnnnnnatatcaagtccttttacatggtcctttnn 300  Q
            ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||||||||||||      
T  37869612 ttttttttacaggagataaaccgaaaatcgttaatattacaggagattaaacatatattaaccctttttttatatcaagtccttttacatggtcctttaa 37869711  T
Q  301 nnnnnngtaattttatatta-ttttttctttggtgaaaactacctttaaacaaacttgttacnnnnnnnnctctcgtaagtttaactcagttgatagaga 399  Q
          |||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||| ||||||||||| |||    
T  37869712 aaaaaagtaattttatattatttttttctttggtgaaaactacctttaaacaaacttgttac-tttttttctctcgtaagtttagctcagttgataaaga 37869810  T
Q  400 caaagttcgaggttcagacctcgaccaccnnnnnnnntttgttactttttagttaaaaatgaaatttgtgaagtttatgtgttaacgtaataaattttta 499  Q
    |||||||||||||||||| ||| ||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37869811 caaagttcgaggttcagatctcaaccaccaaaaaaaacttgttactttttagttaaaaatgaaatttgtgaagtttatgtgttaacgtaataaattttta 37869910  T
Q  500 ttatatt 506  Q
    |||||||    
T  37869911 ttatatt 37869917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 21144181 - 21144023
Alignment:
Q  41 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaattt 140  Q
    |||||| | |||||||||| |||||||||||||||  ||| |||||||   |||||||||||||||  ||||||||||||||| | ||||||||||||||    
T  21144181 atatggcaaggggtaaactaaaatatcgatgatatgacagagggtaaaccaaaattctctcaaattacaaggggcaaaagtacatcaaattttgtaattt 21144082  T
Q  141 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||    
T  21144081 gatgccatgaaggtccaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaa 21144023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 20355146 - 20355314
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    |||||| || |||||| |||||||||||  ||||||||||||||| ||||||||||||  |||||||  |||||||  ||||||||| ||||||||||||    
T  20355146 aaaatcgatgatatggtagggggtaaaccaaaatatcgatgatattgcagggggtaaaccgaaattccttcaaattacaaggggcaagagtaccttaaat 20355245  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||| |||||||||| ||| ||||| |||||||||| ||||||||||||||| | |||| |||||||||||    
T  20355246 tttttaatttgatgccatcaaggttcaaaatcaaaaaatcttcaaattacaggattgg-aatctaaacaa 20355314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 13153726 - 13153599
Alignment:
Q  72 atatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatct 171  Q
    |||| ||||||||||||  ||||||||||||||||  ||||| | |||||||| ||||||||||| |||||||  ||||||||||||||| ||  |||||    
T  13153726 atatggcagggggtaaaccgaaattctctcaaattacaagggacgaaagtaccgtaaattttgtattttgatgctatgaaggtccaaaataaagaaatct 13153627  T
Q  172 tcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||||| |||||||||||    
T  13153626 tcaaattacaaggttgg-aatctaaacaa 13153599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 264
Target Start/End: Complemental strand, 15399797 - 15399611
Alignment:
Q  80 gggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat--caaagaatcttcaaat 177  Q
    |||||||||| |||||| |||||||||  ||||||| ||||||||||||||||||||||||||||  |||||||||||||||   ||| |||||||||||    
T  15399797 gggggtaaatcgaaattatctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgttatgaaggtccaaaataaaaaaaaatcttcaaat 15399698  T
Q  178 tacaaggttggaaatctaaacaannnnnnnnaca-ggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 264  Q
    |||| ||||||  ||||||||||        ||| || | ||||||  |||||| ||||||||| ||||| |||||||||||||||||    
T  15399697 tacagggttgg-gatctaaacaaatttttttacatggaggtaaaccagaaatcgctaatattacaggagagtaaacatatattaaccc 15399611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 42778936 - 42779064
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||   ||||  ||||  ||||||||||||||||  ||||| | ||||||||||||||    
T  42778936 aaaatcaatgatatggcagggggtaacctgaaatatcgatgatatgataggga-taaaccgaaattctctcaaattacaaggg-cgaaagtaccttaaat 42779033  T
Q  131 tttgtaatttgatgacatgaaggtccaaaat 161  Q
    |||||||||||||| ||||||||||||||||    
T  42779034 tttgtaatttgatgtcatgaaggtccaaaat 42779064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 17668743 - 17668850
Alignment:
Q  92 aaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 191  Q
    |||||||||||||||  | ||||| |||||||||||||||||  | ||||||  |||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  17668743 aaattctctcaaattacagggggcgaaagtaccttaaattttaaattttgatatcatgaaagtccaaaatcaaagaatctttaaattacaatgtt-gaaa 17668841  T
Q  192 tctaaacaa 200  Q
    ||| |||||    
T  17668842 tcttaacaa 17668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 20628105 - 20628040
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 182  Q
    |||||||| ||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||    
T  20628105 aaagtaccataaattttgtaatttgatgccaagaaggtccaaaaccaaagaattttcaaattacaa 20628040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 31567818 - 31567882
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 181  Q
    |||||||  ||||||||||||||||||  ||||||||||||||| |||| |||||||||||||||    
T  31567818 aaagtactataaattttgtaatttgatatcatgaaggtccaaaaccaaaaaatcttcaaattaca 31567882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 38083002 - 38082947
Alignment:
Q  122 accttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 177  Q
    ||||||||||| |||||||||||  ||| |||| ||||||||||||||||||||||    
T  38083002 accttaaatttcgtaatttgatgctatgtaggttcaaaatcaaagaatcttcaaat 38082947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 35687402 - 35687296
Alignment:
Q  83 ggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaa-----aatcaaagaatcttcaaat 177  Q
    ||||||| ||||||  ||||||||   ||||||  ||||||  |||||||||||||||||||  ||||||||||||     ||||||| |||||||||||    
T  35687402 ggtaaatcgaaatttgctcaaatttacaggggcggaagtactataaattttgtaatttgatgctatgaaggtccaaaatgtaatcaaaaaatcttcaaat 35687303  T
Q  178 tacaagg 184  Q
    |||||||    
T  35687302 tacaagg 35687296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 38083061 - 38083095
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattac 180  Q
    |||||||||||||||||||||||||||||||||||    
T  38083061 catgaaggtccaaaatcaaagaatcttcaaattac 38083095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 4561717 - 4561682
Alignment:
Q  149 gaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4561717 gaaggtccaaaatcaaaaaatcttcaaattacaagg 4561682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 11721524 - 11721562
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  11721524 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 11721562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 23159692 - 23159730
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  23159692 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 23159730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 25919815 - 25919853
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  25919815 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 25919853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 29691216 - 29691254
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  29691216 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 29691254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 38874455 - 38874417
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  38874455 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 38874417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 41123261 - 41123223
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  41123261 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 41123223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 6527374 - 6527313
Alignment:
Q  125 ttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggtt 186  Q
    |||||||||||||||| ||| ||||||  ||||||| |||| ||||||||||| ||| ||||    
T  6527374 ttaaattttgtaattttatgtcatgaaaatccaaaaccaaataatcttcaaatcacagggtt 6527313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 10819501 - 10819465
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaa 182  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  10819501 catgaaggtctaaaatcaaaaaatcttcaaattacaa 10819465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 12148025 - 12147989
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    |||||||||||||| |||| |||||||||||||||||    
T  12148025 atgaaggtccaaaaccaaaaaatcttcaaattacaag 12147989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 18232018 - 18232062
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||||||| ||||| ||||||||||| |||||||| ||||||||    
T  18232018 catgaaggttcaaaaccaaagaatctttaaattacagggttggaa 18232062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 31567747 - 31567697
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||| |||| |||||||||||||||||| | |||||||||||||    
T  31567747 tgaaggtccaaaaccaaa-aatcttcaaattacaaggat-gaaatctaaacaa 31567697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 55257864 - 55257639
Alignment:
Q  40 aatatgggagggggtaaactgaaatatcgatgatatagcagggg-gtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaat 138  Q
    ||||||| | |||||||||||||||||||||||||| ||||||| |||||  |||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  55257864 aatatggcaaggggtaaactgaaatatcgatgatatggcaggggtgtaaactgaaattctatcaaattataaggggcgaaagtaccttaaattttgtaat 55257765  T
Q  139 ttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatatt 238  Q
    |||||| |||||||||||||||| ||| ||||||||||||| | |||||| |||||||||||        ||||||| ||||||| |||||| |||||||    
T  55257764 ttgatgccatgaaggtccaaaataaaaaaatcttcaaattatagggttgg-aatctaaacaattttttttacagggggtaaaccggaaatcgctaatatt 55257666  T
Q  239 ac-tggagattaaacatatattaaccc 264  Q
    ||  || |  |||||||||||||||||    
T  55257665 acagggggggtaaacatatattaaccc 55257639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 25125000 - 25124866
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    |||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||||  ||||||| ||||||||||||||    
T  25125000 aaaatcgatgatatggaagggggtaaactgaaatatcgatgatatggcagggggtaaactgaaattctcccaaattacaaggggcgaaagtaccttaaat 25124901  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaa 165  Q
    ||| |||||||||| ||||||||||||||||||||    
T  25124900 tttataatttgatgccatgaaggtccaaaatcaaa 25124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 43426358 - 43426505
Alignment:
Q  53 gtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 151  Q
    ||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||  | ||||||||||||||||||||||||||||||||||  |||||    
T  43426358 gtaaactgaaatatcgatgatatggcaggggggtaaaccgaaattctctcaaattacagggggcaaaagtaccttaaattttgtaatttgatgctatgaa 43426457  T
Q  152 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||| ||||||||| ||||||||||||||| |||| | |||||||||||    
T  43426458 ggtctaaaatcaaaaaatcttcaaattacagggttcg-aatctaaacaa 43426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 17582462 - 17582600
Alignment:
Q  50 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatg 149  Q
    ||||| ||||||||||||||| |||| ||||| ||||||  |||| |||||||||||  ||||||| ||||||||||||||||||||||||||||  |||    
T  17582462 ggggttaactgaaatatcgattatatggcaggaggtaaaccgaaaatctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgctatg 17582561  T
Q  150 aaggtccaaaat--caaagaatcttcaaattacaaggtt 186  Q
    ||||||||||||   ||| ||||||||||||||||||||    
T  17582562 aaggtccaaaataaaaaaaaatcttcaaattacaaggtt 17582600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 7308179 - 7308373
Alignment:
Q  69 atgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaa 168  Q
    ||||||| ||||||||||||  ||||||||||||||||  | ||||| |||||||||||||||||||||||||||| |||||||||| ||||| ||| ||    
T  7308179 atgatatggcagggggtaaaccgaaattctctcaaattaca-ggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtcaaaaataaaaaaa 7308277  T
Q  169 tcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactg-gagattaaacatatattaaccc 264  Q
    ||||||||||| | |||||| ||||| |||||        ||||||| ||||||  |||||| ||||||||| | | | ||||||||||||||||||    
T  7308278 tcttcaaattatagggttgg-aatctgaacaattttttttacagggggtaaaccagaaatcgctaatattacagaggggttaaacatatattaaccc 7308373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 23070176 - 23070058
Alignment:
Q  81 ggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattac 180  Q
    ||||||||| ||||||||||||||||  ||||||| ||||||||||||||||| |||||||||| || |||||| |||||||||| |||||| |||||||    
T  23070176 ggggtaaatcgaaattctctcaaattagaaggggcgaaagtaccttaaattttataatttgatgtcacgaaggttcaaaatcaaaaaatctttaaattac 23070077  T
Q  181 aaggttggaaatctaaacaa 200  Q
     ||||| |||||||||||||    
T  23070076 taggtt-gaaatctaaacaa 23070058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 17030660 - 17030869
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    ||||||||| |||||  ||| ||||| |||||||||||||||||| ||||| ||||||   |||||||||||| ||  | ||||  ||||||||||||||    
T  17030660 aaaatcaatgatatgtcaggtggtaacctgaaatatcgatgatatggcaggaggtaaaccaaaattctctcaatttaca-ggggtgaaagtaccttaaat 17030758  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacagggg-ataaaccgaaaat 228  Q
    |||||||||||||| ||||||||||||||||| ||| |||||| |||||| | |||| |||||| ||||||        ||||||| |||||||| ||||    
T  17030759 tttgtaatttgatgccatgaaggtccaaaatcaaaaaaatctttaaattagagggtt-gaaatcaaaacaaagttttttacaggggaataaaccggaaat 17030857  T
Q  229 cgttaatattac 240  Q
    || |||||||||    
T  17030858 cgctaatattac 17030869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 7013363 - 7013249
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    |||||||| || |||||||||||||  |||||||||||||||  | ||||| |||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  7013363 atcgatgacatggcagggggtaaatctaaattctctcaaattacatggggcgaaagtatcttaaattttgtaatttgataccatgaaagtccaaaatcaa 7013264  T
Q  165 agaatcttcaaatta 179  Q
    | |||||||||||||    
T  7013263 ataatcttcaaatta 7013249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 25159022 - 25159129
Alignment:
Q  92 aaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 191  Q
    |||||||||||||||  | | ||| ||| |||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| | ||    
T  25159022 aaattctctcaaattacaggaggcgaaaataccttaaattttgtaatttgatgccatgaacgtccaaaatcaaaaaatattcaaattacaaggttag-aa 25159120  T
Q  192 tctaaacaa 200  Q
    |||||||||    
T  25159121 tctaaacaa 25159129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 30226238 - 30226352
Alignment:
Q  68 gatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 167  Q
    ||||||||  |||||||||||   |||||  |||||| |  ||||||  |||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  30226238 gatgatatgacagggggtaaactaaaatttgctcaaactacaaggggtgaaagtaccataaattttgtaatttgttgtcatgaaggtccaaaatcaaaga 30226337  T
Q  168 atcttcaaattacaa 182  Q
    |||||||||||||||    
T  30226338 atcttcaaattacaa 30226352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 5303668 - 5303750
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||| || |||||||||||| |||||||||| |||| |||||||||||||||||||| |||||| |||||||||||    
T  5303668 aaagtaccttaagttctgtaatttgatgtcatgaaggtctaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 5303750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 37050164 - 37050265
Alignment:
Q  83 ggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgac-atgaaggtccaaaatcaaagaatcttcaaattaca 181  Q
    ||||||| ||||||  ||||||||  ||||||| ||||||||||||||||||||| |||||| | | ||| ||||||||||||||||||||||||||| |    
T  37050164 ggtaaatcgaaatttgctcaaattacaaggggcgaaagtaccttaaattttgtaa-ttgatgtcaaagaatgtccaaaatcaaagaatcttcaaattata 37050262  T
Q  182 agg 184  Q
    |||    
T  37050263 agg 37050265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 18359403 - 18359295
Alignment:
Q  91 gaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||||||||||||||  |  || | |||||||||||||||||||||||||||| |||| |  || ||||  ||||||||||||||||||| |||||| |    
T  18359403 gaaattctctcaaattacagcggactaaagtaccttaaattttgtaatttgatgccatgtatatctaaaactaaagaatcttcaaattacagggttgg-a 18359305  T
Q  191 atctaaacaa 200  Q
    ||||||||||    
T  18359304 atctaaacaa 18359295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 45008056 - 45008158
Alignment:
Q  80 gggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaatt 178  Q
    |||||||||  |||||| | |||||||  ||||||| ||||| |||||||||||||||||||||| || ||| |||||||||  ||| ||||||||||||    
T  45008056 gggggtaaaccgaaattttatcaaattacaaggggcgaaagttccttaaattttgtaatttgatgccaagaatgtccaaaataaaaaaaatcttcaaatt 45008155  T
Q  179 aca 181  Q
    |||    
T  45008156 aca 45008158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 1347704 - 1347666
Alignment:
Q  149 gaaggtccaaaatcaaagaatcttcaaattacaaggttg 187  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  1347704 gaaggtccaaaatcaaagaatattcaaattacaaggttg 1347666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 17030645 - 17030593
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||    
T  17030645 catgaaggtccaaaaccaaa-aatcttcaaattacaaggttgg-aatctaaacaa 17030593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 48689330 - 48689368
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  48689330 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 48689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 20275554 - 20275601
Alignment:
Q  113 ggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaa 160  Q
    ||||||| |||||||||||||| ||||||||| ||| |||||||||||    
T  20275554 ggcaaaaataccttaaattttgaaatttgatgtcataaaggtccaaaa 20275601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 300425 - 300463
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  300425 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 300463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 5572212 - 5572249
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  5572212 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 5572249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 13041480 - 13041442
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13041480 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13041442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 13049557 - 13049519
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13049557 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13049519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 18359450 - 18359503
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||| |||  ||||||||||| ||||||||||||| |||||||||||||    
T  18359450 catgaaggtctaaatccaaagaatctttaaattacaaggtt-gaaatctaaacaa 18359503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 25387703 - 25387665
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  25387703 catgaaggtctaaaatcaaagaatcttgaaattacaagg 25387665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 26770038 - 26770000
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  26770038 catgaaggtccaaaagcaaaaaatcttcaaattacaagg 26770000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 52839416 - 52839378
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  52839416 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 52839378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 54571334 - 54571293
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaatt 106  Q
    ||||||||||||||||||||||||  |||||| |||||||||    
T  54571334 atcgatgatatagcagggggtaaacggaaattttctcaaatt 54571293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 19111057 - 19111021
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  19111057 tgaaggtccaaaataaaaaaatcttcaaattacaagg 19111021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 42223156 - 42223325
Alignment:
Q  31 aaaatcaataatatgggaggg-ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaa 129  Q
    |||||| || |||||| |||| ||||||| ||||||| ||||||||  |||||||||||  |||||||| |||||||  ||||||| |||||||||||||    
T  42223156 aaaatcgatgatatggtagggtggtaaaccgaaatattgatgatatgtcagggggtaaaccgaaattctttcaaattacaaggggcgaaagtaccttaaa 42223255  T
Q  130 ttttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||| |||||||||||    
T  42223256 ttttgtaatttgatgccatgaaggttcaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaa 42223325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 16590583 - 16590716
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    ||||||||||||| ||||||||||| |||||||||||||||  || | ||| |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  16590583 atcgatgatatagtagggggtaaatcgaaattctctcaaata-taggaggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaaccaa 16590681  T
Q  165 agaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    | |||||||||||||| ||||| ||||| |||||||    
T  16590682 ataatcttcaaattac-aggtttgaaatataaacaa 16590716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 41906132 - 41906289
Alignment:
Q  41 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaattt 140  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||  ||  ||||  | ||||||||| ||||||||||||||    
T  41906132 atatggaagggggtaaactgaaatatcaatgatatggcagggggtaaactgaaattctctcatgttacaaggt-cgaaagtacctaaaattttgtaattt 41906230  T
Q  141 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||| ||| |||||||||||| ||| |||||||||||||||||||| ||||| |||||||    
T  41906231 gatgccataaaggtccaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 41906289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 35791130 - 35791264
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    ||||||||||| ||||||||||||  ||||| ||||||||||  || |||| |||||||||||||||||||||||||||| |||||||||  ||||||||    
T  35791130 atcgatgatatggcagggggtaaaccgaaatactctcaaattacaaagggcgaaagtaccttaaattttgtaatttgatggcatgaaggtttaaaatcaa 35791229  T
Q  165 agaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||| ||||||||  ||| |||||||||||||    
T  35791230 agaatctttaaattacagagtt-gaaatctaaacaa 35791264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 31989489 - 31989607
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    ||||||||||| ||||||| ||||  ||||||  |||| ||| || ||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||    
T  31989489 atcgatgatatggcagggg-taaactgaaatttgctcatattatagggggcgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaaccaa 31989587  T
Q  165 agaatcttcaaattacaagg 184  Q
    ||||||||||||||||||||    
T  31989588 agaatcttcaaattacaagg 31989607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 11478184 - 11478052
Alignment:
Q  68 gatgatatagcagg-gggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaag 166  Q
    |||||||| ||||| |||||||  |||||| || ||||||  ||| ||| ||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  11478184 gatgatatggcaggagggtaaaccgaaattatcccaaattacaagaggcgaaagtaccttaaattttgtaatttgatgctatgaaggtccaaaaccaaag 11478085  T
Q  167 aatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||| ||||||||||| |||| |||||||||||||    
T  11478084 aattttcaaattacagggtt-gaaatctaaacaa 11478052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 264
Target Start/End: Original strand, 11915181 - 11915352
Alignment:
Q  92 aaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 191  Q
    |||||||||||||||  | ||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |  ||| ||||    
T  11915181 aaattctctcaaattacacggggcgaaagtgccttaaattttgtaatttgatgtcatgaaggtccaaaaccaaaaaatcttcaaattatagagtt-gaaa 11915279  T
Q  192 tctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 264  Q
    | |||||||        |||||   |||||||||||| | ||||||||| || |  |||||||||||||||||    
T  11915280 tttaaacaatattttttacaggaagtaaaccgaaaattgctaatattacaggggggtaaacatatattaaccc 11915352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 31397395 - 31397510
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    |||||| |||| ||||||||||||| ||||| | ||||||||  ||||||| |||||| | ||||||||| ||||||| | ||||||||||||||| |||    
T  31397395 atcgataatatggcagggggtaaattgaaat-cgctcaaattacaaggggcgaaagtatcataaattttgaaatttgacgtcatgaaggtccaaaaccaa 31397493  T
Q  165 agaatcttcaaattaca 181  Q
    | |||||||||||||||    
T  31397494 ataatcttcaaattaca 31397510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 31377684 - 31377803
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    ||||||||||| ||||||| ||||   |||||  ||||||||  | | ||| |||||||  ||||||||||||| ||||| ||||||||||||||| |||    
T  31377684 atcgatgatatggcaggggttaaaccaaaatttgctcaaattacaggaggcgaaagtactataaattttgtaatatgatgccatgaaggtccaaaaccaa 31377783  T
Q  165 agaatcttcaaattacaagg 184  Q
    | ||||||||||||||||||    
T  31377784 ataatcttcaaattacaagg 31377803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 41567397 - 41567315
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||| ||||||||  ||| ||| ||||||||| || ||| |||||||||||||||| |||||||||||||    
T  41567397 aaagtaccttaaattttgaaatttgataccataaagatccaaaatcgaataattttcaaattacaaggtt-gaaatctaaacaa 41567315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 29878863 - 29878811
Alignment:
Q  121 taccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 173  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  29878863 taccataaattttgtaatttgatgccatgaatgtccaaaatcaaagaatcttc 29878811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 17188769 - 17188731
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  17188769 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 17188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 15580626 - 15580663
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    |||||||||||||||||||| |||||||||||||||||    
T  15580626 catgaaggtccaaaatcaaaaaatcttcaaattacaag 15580663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 23381343 - 23381403
Alignment:
Q  84 gtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatg 144  Q
    |||||| ||||||  ||||||||  ||||||| |||||||| |||||||||||||||||||    
T  23381343 gtaaatcgaaatttactcaaattacaaggggcgaaagtaccataaattttgtaatttgatg 23381403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 959662 - 959761
Alignment:
Q  83 ggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 182  Q
    ||||||| ||||||  ||||||||  |||| || |||||||||||||||||  ||||| ||| ||| ||||| |||||| ||| |||||| | |||||||    
T  959662 ggtaaattgaaatttgctcaaatttcaaggagcgaaagtaccttaaattttaaaatttaatgtcataaaggttcaaaattaaataatctttacattacaa 959761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 13315985 - 13316055
Alignment:
Q  69 atgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaattt 140  Q
    ||||||| ||||||||||||| |||||||| |||||||   | |||| ||||||||| ||||||||||||||    
T  13315985 atgatatggcagggggtaaatcgaaattctttcaaatt-acatgggcgaaagtacctgaaattttgtaattt 13316055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 18155450 - 18155489
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaaggtt 186  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  18155450 atgaaggtccaaaaccaaagaatcttcgaattacaaggtt 18155489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 15543832 - 15543794
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  15543832 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 15543794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 16139057 - 16139095
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  16139057 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 16139095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 16204426 - 16204388
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  16204426 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 16204388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 19272920 - 19272958
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  19272920 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 19272958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 25293453 - 25293416
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25293453 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 25293416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 30497407 - 30497445
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  30497407 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 30497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 35791112 - 35791059
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||| || ||||| ||||||||||| |||||| |||||||||||    
T  35791112 catgaaggtccaaaaacagagaatattcaaattacagggttgg-aatctaaacaa 35791059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 38128019 - 38128057
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  38128019 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 38128057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 24486657 - 24486596
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 178  Q
    |||||| ||||||||||| ||||||||| |||||| ||||||||  ||| ||| ||||||||    
T  24486657 aaagtatcttaaattttgaaatttgatgtcatgaaagtccaaaactaaacaattttcaaatt 24486596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 30602594 - 30602635
Alignment:
Q  149 gaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  30602594 gaaggtctaaaagcaaagaatctttaaattacaaggttggaa 30602635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 7007892 - 7007848
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||||||| |||| |||| |||||||||||||||||| |||||    
T  7007892 catgaaggtctaaaagcaaaaaatcttcaaattacaaggatggaa 7007848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 9419615 - 9419579
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  9419615 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 9419579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 11915134 - 11915102
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaatta 179  Q
    |||||||||||||| ||||||||||||||||||    
T  11915134 atgaaggtccaaaaccaaagaatcttcaaatta 11915102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 18756468 - 18756432
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaa 182  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  18756468 catgaaggtccaaaaccaaaaaatcttcaaattacaa 18756432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 19612242 - 19612270
Alignment:
Q  159 aatcaaagaatcttcaaattacaaggttg 187  Q
    |||||||||||||||||||||||||||||    
T  19612242 aatcaaagaatcttcaaattacaaggttg 19612270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 31989471 - 31989427
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||||||| |||| |||||| |||||||||||||||| |||||    
T  31989471 catgaaggtcgaaaaccaaagattcttcaaattacaaggatggaa 31989427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 39373219 - 39373255
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaa 182  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  39373219 catgaaggttcaaaatcaaaaaatcttcaaattacaa 39373255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 9689446 - 9689291
Alignment:
Q  41 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaattt 140  Q
    |||||| ||||||||||| ||||||| |||||||| | ||||||||||  ||||||||||||||||  ||||| ||||||||||||||||||| ||||||    
T  9689446 atatggtagggggtaaaccgaaatattgatgatatggtagggggtaaaccgaaattctctcaaattacaagggacaaaagtaccttaaattttataattt 9689347  T
Q  141 gatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaa 196  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  9689346 gatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacagggtt-gaaatctaa 9689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 43393849 - 43393996
Alignment:
Q  41 atatgggaggggg-taaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatt 139  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||  ||  ||||| | |||||||||||||||||||||||    
T  43393849 atatggaagggggataaactgaaatatcgatggtatagcagggggtaaactgaaattctctcacgttacaagggtcgaaagtaccttaaattttgtaatt 43393948  T
Q  140 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttg 187  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| |||||    
T  43393949 tgatgccatgaaggtccaaaataaaaaaatcttcaaattacagggttg 43393996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 1853233 - 1853398
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    |||||| || |||||  ||||||||||| |||||||||||||||  |||||||||||   ||||||||||||||||  | ||| | ||||||||||||||    
T  1853233 aaaatcgatgatatgacagggggtaaac-gaaatatcgatgataaggcagggggtaac--gaaattctctcaaatttcaggggacgaaagtaccttaaat 1853329  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  1853330 tttgaaatttgatgccatgaaggtccaaaatcaaaaaatcttcaaattacaaggttgg-aatctaaacaa 1853398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 42957593 - 42957424
Alignment:
Q  31 aaaatcaataatatgggagggg-gtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaa 129  Q
    ||||||||| |||| | ||||| ||||  ||||||||||| |||||  ||| |||||||| ||||||||||||||||  ||||| | |||||||||||||    
T  42957593 aaaatcaatgatatagcaggggagtaacatgaaatatcgaggatatgacagagggtaaatcgaaattctctcaaattacaagggacgaaagtaccttaaa 42957494  T
Q  130 ttttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||| |||||||||||||||||||| ||  ||||||||||| |||| | |||||||||||    
T  42957493 ttttgtaatttgatgtcatgaaggtccaaaatcaaaaaaaattcaaattacagggttag-aatctaaacaa 42957424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 3092441 - 3092292
Alignment:
Q  50 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatg 149  Q
    ||||||||  |||||||| ||||||| | ||||||||||  | |||||||||||||| || ||||  ||||||||||||||||| ||||||||||  |||    
T  3092441 ggggtaaatcgaaatatcaatgatatggaagggggtaaaccgtaattctctcaaattatagggggtgaaagtaccttaaattttataatttgatgtaatg 3092342  T
Q  150 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||  ||||||||| |||||| ||||||||||||| |||||||||||||    
T  3092341 aaggtttaaaatcaaaaaatctttaaattacaaggtt-gaaatctaaacaa 3092292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 15635228 - 15635378
Alignment:
Q  41 atatgggagggggtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatt 139  Q
    |||||| | ||||||||| |||||||||||||||| | |||||| ||||  ||||||||||||| || || ||||| |||||||| ||||||||| ||||    
T  15635228 atatggcatggggtaaaccgaaatatcgatgatatggtaggggggtaaaacgaaattctctcaagttatagggggcgaaagtaccataaattttgaaatt 15635327  T
Q  140 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||| ||| ||||| ||||||||||  ||||||||||||||  |||||||    
T  15635328 tgatggcataaaggttcaaaatcaaaatatcttcaaattacagagttggaa 15635378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 245
Target Start/End: Complemental strand, 2936294 - 2936144
Alignment:
Q  92 aaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 191  Q
    |||||||||||||||  | ||||| |||||||||||||||||||||||||||| |||||||||| |||| |||| ||| ||||||||||| |||||| ||    
T  2936294 aaattctctcaaattacagggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtctaaaaccaaataattttcaaattacatggttgg-aa 2936196  T
Q  192 tctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggag 245  Q
    ||||||||         |||||| ||||||||||||||| ||||||||| ||||    
T  2936195 tctaaaca--tttttttacagggcataaaccgaaaatcgctaatattacaggag 2936144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 45687822 - 45687698
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    |||||||||||  |||||| ||||   ||||||||||||||| || ||||  ||||||||||||||||| |||||||||| ||||||||| | |||||||    
T  45687822 atcgatgatatgacaggggataaaccaaaattctctcaaattatagggggtgaaagtaccttaaattttataatttgatgccatgaaggt-ctaaatcaa 45687724  T
Q  165 agaatcttcaaattacaaggttggaa 190  Q
    ||||||||||||||||| ||||||||    
T  45687723 agaatcttcaaattacagggttggaa 45687698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 11625113 - 11625224
Alignment:
Q  50 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatg 149  Q
    ||||||||| |||||||| ||||||| | ||||||||||  ||||||||| |||| |  ||||||| ||||||||||||||| |||||||||||| ||||    
T  11625113 ggggtaaaccgaaatatcaatgatatggtagggggtaaaccgaaattctcacaaactacaaggggcgaaagtaccttaaattatgtaatttgatgtcatg 11625212  T
Q  150 aaggtccaaaat 161  Q
    ||||||||||||    
T  11625213 aaggtccaaaat 11625224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 24812925 - 24813032
Alignment:
Q  92 aaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 191  Q
    ||||||| |||||||  |||||   |||||||||||||||||||||||||||| | | |||||| |||| |||||||||||||||||||| |||| ||||    
T  24812925 aaattctttcaaattacaagggatgaaagtaccttaaattttgtaatttgatgccttaaaggtctaaaaccaaagaatcttcaaattacagggtt-gaaa 24813023  T
Q  192 tctaaacaa 200  Q
    |||||||||    
T  24813024 tctaaacaa 24813032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 19377100 - 19377191
Alignment:
Q  109 aaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||  |||||||||||||| || | | |||||||||||    
T  19377100 aaggggcgaaagtaccttaaattttgtaatttgacgccatgaaggtccaaaataaaaatatcttcaaattacaggggttggaatctaaacaa 19377191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 15011935 - 15012060
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    ||||||||||| |||| |||||||  ||||||||||||||||     ||  |||| |||||| ||||||||||||||||| | |||| || |||||||||    
T  15011935 atcgatgatatggcagagggtaaaccgaaattctctcaaattaccgaggataaaaataccttgaattttgtaatttgatgccgtgaatgttcaaaatcaa 15012034  T
Q  165 agaatcttcaaattacaaggttggaa 190  Q
    ||||||||||||||||| | ||||||    
T  15012035 agaatcttcaaattacaggattggaa 15012060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 27082728 - 27082594
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    |||||| |||| ||||||||||||   ||||| |||||||||  | ||||| ||||||||||||| |||||||||||||  ||| || ||| |||| |||    
T  27082728 atcgataatatggcagggggtaaaccaaaattatctcaaattacagggggcgaaagtaccttaaactttgtaatttgatttcataaatgtctaaaaccaa 27082629  T
Q  165 agaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||| |||||  ||||| |||||||||||    
T  27082628 agaatcttcaagttacagtgttgg-aatctaaacaa 27082594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 27195573 - 27195707
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    |||||| |||| ||||||||||||   ||||| |||||||||  | ||||| ||||||||||||| |||||||||||||  ||| || ||| |||| |||    
T  27195573 atcgataatatggcagggggtaaaccaaaattatctcaaattacagggggcgaaagtaccttaaactttgtaatttgatttcataaatgtctaaaaccaa 27195672  T
Q  165 agaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||| |||||  ||||| |||||||||||    
T  27195673 agaatcttcaagttacagtgttgg-aatctaaacaa 27195707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 25601906 - 25601798
Alignment:
Q  91 gaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||||||| |||||  | ||||| ||||||| |||||||||||||||||||  |||||||||   ||  |||| |||||||||||||||||||||| |    
T  25601906 gaaattctctaaaattacagggggcgaaagtacattaaattttgtaatttgatatcatgaaggttttaagccaaaaaatcttcaaattacaaggttgg-a 25601808  T
Q  191 atctaaacaa 200  Q
    ||||||||||    
T  25601807 atctaaacaa 25601798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 10394574 - 10394471
Alignment:
Q  92 aaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 191  Q
    ||||||||||||||| ||| |||   |||| ||||||||||| ||||||||||  |||||| | ||||| ||||||||||||||||||||| ||| ||||    
T  10394574 aaattctctcaaattataaagggtggaagtgccttaaattttataatttgatgctatgaagatacaaaaccaaagaatcttcaaattacaaagtt-gaaa 10394476  T
Q  192 tctaa 196  Q
    |||||    
T  10394475 tctaa 10394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 28696661 - 28696729
Alignment:
Q  116 aaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||| ||| ||||||||||||||| | |||||||||||||||||||||| || |||||||||||    
T  28696661 aaaagtaccataagttttgtaatttgatgtcttgaaggtccaaaatcaaagaatattaaaattacaagg 28696729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 27484941 - 27485040
Alignment:
Q  81 ggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaatta 179  Q
    ||||||||  |||||||||||||||| ||  ||| ||||||| |||||||||| |||||| ||| ||||||| ||||||||  ||| |||||||||||||    
T  27484941 ggggtaaactgaaattctctcaaattatagagggtaaaagtatcttaaattttttaatttaatgccatgaagatccaaaataaaaaaaatcttcaaatta 27485040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 14675681 - 14675581
Alignment:
Q  92 aaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 191  Q
    |||||||||||||||  | ||||||||||||| ||||||||||  ||       |||||| |||||||||||||||||||||||||||||| ||| ||||    
T  14675681 aaattctctcaaattacagggggcaaaagtactttaaattttgatat-------catgaaagtccaaaatcaaagaatcttcaaattacaatgtt-gaaa 14675590  T
Q  192 tctaaacaa 200  Q
    ||| |||||    
T  14675589 tcttaacaa 14675581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 22859404 - 22859342
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 179  Q
    |||||||| |||||||||||| |||| | ||||||| ||||||| |||| |||||||||||||    
T  22859404 aaagtaccataaattttgtaacttgaagccatgaagatccaaaaccaaaaaatcttcaaatta 22859342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 2936339 - 2936391
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||| |||| |||||||||||||||||||| |||| |||||||||||||    
T  2936339 atgaaggtcgaaaaccaaagaatcttcaaattacatggtt-gaaatctaaacaa 2936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 2300938 - 2300901
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2300938 catgaaggtccaaaatcaa-gaatcttcaaattacaagg 2300901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 8391079 - 8391027
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||    
T  8391079 catgaaggtccaaaatcaaa-aatctacaaattacaaggatggaaa-ctaaacaa 8391027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 17051933 - 17051895
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  17051933 catgaaggtccaaaatcaaaaaatattcaaattacaagg 17051895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 21022507 - 21022469
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21022507 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21022469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 27484872 - 27484820
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||    
T  27484872 catgaagatccaaaatcaaa-aatcttcaaattacatggtt-gaaatctaaacaa 27484820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 35158299 - 35158262
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  35158299 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 35158262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 15011917 - 15011865
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaaca 199  Q
    |||| |||| ||||| |||||||||||||||||||| |||| ||||||||||||    
T  15011917 catgcaggttcaaaaccaaagaatcttcaaattacagggtt-gaaatctaaaca 15011865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 18268280 - 18268321
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaatt 106  Q
    ||||||||||||||||||||||||  ||||||| ||||||||    
T  18268280 atcgatgatatagcagggggtaaaccgaaattcgctcaaatt 18268321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 25898629 - 25898713
Alignment:
Q  115 caaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||| |||||| |||| ||||||||  |||   |||  |||||| |||||||||||||||||||||||  ||||||||||||    
T  25898629 caaaagtatcttaaagtttgaaatttgatatcatatgggtttaaaatcgaagaatcttcaaattacaaggtt-aaaatctaaacaa 25898713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 26876658 - 26876617
Alignment:
Q  78 cagggggtaaatagaaattctctcaaattctaaggggcaaaa 119  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  26876658 cagggggtaaattgaaattttctcaaattataaggggcaaaa 26876617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 21521931 - 21521895
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  21521931 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 21521895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 35158440 - 35158476
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaa 182  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  35158440 catgaaggtccaaaaccaaaaaatcttcaaattacaa 35158476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 47370412 - 47370448
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||| |||||| |||||||||||    
T  47370412 tgaaggtccaaaatcaaaaaatctttaaattacaagg 47370448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 13555823 - 13555668
Alignment:
Q  41 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaattt 140  Q
    |||||| ||||||||||| ||||||| |||||||| | ||||||||||  ||||||||||||||||  ||||| ||||||||||||||||||| ||||||    
T  13555823 atatggtagggggtaaaccgaaatattgatgatatggtagggggtaaaccgaaattctctcaaattacaagggacaaaagtaccttaaattttataattt 13555724  T
Q  141 gatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaa 196  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  13555723 gatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacagggtt-gaaatctaa 13555668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 5283732 - 5283900
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    |||||| || |||||| || |||||||  |||||||||||||||| ||||||||||||  |||||||  |||||||  ||||||||| ||||||||||||    
T  5283732 aaaatcgatgatatggtagagggtaaatcgaaatatcgatgatattgcagggggtaaaccgaaattccttcaaattacaaggggcaagagtaccttaaat 5283831  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||| |||||||||| ||||||||| |||||||||| ||||||||||||||| | |||| |||||||||||    
T  5283832 tttttaatttgatgccatgaaggttcaaaatcaaaaaatcttcaaattacaggattgg-aatctaaacaa 5283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 8810010 - 8810178
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    ||||||||| |||||  ||||||||| ||||||||||||||| ||   ||||||||||  |||||| |||||||||  | ||| | ||||||||||||||    
T  8810010 aaaatcaatgatatgacagggggtaacctgaaatatcgatgacatgatagggggtaaaccgaaattttctcaaattacacgggacgaaagtaccttaaat 8810109  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||| |||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||    
T  8810110 tttataatttgatgtcatgaaggtccaaaataaaaaaatcttcaaattacaaggtt-gaaatcttaacaa 8810178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 42161367 - 42161507
Alignment:
Q  51 gggtaaactgaaatatcgatgatatagcagg-gggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatg 149  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||  |||| || |||||||||||||||||||||||||||| | |     
T  42161367 gggtaaactgaaatatcgatgatatggcaggagggtaaatcgaaattctctcaaattacaaggagcgaaagtaccttaaattttgtaatttgatgccttc 42161466  T
Q  150 aaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||||||||| |||  |||||||||||||| | ||||||    
T  42161467 aaggtccaaaattaaaagatcttcaaattacaggattggaa 42161507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 49277858 - 49277727
Alignment:
Q  68 gatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 167  Q
    |||||||| ||||||||||||| ||||||||| ||||||  |  ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |    
T  49277858 gatgatatcgcagggggtaaattgaaattctcgcaaattacagagggcaaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaaccaaata 49277759  T
Q  168 atcttcaaattacaaggttggaaatctaaacaa 200  Q
    || ||||||||||| |||||| |||||||||||    
T  49277758 attttcaaattacacggttgg-aatctaaacaa 49277727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 49533201 - 49533319
Alignment:
Q  68 gatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 167  Q
    |||||||||| || || ||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |||| |    
T  49533201 gatgatataggagaggataaatcgaaattctctcaaattataaggggcaaaaatacgttaaattttgtaatttgatgtcatgaaggtccaaaaccaaata 49533300  T
Q  168 atcttcaaattacaaggtt 186  Q
    |||||||||||| ||||||    
T  49533301 atcttcaaattataaggtt 49533319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 16876045 - 16875937
Alignment:
Q  91 gaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||||||||||||||  | ||| ||||| |||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||| | |    
T  16876045 gaaattctctcaaattacaggggacaaaaataccttaaattttgtaatttgatgccataaaggtcgaaaatcaaagaatcttcaaactacaaggtt-gta 16875947  T
Q  191 atctaaacaa 200  Q
    ||||||||||    
T  16875946 atctaaacaa 16875937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 9780528 - 9780392
Alignment:
Q  65 atcgatgatatagcag--ggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc 162  Q
    ||||||||||| ||||  ||||||||  |||||| |||||||||  | |||   ||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  9780528 atcgatgatatggcagaaggggtaaaccgaaattatctcaaattacaggggatgaaagtaccttaaattttttaatttgatgccatgtaggtcgaaaatc 9780429  T
Q  163 aaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  9780428 aaagaatcttcaaattacagggttgg-aatctaaacaa 9780392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 16734243 - 16734350
Alignment:
Q  91 gaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||||||||||||||  | || || ||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||| |||    
T  16734243 gaaattctctcaaattacagggtgcgaaaataccttaaattttgtaattttatgccatgaaggtctaaaatcaaagaatcttcaaattac-aggtt-gaa 16734340  T
Q  191 atctaaacaa 200  Q
    ||||||||||    
T  16734341 atctaaacaa 16734350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 8678989 - 8678889
Alignment:
Q  100 tcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaattacaaggttggaaatctaaac 198  Q
    |||||||  ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||| | |||||||||    
T  8678989 tcaaattacaagaggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaataaaaaaaatcttcaaattacaaggtttg-aatctaaac 8678891  T
Q  199 aa 200  Q
    ||    
T  8678890 aa 8678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 25786326 - 25786388
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 179  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  25786326 aaagtaccttaaaatttgtaatttgatgccatgaaggttcaaaatcaaagaatcttcaaatta 25786388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 21744891 - 21744998
Alignment:
Q  91 gaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||||||||||||||  |||  || |||| |||| |||||||||||||| | | ||||||  ||||||| |||||||| ||||||||||| |||||| |    
T  21744891 gaaattctctcaaattacaagaagcgaaagcacctaaaattttgtaatttcacgtcatgaaaatccaaaaccaaagaatattcaaattacatggttgg-a 21744989  T
Q  191 atctaaaca 199  Q
    |||||||||    
T  21744990 atctaaaca 21744998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 29172681 - 29172618
Alignment:
Q  120 gtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    ||||||||||||||| || |||||| ||| |||||||||||| ||| ||||| |||||||||||    
T  29172681 gtaccttaaattttgaaacttgatgccattaaggtccaaaataaaaaaatctccaaattacaag 29172618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 16589236 - 16589274
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  16589236 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 16589274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 18509185 - 18509226
Alignment:
Q  136 aatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 177  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  18509185 aatttgatgtcatgaagatccaaaatcaaagaatcttcaaat 18509226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 29172756 - 29172797
Alignment:
Q  149 gaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  29172756 gaaggttcaaaaccaaagaatcttcaaattacaaggttggaa 29172797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 49277880 - 49277931
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaaca 199  Q
    |||||||| ||||| |||| |||||||||||||||||||||| ||||||||||    
T  49277880 atgaaggttcaaaaccaaataatcttcaaattacaaggttgg-aatctaaaca 49277931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 3652529 - 3652567
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  3652529 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 3652567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 9780546 - 9780599
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||| |||| ||||||||||||||| |||| | |||||||||||    
T  9780546 catgaaggtccaaaaccaaataatcttcaaattacatggtt-gtaatctaaacaa 9780599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 27626925 - 27626963
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27626925 catgaaggtccaaaagcaaaaaatcttcaaattacaagg 27626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 29104419 - 29104457
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  29104419 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 29104457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 29700616 - 29700563
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||| ||||| ||||||||||||||| ||| |||||| |||||||||||    
T  29700616 catgaaggtcaaaaattaaagaatcttcaaataacagggttgg-aatctaaacaa 29700563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 36395452 - 36395414
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  36395452 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 36395414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 44005757 - 44005712
Alignment:
Q  218 aaaccgaaaatcgttaatattactggagattaaacatatattaaccc 264  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  44005757 aaaccgaaaatcgctaatattactggaga-taaacatacattaaccc 44005712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 49166902 - 49166940
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  49166902 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 49166940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 49533180 - 49533131
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaa 197  Q
    ||||| ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  49533180 atgaaagtccaaaatgaaaaaatcttcaaattacaaggtt-gaaatctaaa 49533131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 23091876 - 23091928
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||| |||||  ||| |||||||||||||||||||||| |||||||||||    
T  23091876 atgaaggttcaaaactaaaaaatcttcaaattacaaggttgg-aatctaaacaa 23091928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 37589620 - 37589653
Alignment:
Q  157 aaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||||||||||||||||||||||| ||||||||    
T  37589620 aaaatcaaagaatcttcaaattacatggttggaa 37589653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 18510242 - 18510278
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  18510242 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 18510278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 19376596 - 19376667
Alignment:
Q  110 aggggcaaaagtacctta-aattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 181  Q
    |||||||||||||||||  ||||||||| ||||||| |||  | ||| ||||||||| |||||||||||||||    
T  19376596 aggggcaaaagtaccttttaattttgta-tttgatgtcattgaagtctaaaatcaaataatcttcaaattaca 19376667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 30919175 - 30919211
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  30919175 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 30919211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 82300 - 82444
Alignment:
Q  52 ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 151  Q
    |||||||  ||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| |||||||||||||||||||||||||||  ||||||    
T  82300 ggtaaaccaaaatatcgatgatatagcagggggtaaaccgaaattctctcaaattacatggggcgaaagtaccttaaattttgtaatttgatatcatgaa 82399  T
Q  152 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaa 197  Q
    |||||||||||||| |||||| |||||| |||| | ||||||||||    
T  82400 ggtccaaaatcaaacaatctttaaatta-aagggttgaaatctaaa 82444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 9235440 - 9235587
Alignment:
Q  52 ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 151  Q
    ||||||| ||||||||||||||||  || ||| ||||   ||||||| |||||||  ||||||| |||||||||||||||||||||||||||| ||||||    
T  9235440 ggtaaaccgaaatatcgatgatatgtcaagggttaaaccaaaattctttcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaa 9235539  T
Q  152 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||    
T  9235540 ggtccaaaatcaaaaaatcttcaaattacagggtt-gaaatctaaacaa 9235587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 51 - 264
Target Start/End: Original strand, 23288999 - 23289212
Alignment:
Q  51 gggtaaactgaaatatcgatgatatagcaggggg---taaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgaca 147  Q
    |||| ||| ||||||||||||||||  |||||||   |||| |||||||||||||||||  | ||| | |||||||||||||||||||||||||||| ||    
T  23288999 gggtgaaccgaaatatcgatgatatgacaggggggattaaacagaaattctctcaaattacaggggacgaaagtaccttaaattttgtaatttgatgcca 23289098  T
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggagat 247  Q
    |||||||||||| | ||| ||||||||||||||| |||||| |||||||||||        |||||||||||||||||||||  ||||||||| || |      
T  23289099 tgaaggtccaaagttaaaaaatcttcaaattacagggttgg-aatctaaacaattttttttacaggggataaaccgaaaatcactaatattacagggg-- 23289195  T
Q  248 taaacatatattaaccc 264  Q
     ||||||||||||||||    
T  23289196 caaacatatattaaccc 23289212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 5600247 - 5600413
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    |||||| ||||||||| || |||||||||||| |||| |||||||||||||||| ||   |||||||||| ||||| || ||||| |||||||||| |||    
T  5600247 aaaatcgataatatggcagagggtaaactgaactatcaatgatatagcaggggg-aatccgaaattctctaaaattata-ggggcgaaagtaccttcaat 5600344  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||| |||||| ||||||| |  ||||| ||| |||||||||||||||||||| ||||| |||||||    
T  5600345 tttgtaacttgatgccatgaagatttaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 5600413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 5640373 - 5640207
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    |||||| ||||||||| || |||||||||||| |||| |||||||||||||||| ||   |||||||||| ||||| || ||||| |||||||||| |||    
T  5640373 aaaatcgataatatggcagagggtaaactgaactatcaatgatatagcaggggg-aatccgaaattctctaaaattata-ggggcgaaagtaccttcaat 5640276  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||| |||||| ||||||| |  ||||| ||| |||||||||||||||||||| ||||| |||||||    
T  5640275 tttgtaacttgatgccatgaagatttaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 5640207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 13373373 - 13373258
Alignment:
Q  65 atcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 164  Q
    ||||||||||||||||||| || |  | ||||||||||||||  ||||||||||| |||||||||||||||||||||||| || |||||| ||||| |||    
T  13373373 atcgatgatatagcagggg-tacaccggaattctctcaaattacaaggggcaaaaataccttaaattttgtaatttgatgccaggaaggttcaaaaccaa 13373275  T
Q  165 agaatcttcaaattaca 181  Q
    |||||||||||||||||    
T  13373274 agaatcttcaaattaca 13373258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 14698164 - 14698293
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    ||||||||| |||||| | ||||||| |||||||||||||||||| |||||||| |||  |||||| |||||||||  || || ||||||||||||||||    
T  14698164 aaaatcaatgatatggcaaggggtaacctgaaatatcgatgatatggcagggggcaaactgaaattttctcaaattacaaaggacaaaagtaccttaaat 14698263  T
Q  131 tttgtaatttgatgacatgaaggtccaaaat 161  Q
    ||| ||| |||||| |||||||||| |||||    
T  14698264 tttataa-ttgatgccatgaaggtctaaaat 14698293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 24375884 - 24375771
Alignment:
Q  68 gatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 167  Q
    |||||||| ||||||||||||  ||||||  ||||||||  ||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||| |    
T  24375884 gatgatatggcagggggtaaactgaaatttgctcaaattacaagggacgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaa-caaaaa 24375786  T
Q  168 atcttcaaattacaa 182  Q
    |||||||||||||||    
T  24375785 atcttcaaattacaa 24375771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 24528887 - 24529011
Alignment:
Q  48 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgaca 147  Q
    |||||||||||||||||||||||||||| | ||||||||||  || ||||||| |||||  || |||| ||| ||| ||||||||| |||||||||| ||    
T  24528887 agggggtaaactgaaatatcgatgatatggtagggggtaaaccgagattctctaaaattacaaagggcgaaaatactttaaattttataatttgatgcca 24528986  T
Q  148 tgaaggtccaaaatcaaagaatctt 172  Q
     |||||| |||||| ||| ||||||    
T  24528987 cgaaggtacaaaataaaaaaatctt 24529011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 11908549 - 11908474
Alignment:
Q  115 caaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||| || ||||||||||||||||| ||||||||    
T  11908549 caaaagtaccttaaattttgaaatttgatgccatgaaggtcctaaaccatagaatcttcaaattacatggttggaa 11908474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 23245660 - 23245779
Alignment:
Q  68 gatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 167  Q
    |||||||| ||| ||||||||  |||||| |||||||||  | ||||| |||||||||||||||||  ||||| ||| |||  ||||||||||||||| |    
T  23245660 gatgatatggcaaggggtaaaacgaaattatctcaaattacatggggcgaaagtaccttaaattttaaaatttaatgccatataggtccaaaatcaaaaa 23245759  T
Q  168 atcttcaaattacaaggttg 187  Q
    |||||||||||||| |||||    
T  23245760 atcttcaaattacagggttg 23245779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 8980741 - 8980803
Alignment:
Q  120 gtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 182  Q
    ||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  8980741 gtaccataaattttgtaatttgatgtcatgaaggtccaaaactaaagaatcttcaaattacaa 8980803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 12719249 - 12719159
Alignment:
Q  99 ctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||||||  ||||||| |||||| | | ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||    
T  12719249 ctcaaattacaaggggcgaaagtatcatcaattttgaaatttgatgtcatgaaggtccaaaaccaaagaat-ttcaaattacaaggatggaa 12719159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 28786447 - 28786366
Alignment:
Q  118 aagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||| |||| || |||||| |||||||||||||||||||| ||||||| | ||||| |||||| |||||||||||    
T  28786447 aagtaccttaaagtttgaaaattgatgccatgaaggtccaaaatcaaataatcttctagttacagggttgg-aatctaaacaa 28786366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 13980023 - 13980076
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  13980023 catgaaggtccaaaatcaaagaatcttcaaattacagggttag-aatctaaacaa 13980076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 10761679 - 10761717
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  10761679 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 10761717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 25653822 - 25653784
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25653822 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 25653784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 28786519 - 28786551
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaatt 178  Q
    |||||||||||||||||||||||||||||||||    
T  28786519 catgaaggtccaaaatcaaagaatcttcaaatt 28786551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 28999510 - 28999546
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    |||||||||| ||||||||||||||||||||||||||    
T  28999510 atgaaggtcccaaatcaaagaatcttcaaattacaag 28999546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 24754670 - 24754628
Alignment:
Q  157 aaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  24754670 aaaatcaaagaatcttcaaattacatggttgg-aatctaaacaa 24754628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 9662311 - 9662273
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  9662311 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 9662273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 11830433 - 11830471
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  11830433 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 11830471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 12478831 - 12478869
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  12478831 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 12478869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 13558799 - 13558837
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13558799 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13558837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 32684679 - 32684641
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  32684679 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 32684641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 34845401 - 34845363
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  34845401 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 34845363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 41509497 - 41509459
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  41509497 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 41509459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 25057085 - 25057020
Alignment:
Q  118 aagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    ||||| |||| |||||| |||||||||  |||||| | |||||  |||||||||||||||||||||    
T  25057085 aagtatcttacattttgaaatttgatgtgatgaagattcaaaactaaagaatcttcaaattacaag 25057020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 36637251 - 36637288
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  36637251 catgaaggtccaaaatcaaaaaatcttcatattacaag 36637288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 2873708 - 2873744
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  2873708 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 2873744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 34227587 - 34227623
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  34227587 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 34227623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 25060033 - 25059885
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||  |||||||||||  ||||| ||||||||||  ||||||| ||| ||||||||||    
T  25060033 aaaatcaatgatatggcagggggtaacctgaaatatcgatgatatgacagggggtaaaccgaaatgctctcaaattacaaggggcgaaaataccttaaat 25059934  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 179  Q
    |||||||||||||| | |||||||||||||||||| ||| || ||||||    
T  25059933 tttgtaatttgatgtcttgaaggtccaaaatcaaaaaatatttaaatta 25059885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 5469440 - 5469592
Alignment:
Q  48 agggggtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgac 146  Q
    ||||| |||| ||||||||| ||||||||| |||||| ||||  |||||||||||| |||  | ||||||||| |||||||||||||||| ||||||| |    
T  5469440 aggggataaattgaaatatcaatgatatagtaggggggtaaaccgaaattctctcatattacagggggcaaaaataccttaaattttgtagtttgatgcc 5469539  T
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||||||| ||  |||||||||||||||||| |||||||||||    
T  5469540 atgaaggtccaaaatcaaaaaaaattcaaattacaaggttgg-aatctaaacaa 5469592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 13437010 - 13437117
Alignment:
Q  92 aaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 191  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||| ||    
T  13437010 aaattctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaatcatcaaattacacggttgg-aa 13437108  T
Q  192 tctaaacaa 200  Q
    |||||||||    
T  13437109 tctaaacaa 13437117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 33864186 - 33864321
Alignment:
Q  65 atcgatgatatagcag-ggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatca 163  Q
    ||||||||||| |||| ||||||||  |||||||||  |||||  | | ||| ||| |||||||||||||||||||||||| ||| ||||||||||| ||    
T  33864186 atcgatgatatcgcagaggggtaaaccgaaattctcgaaaattacaggaggcgaaaataccttaaattttgtaatttgatgccataaaggtccaaaacca 33864285  T
Q  164 aagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||| |||||| |||||||||||    
T  33864286 aagaatcttcaaattacagggttgg-aatctaaacaa 33864321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 33916736 - 33916601
Alignment:
Q  65 atcgatgatatagcag-ggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatca 163  Q
    ||||||||||| |||| ||||||||  |||||||||  |||||  | | ||| ||| |||||||||||||||||||||||| ||| ||||||||||| ||    
T  33916736 atcgatgatatcgcagaggggtaaaccgaaattctcgaaaattacaggaggcgaaaataccttaaattttgtaatttgatgccataaaggtccaaaacca 33916637  T
Q  164 aagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||| |||||| |||||||||||    
T  33916636 aagaatcttcaaattacagggttgg-aatctaaacaa 33916601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 17890290 - 17890132
Alignment:
Q  41 atatgggagggggtaaactgaaatatcgatgatatagcaggg-ggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatt 139  Q
    |||||| | ||||||||||||||||||||||||||  ||  | ||||||  ||||||||||||||||  || || |  ||||||||||||||||||||||    
T  17890290 atatggcaaggggtaaactgaaatatcgatgatatgacatagaggtaaaccgaaattctctcaaattacaatggacggaagtaccttaaattttgtaatt 17890191  T
Q  140 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||  |||| | |||||||| ||| |||||| |||||||| |||||| |||||||||||    
T  17890190 tgatgctatgaggatccaaaat-aaaaaatctttaaattacagggttgg-aatctaaacaa 17890132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 7261505 - 7261587
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||    
T  7261505 aaagtaccttcaattttgaaatttgatgtcatgaaggtccaaaaccaaagaatgttcaaattacagggttgg-aatctaaacaa 7261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 127 - 264
Target Start/End: Complemental strand, 22315282 - 22315145
Alignment:
Q  127 aaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa-nnnnnnnnacaggggataaaccgaa 225  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||         ||||||  ||||||  |    
T  22315282 aaattttgtaatatgatgccatgaaggtccaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaatttttttttacagggagtaaaccaga 22315184  T
Q  226 aatcgttaatattactggagattaaacatatattaaccc 264  Q
    ||||| ||||||||| || || |||||||||||||||||    
T  22315183 aatcgctaatattacaggggagtaaacatatattaaccc 22315145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 44078710 - 44078798
Alignment:
Q  111 ggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||||||||| ||||| |||  | ||||||||||||  |||| ||||||||||||||||||||| |||||||||||    
T  44078710 ggggcaaaagtaccttaaattttgaaattttatgttaggaaggtccaaaacaaaaggatcttcaaattacaaggttgg-aatctaaacaa 44078798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 24023179 - 24023289
Alignment:
Q  70 tgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaat 169  Q
    |||||||| ||||| ||||| ||||||| |||||| |  ||||||||||| |||||||||||||  ||||||||| | ||||||||||||| |||| |||    
T  24023179 tgatatagtaggggataaatcgaaattcgctcaaaataaaaggggcaaaaataccttaaattttcaaatttgatgtcgtgaaggtccaaaaccaaataat 24023278  T
Q  170 cttcaaattaca 181  Q
    ||| ||||||||    
T  24023279 ctt-aaattaca 24023289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 44228454 - 44228524
Alignment:
Q  110 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattac 180  Q
    |||||| |||||||||||||||||| ||||||||| || |||||||||||  |||||||||||||||||||    
T  44228454 aggggcgaaagtaccttaaattttgaaatttgatgccacgaaggtccaaacccaaagaatcttcaaattac 44228524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 5882997 - 5883089
Alignment:
Q  100 tcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaat 192  Q
    ||||||| | |||||| |||||||||||||||||  ||||||||| ||||||||| ||||  |||| |||||| |||||||||||||| ||||    
T  5882997 tcaaattatgaggggcgaaagtaccttaaattttaaaatttgatgtcatgaaggtacaaagccaaataatcttaaaattacaaggttgaaaat 5883089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 15654132 - 15654059
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||||||||| ||||| ||||||||| |  |||||| |||||||||||||| |||||||||||| |||||||    
T  15654132 aaagtaccttaagttttgaaatttgatgtccagaaggttcaaaatcaaagaattttcaaattacaaagttggaa 15654059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 16639659 - 16639555
Alignment:
Q  79 agggggtaaatagaaattctctcaaatt-ctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 177  Q
    ||||||||||   ||||| ||||||||| | ||||||| |||||||| |||||||||||||||||   ||| |||||| |||| ||||||||||| ||||    
T  16639659 agggggtaaaccaaaattttctcaaattacaaaggggcgaaagtaccataaattttgtaatttgacatcataaaggtcaaaaaccaaagaatctttaaat 16639560  T
Q  178 tacaa 182  Q
    |||||    
T  16639559 tacaa 16639555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 22152034 - 22151971
Alignment:
Q  118 aagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 181  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||  ||| |||||||||||||||    
T  22152034 aagtaccataaattttgcaatttgatgtcatgaaggtccaaaacaaaaaaatcttcaaattaca 22151971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 23621280 - 23621217
Alignment:
Q  110 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 173  Q
    |||||| ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23621280 aggggcgaaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23621217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 23738059 - 23737996
Alignment:
Q  110 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 173  Q
    |||||| ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23738059 aggggcgaaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23737996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 23652619 - 23652563
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 173  Q
    ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23652619 aaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23652563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 9240580 - 9240531
Alignment:
Q  150 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  9240580 aaggtccaaaatcaaagaatcttcaaattacagggtt-caaatctaaacaa 9240531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 19967820 - 19967858
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  19967820 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 19967858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 9240654 - 9240736
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||||  |||||||||| |||||||||  ||||   |||||||||||| ||||| |||| | |||||||||||    
T  9240654 aaagtaccttaaatttcataatttgatgccatgaaggtttaaaactgaagaatcttcaagttacagggtttg-aatctaaacaa 9240736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 21770981 - 21771019
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21770981 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21771019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 22315365 - 22315288
Alignment:
Q  28 taaaaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaatt 106  Q
    |||||||||||| |||||  ||||| ||  |||||||||||||||||| | ||||||||||  |||||| |||||||||    
T  22315365 taaaaaatcaatgatatgacagggg-taccctgaaatatcgatgatatggaagggggtaaactgaaattttctcaaatt 22315288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 23161942 - 23161905
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23161942 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 23161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 26190988 - 26191026
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  26190988 catgaaggtccaaaatcaaaaaatcttcaaattataagg 26191026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 27666174 - 27666212
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27666174 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 27666212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 33864168 - 33864115
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||| | ||||| |||||||||||||||||||| |||||| |||||||||||    
T  33864168 catgaagattcaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 33864115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 33916754 - 33916807
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||| | ||||| |||||||||||||||||||| |||||| |||||||||||    
T  33916754 catgaagattcaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 33916807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 44228392 - 44228339
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||||||||||| ||||||||||| |||||||| |||| | |||||||||||    
T  44228392 catgaaggtccaaaaccaaagaatctttaaattacagggtt-gtaatctaaacaa 44228339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 6667448 - 6667399
Alignment:
Q  141 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||||| | |||| ||||| ||| ||||||||||||||||||||||||    
T  6667448 gatgacatcagggtctaaaatgaaataatcttcaaattacaaggttggaa 6667399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 22387261 - 22387224
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  22387261 catgaaggtccaaaaccaaaaaatcttcaaattacaag 22387224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 15658060 - 15657992
Alignment:
Q  114 gcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 182  Q
    |||| |||||||||| ||||| ||||| ||| || | |||| ||||| ||||||||||||| |||||||    
T  15658060 gcaagagtaccttaagttttgaaatttaatgtcacggaggttcaaaaccaaagaatcttcagattacaa 15657992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 44961264 - 44961300
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  44961264 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 44961300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 9044531 - 9044690
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaat 130  Q
    |||||| || |||||| | |||||||||||||||||||||||||| ||||||||||||   |||||||||||||||    | ||  |||||| |||||||    
T  9044531 aaaatcgatgatatggcaaggggtaaactgaaatatcgatgatatggcagggggtaaaccaaaattctctcaaattacgggaggtgaaagtatcttaaat 9044630  T
Q  131 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    | | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  9044631 tatataatttgatgccatgaaggtccaaaatcaaataatcttcaaattacaaggttggaa 9044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 25167002 - 25167144
Alignment:
Q  48 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgaca 147  Q
    |||||||||||||||||||||||  ||| || || ||||||  ||||||||||||||||  ||||| | |||||||||||||||||||||||||||| ||    
T  25167002 agggggtaaactgaaatatcgatcctatggcgggaggtaaaccgaaattctctcaaattacaagggacgaaagtaccttaaattttgtaatttgatgcca 25167101  T
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    ||||| |||||||||||| |||||||||||||||  |||||||    
T  25167102 tgaagatccaaaatcaaataatcttcaaattacacagttggaa 25167144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 9662835 - 9662968
Alignment:
Q  48 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgaca 147  Q
    |||||||||||  ||||||| |||||||  || ||||||||  ||||||||||||||||  | |||||||||||||||||||||||||||||||||| ||    
T  9662835 agggggtaaaccaaaatatcaatgatatgacaaggggtaaactgaaattctctcaaattacagggggcaaaagtaccttaaattttgtaatttgatgtca 9662934  T
Q  148 tgaaggtccaaaatcaaagaatcttcaaattaca 181  Q
    ||||||| |||||||||| |||||||||||||||    
T  9662935 tgaaggttcaaaatcaaaaaatcttcaaattaca 9662968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 3816681 - 3816552
Alignment:
Q  69 atgatatagcagggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaa 168  Q
    ||||||||||||| ||||||   ||||| |||||||||  | ||||| ||||||||||||||||| |||||||||| ||||||| | ||||| |||||||    
T  3816681 atgatatagcaggaggtaaaccaaaattttctcaaattacagggggcgaaagtaccttaaattttataatttgatgccatgaagattcaaaaccaaagaa 3816582  T
Q  169 tcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||| ||||||  ||||||| |||||||||||    
T  3816581 tctttaaatta-taggttgg-aatctaaacaa 3816552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 33198670 - 33198608
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 179  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||    
T  33198670 aaagtgccttaaattttgtaatttgatgccatgaatgtctaaaaccaaagaatcttcaaatta 33198608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 20757615 - 20757684
Alignment:
Q  109 aaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 178  Q
    ||||||| |||||||||||| ||||||||||||||| |||||| | |||||| |||| ||||||||||||    
T  20757615 aaggggcgaaagtaccttaagttttgtaatttgatgtcatgaacgaccaaaaccaaaaaatcttcaaatt 20757684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 3816703 - 3816820
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggag 245  Q
    |||||||||| |||| |||||||||||||||||||| |||| |||||||||||||        ||||||| ||||||  |||||| |||||||||  |||    
T  3816703 catgaaggtcaaaaaccaaagaatcttcaaattacagggtt-gaaatctaaacaattttttttacagggggtaaaccagaaatcgctaatattacatgag 3816801  T
Q  246 attaaacatatattaaccc 264  Q
      ||||||| |||||||||    
T  3816802 gataaacatgtattaaccc 3816820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 33200018 - 33200067
Alignment:
Q  150 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  33200018 aaggtccaaaatcaaagaatcttcaaattacagggtt-gtaatctaaacaa 33200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 6759806 - 6759742
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 181  Q
    |||||||||||||||||| ||||||||  ||||||  |||||||  |||||||| ||||||||||    
T  6759806 aaagtaccttaaattttgaaatttgatctcatgaaaatccaaaactaaagaatcatcaaattaca 6759742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 334993 - 334912
Alignment:
Q  117 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    ||||||| ||||||||| |||||| ||| |||||| |||| |||  ||| ||||||||||||||||||||  ||||||||||||    
T  334993 aaagtactttaaattttataatttaatgtcatgaatgtcctaaactaaa-aatcttcaaattacaaggtt-aaaatctaaacaa 334912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 1227934 - 1227972
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  1227934 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 1227972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 2270742 - 2270780
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2270742 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 2270780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 18274361 - 18274403
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaaggttgga 189  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  18274361 atgaaagttcaaaatcaaagaatcttcaaattacagggttgga 18274403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 21544388 - 21544426
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21544388 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21544426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 29942642 - 29942605
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  29942642 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 29942605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 686551 - 686587
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  686551 atgaaggtccaaaatcaaa-aatcttcaaattacaagg 686587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 16119918 - 16119955
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  16119918 catgaaggtccaaaaccaaaaaatcttcaaattacaag 16119955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 22495817 - 22495780
Alignment:
Q  147 atgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  22495817 atgaaggtccaaaaccaaaaaatcttcaaattacaagg 22495780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 31174089 - 31174052
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaag 183  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  31174089 catgaaggtctaaaatcaaaaaatcttcaaattacaag 31174052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 7321876 - 7321840
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  7321876 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 7321840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 12655234 - 12655187
Alignment:
Q  130 ttttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 178  Q
    ||||||||||||||| |||||||||| |||| |||| ||||||||||||    
T  12655234 ttttgtaatttgatg-catgaaggtctaaaaccaaataatcttcaaatt 12655187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 111 - 264
Target Start/End: Original strand, 13295 - 13447
Alignment:
Q  111 ggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnna 209  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||        |    
T  13295 ggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacaaggttgg-aatctaaacaaattttttta 13393  T
Q  210 caggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 264  Q
    |||||| |||||| ||||||| ||||||||| || |  |||||||||||||||||    
T  13394 cagggggtaaaccaaaaatcgctaatattacagg-gggtaaacatatattaaccc 13447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 25844 - 25960
Alignment:
Q  64 tatcgatgatatagcaggg-ggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc 162  Q
    ||||||||||||  ||||| ||||||  ||||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  25844 tatcgatgatatgacagggtggtaaaccgaaattctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaatc 25943  T
Q  163 aaagaatcttcaaatta 179  Q
    ||| || ||||||||||    
T  25944 aaaaaaccttcaaatta 25960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 306688 - 306762
Alignment:
Q  110 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  306688 aggggcgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaaccaaagaatcttcaaattacaagg 306762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 23281 - 23194
Alignment:
Q  91 gaaattctctcaaattctaaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 178  Q
    |||||||||||||||| ||  ||||  || ||| |||||||||||||||||||| |||||||||| ||||||||| | ||||||||||    
T  23281 gaaattctctcaaattatagagggcggaaatacgttaaattttgtaatttgatgccatgaaggtctaaaatcaaaaagtcttcaaatt 23194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 34564 - 34509
Alignment:
Q  135 taatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 190  Q
    |||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||    
T  34564 taatttgatgccatgaaggtccaagatcaaaaaatcttaaaattacaaggttggaa 34509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 34993 - 34884
Alignment:
Q  31 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcag-ggggtaaatagaaattctctcaaattctaaggggcaaaagtaccttaaa 129  Q
    |||||| || |||||  |||||||||||||||||||| |||||||  ||| ||||||||   |||| ||||||||||  | ||||  |||||||||||||    
T  34993 aaaatcgatgatatgatagggggtaaactgaaatatctatgatatgacagaggggtaaaccaaaatactctcaaattacatggggagaaagtaccttaaa 34894  T
Q  130 ttttgtaatt 139  Q
    |||| |||||    
T  34893 ttttttaatt 34884  T

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Target: scaffold1462 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 337 - 375
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  337 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 375  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 63149 - 63111
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  63149 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 63111  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 145149 - 145201
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 200  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||    
T  145149 catgaaggtccaaaatcaaa-aatcttcaaattataaggatggaaa-ctaaacaa 145201  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 432513 - 432475
Alignment:
Q  146 catgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  432513 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 432475  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 332324 - 332360
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  332324 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 332360  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 12727 - 12763
Alignment:
Q  148 tgaaggtccaaaatcaaagaatcttcaaattacaagg 184  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  12727 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 12763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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