View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21463_high_2 (Length: 344)
Name: NF21463_high_2
Description: NF21463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21463_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 54472913 - 54472570
Alignment:
| Q |
1 |
gcaagaaattccataagcagagaacacatatgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtcatcttaaaagattaggattt |
100 |
Q |
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| T |
54472913 |
gcaagaaattccataagcagagaacacatatgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtcatcttaaaagaataggattt |
54472814 |
T |
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| Q |
101 |
aaattgtacaacttgtatttatatattacggttcaggcttcaaacccgcgcccctaatcaccccacgcaacttaccttcgtgtaactgtgttggttcaaa |
200 |
Q |
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| T |
54472813 |
aaattgtacaacttgtatttatatattacggttcaggcttcaaacccgcgtccctaatcacccctcgcaacttaccttcgtgtaactgtgttggttcaaa |
54472714 |
T |
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| Q |
201 |
aaggcatgtcactctcgcttcgcttaattgactctcccacttattagcattataagacatactcaacatatacaactagccttttaacaaatgatttgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472713 |
aaggcatgtcactctcgcttcgcttaattgactctcccacttattagcattataacacatactcaacatatacaactagccttttaacaaatgatttgaa |
54472614 |
T |
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| Q |
301 |
caaattagatcctttatgaccagggattgataaattcaaagata |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472613 |
caaattagatcctttatgaccagggattgataaattcaaagata |
54472570 |
T |
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