View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21464_high_2 (Length: 333)

Name: NF21464_high_2
Description: NF21464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21464_high_2
NF21464_high_2
[»] chr2 (3 HSPs)
chr2 (1-123)||(27750999-27751121)
chr2 (206-313)||(27750809-27750916)
chr2 (206-285)||(45391914-45391993)
[»] chr3 (9 HSPs)
chr3 (206-278)||(10511119-10511191)
chr3 (206-277)||(52737922-52737993)
chr3 (209-280)||(782930-782999)
chr3 (206-274)||(10514448-10514516)
chr3 (206-285)||(27825779-27825859)
chr3 (209-278)||(40131912-40131981)
chr3 (206-277)||(35240250-35240321)
chr3 (220-278)||(10661849-10661907)
chr3 (243-278)||(4607446-4607481)
[»] chr8 (1 HSPs)
chr8 (206-283)||(29908111-29908188)
[»] chr6 (3 HSPs)
chr6 (207-262)||(24249697-24249752)
chr6 (209-278)||(4555649-4555716)
chr6 (230-278)||(9231514-9231562)
[»] chr1 (4 HSPs)
chr1 (206-273)||(29850671-29850738)
chr1 (206-283)||(9905878-9905956)
chr1 (206-283)||(9908269-9908347)
chr1 (25-76)||(26653212-26653263)
[»] chr4 (1 HSPs)
chr4 (206-269)||(21214891-21214954)
[»] chr7 (1 HSPs)
chr7 (206-277)||(35130517-35130589)
[»] chr5 (5 HSPs)
chr5 (207-285)||(27405392-27405470)
chr5 (206-277)||(41326294-41326365)
chr5 (243-278)||(15424613-15424648)
chr5 (243-278)||(41949427-41949462)
chr5 (243-278)||(41951825-41951860)
[»] scaffold0017 (1 HSPs)
scaffold0017 (206-273)||(182941-183009)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 27751121 - 27750999
Alignment:
Q  1 agatgatcacccattatcatttctatatcaagatctatgaagggcgataggtgaatgtataattgaaataagaggagattatagcccgattaagtgttta 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27751121 agatgatcacccattatcagttctatatcaagatctatgaagggcgataggtgaatgtataattgaaataagaggagtttatagcccgattaagtgttta 27751022  T
Q  101 tttttcttgtcagccattaaaag 123  Q
     ||||||| ||||||||||||||    
T  27751021 cttttcttttcagccattaaaag 27750999  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 27750916 - 27750809
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtgggacaattcatgtaatatcactctttagtc 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  27750916 gagatatagtttacttacaagtagtattagtcctatagtagtatatatagttgtaaccacctcattagtgggacaattcacgtaatatcactctttagtc 27750817  T
Q  306 tttactat 313  Q
    ||||||||    
T  27750816 tttactat 27750809  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 45391993 - 45391914
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtgggacaattca 285  Q
    ||||||||||||| | |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  45391993 gagatatagtttagtcacaattagtattagtcctagagtagtatatatagttgtaaccaccccattagtgggtcaattca 45391914  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 10511191 - 10511119
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtggga 278  Q
    ||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||    
T  10511191 gagatatagtttagttacaagtagtattagttctatagtaatatatatagttgtaaccaccccattagtggga 10511119  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 52737993 - 52737922
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtggg 277  Q
    |||||||||||||  | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  52737993 gagatatagtttagcttcaagtagtattagtcctagagtagtatatatagttgtaaccaccccattagtggg 52737922  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 782999 - 782930
Alignment:
Q  209 atatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtgggaca 280  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||    
T  782999 atatagtttagttacaagtagtattagtccg--tgtagtatatatagttgtaaccaccccataagtgggaca 782930  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 10514516 - 10514448
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagt 274  Q
    |||||||| |||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  10514516 gagatataatttagttacaaatagtattagttctatagtagtatatatagttgtaaccaccccattagt 10514448  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 27825859 - 27825779
Alignment:
Q  206 gagatatagtttacttacaagtagtat-tagtcctattgtagtatatatagttgtaaccaccccattagtgggacaattca 285  Q
    |||||||||||||  | |||||||||  ||||||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  27825859 gagatatagtttaacttcaagtagtaaatagtcctatagtagtatatatagttgtagccaccccattagtgggtcaattca 27825779  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 40131912 - 40131981
Alignment:
Q  209 atatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtggga 278  Q
    |||||||||| ||||||| || |||| |||||| ||||||||||||||||||| ||||| ||||||||||    
T  40131912 atatagtttagttacaagcagcattaatcctatagtagtatatatagttgtaatcaccctattagtggga 40131981  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 35240250 - 35240321
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtggg 277  Q
    ||||||||||||| | ||   |||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  35240250 gagatatagtttagtcacggttagtattagttctagagtagtatatatagttgtaaccaccccattagtggg 35240321  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 10661907 - 10661849
Alignment:
Q  220 ttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtggga 278  Q
    ||||||||||||||| | ||||  || ||||||||||||||||||||||||||||||||    
T  10661907 ttacaagtagtattacttctatattattatatatagttgtaaccaccccattagtggga 10661849  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 278
Target Start/End: Original strand, 4607446 - 4607481
Alignment:
Q  243 gtagtatatatagttgtaaccaccccattagtggga 278  Q
    |||||||||||||||||||| |||||||||||||||    
T  4607446 gtagtatatatagttgtaacaaccccattagtggga 4607481  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 29908188 - 29908111
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtgggacaatt 283  Q
    ||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||  ||||||||||||||||    
T  29908188 gagatataggttagttacaagtagtattagtcctatagtagtgtatatagttgtaaccacttcattagtgggacaatt 29908111  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 24249697 - 24249752
Alignment:
Q  207 agatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaac 262  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  24249697 agatatagtttacttacaagtagcattagtcctatagtagtatatatagttgtaac 24249752  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 4555649 - 4555716
Alignment:
Q  209 atatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtggga 278  Q
    |||||||||| |||||||||||| |||||||   |||||||||||||||||||||||| ||| |||||||    
T  4555649 atatagtttagttacaagtagtactagtcctg--gtagtatatatagttgtaaccacctcataagtggga 4555716  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 9231514 - 9231562
Alignment:
Q  230 tattagtcctattgtagtatatatagttgtaaccaccccattagtggga 278  Q
    |||||||| ||| |||||||||||||||||| ||||| |||||| ||||    
T  9231514 tattagtcatatagtagtatatatagttgtagccacctcattagaggga 9231562  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 29850738 - 29850671
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattag 273  Q
    ||||||||||||| ||||||||||||||| |  ||| |||||||||||||||||||||||||||||||    
T  29850738 gagatatagtttagttacaagtagtattaattttatagtagtatatatagttgtaaccaccccattag 29850671  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 9905956 - 9905878
Alignment:
Q  206 gagatatagtttacttacaagtagtat-tagtcctattgtagtatatatagttgtaaccaccccattagtgggacaatt 283  Q
    |||||||||||||  | |||||||||  ||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  9905956 gagatatagtttagcttcaagtagtaaatagtcctatagtagtatatatagttgtagccaccccattagtgggtcaatt 9905878  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 9908347 - 9908269
Alignment:
Q  206 gagatatagtttacttacaagtagtat-tagtcctattgtagtatatatagttgtaaccaccccattagtgggacaatt 283  Q
    |||||||||||||  | |||||||||  ||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  9908347 gagatatagtttagcttcaagtagtaaatagtcctatagtagtatatatagttgtagccaccccattagtgggtcaatt 9908269  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 26653263 - 26653212
Alignment:
Q  25 atatcaagatctatgaagggcgataggtgaatgtataattgaaataagagga 76  Q
    ||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||    
T  26653263 atatcaagatccatgaagggtgataggtgaaggtataattggaataaaagga 26653212  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 21214891 - 21214954
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccacccca 269  Q
    |||||||||||||  | ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  21214891 gagatatagtttagcttcaagtagtactagtcctatagtagtatatatagttgtaaccacccca 21214954  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 35130517 - 35130589
Alignment:
Q  206 gagatatagtttacttacaagta-gtattagtcctattgtagtatatatagttgtaaccaccccattagtggg 277  Q
    |||||||||||||  | |||||| ||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  35130517 gagatatagtttaacttcaagtaagtactagtcctagagtagtatatatagttgtaaccaccccattagtggg 35130589  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 27405470 - 27405392
Alignment:
Q  207 agatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtgggacaattca 285  Q
    ||||||||||||  | ||||||||| ||||||||  ||||||||||||||||||| |||| ||||| |||| |||||||    
T  27405470 agatatagtttagcttcaagtagtactagtcctagagtagtatatatagttgtaatcacctcattaatgggtcaattca 27405392  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 41326365 - 41326294
Alignment:
Q  206 gagatatagtttacttacaagtagtattagtcctattgtagtatatatagttgtaaccaccccattagtggg 277  Q
    |||||||||||||   |||| ||||||||||| | | ||||||||||| |||||||||| ||||||||||||    
T  41326365 gagatatagtttagacacaattagtattagtcttgtagtagtatatatggttgtaaccatcccattagtggg 41326294  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 278
Target Start/End: Complemental strand, 15424648 - 15424613
Alignment:
Q  243 gtagtatatatagttgtaaccaccccattagtggga 278  Q
    |||||||||||||||||||| |||||||||||||||    
T  15424648 gtagtatatatagttgtaacaaccccattagtggga 15424613  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 278
Target Start/End: Complemental strand, 41949462 - 41949427
Alignment:
Q  243 gtagtatatatagttgtaaccaccccattagtggga 278  Q
    |||||||||||||||||||| |||||||||||||||    
T  41949462 gtagtatatatagttgtaacaaccccattagtggga 41949427  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 278
Target Start/End: Complemental strand, 41951860 - 41951825
Alignment:
Q  243 gtagtatatatagttgtaaccaccccattagtggga 278  Q
    |||||||||||||||||||| |||||||||||||||    
T  41951860 gtagtatatatagttgtaacaaccccattagtggga 41951825  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 182941 - 183009
Alignment:
Q  206 gagatatagtttacttacaagt-agtattagtcctattgtagtatatatagttgtaaccaccccattag 273  Q
    |||||| || |||||||||||| || ||||||| ||| |||||||||||||||||| ||||| ||||||    
T  182941 gagataaaggttacttacaagttagcattagtcttatagtagtatatatagttgtagccacctcattag 183009  T

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