View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21465_low_1 (Length: 512)

Name: NF21465_low_1
Description: NF21465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21465_low_1
NF21465_low_1
[»] chr1 (4 HSPs)
chr1 (188-448)||(52730542-52730803)
chr1 (188-448)||(18788284-18788545)
chr1 (12-56)||(52731024-52731068)
chr1 (12-56)||(18788760-18788804)
[»] chr2 (2 HSPs)
chr2 (188-448)||(19209263-19209524)
chr2 (12-56)||(19209741-19209785)
[»] chr8 (4 HSPs)
chr8 (188-448)||(18079351-18079612)
chr8 (203-448)||(44520389-44520634)
chr8 (15-56)||(18079093-18079134)
chr8 (12-63)||(44520864-44520913)
[»] chr4 (2 HSPs)
chr4 (203-419)||(54534188-54534404)
chr4 (12-56)||(54533911-54533955)
[»] chr3 (4 HSPs)
chr3 (188-419)||(34905011-34905243)
chr3 (188-448)||(7602636-7602897)
chr3 (12-63)||(34904746-34904797)
chr3 (12-61)||(7602370-7602419)
[»] chr5 (5 HSPs)
chr5 (188-448)||(33685471-33685734)
chr5 (449-496)||(1660995-1661042)
chr5 (449-496)||(1679793-1679840)
chr5 (12-63)||(33685212-33685263)
chr5 (449-496)||(1668260-1668307)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 188 - 448
Target Start/End: Complemental strand, 52730803 - 52730542
Alignment:
Q  188 tatcacgtttagtttaa-tatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaat 286  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||    
T  52730803 tatcacgtttactttaaatatttaagactggaggtatttataaatattctatccattagggcaagttgtgtaattctcaaattttagttatgggtaaaat 52730704  T
Q  287 catatgtaaaagtacaatttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatctga 386  Q
    |||||| ||||||||||||||| |||||||||| |  ||||||||  | | || | || ||||||||||||||||||||||| |||| |||||||||  |    
T  52730703 catatgcaaaagtacaatttgcaattcacctactaggtactgtagcaacaggtccttggtaagcaatctggaccgcatgttgattttgaggtacatccaa 52730604  T
Q  387 cggtttaaactcgatcactcacggtgagagaccaatttatgtctctcactctagaagccgcc 448  Q
    |||||||||| || |||||||||||||||||||   ||  ||||| ||||||||||||||||    
T  52730603 cggtttaaacacggtcactcacggtgagagacctgatttggtctcccactctagaagccgcc 52730542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 188 - 448
Target Start/End: Complemental strand, 18788545 - 18788284
Alignment:
Q  188 tatcacgtttagtttaa-tatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaat 286  Q
    ||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||    
T  18788545 tatcacgtttactttaaatatttaagaccggaggtatttataaatattctatccattagggcaagttgtgtaattctcaaattttagttatgggtaaaat 18788446  T
Q  287 catatgtaaaagtacaatttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatctga 386  Q
    || ||| ||||||||||||||| |||||||||| |  ||||||||  | | || | || ||||||||||||||||||||||| |||| |||||||||  |    
T  18788445 cacatgcaaaagtacaatttgcaattcacctactaggtactgtagcaacaggtccttggtaagcaatctggaccgcatgttgattttgaggtacatccaa 18788346  T
Q  387 cggtttaaactcgatcactcacggtgagagacc-aatttatgtctctcactctagaagccgcc 448  Q
    |||||||||| || |||||||||||||||||||  ||||| ||||| ||| ||||||||||||    
T  18788345 cggtttaaacacggtcactcacggtgagagacctgattta-gtctcccacgctagaagccgcc 18788284  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 52731068 - 52731024
Alignment:
Q  12 atgaacactagtgttgggtgtaaagaactcatgatgctggacatg 56  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  52731068 atgaacactggtgttgggtgtaaagaactcatgatgctggacatg 52731024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 18788804 - 18788760
Alignment:
Q  12 atgaacactagtgttgggtgtaaagaactcatgatgctggacatg 56  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||    
T  18788804 atgaacactggtgttgggtgtaaagaacttatgatgctggacatg 18788760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 188 - 448
Target Start/End: Complemental strand, 19209524 - 19209263
Alignment:
Q  188 tatcacgtttagtttaa-tatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaat 286  Q
    ||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  19209524 tatcacgtttactttaaatatttaagaccggaggtatttataaatattctatccattaaggcaagttgtgtaattctcaaattttagttatgggtaaaat 19209425  T
Q  287 catatgtaaaagtacaatttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatctga 386  Q
    || ||| ||||||||||||||| |||||||||| |  ||||||||  | | || | || ||||||||||||||||||||||| |||| |||||||||  |    
T  19209424 cacatgcaaaagtacaatttgcaattcacctactaggtactgtagcaacaggtccttggtaagcaatctggaccgcatgttgattttgaggtacatccaa 19209325  T
Q  387 cggtttaaactcgatcactcacggtgagagaccaatttatgtctctcactctagaagccgcc 448  Q
    |||||||||| || |||||||||||||||||||   ||  ||||| ||| ||||||||||||    
T  19209324 cggtttaaacacggtcactcacggtgagagacctgatttggtctcccacactagaagccgcc 19209263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 19209785 - 19209741
Alignment:
Q  12 atgaacactagtgttgggtgtaaagaactcatgatgctggacatg 56  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||    
T  19209785 atgaacactggtgttgggtgtaaagaacttatgatgctggacatg 19209741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 188 - 448
Target Start/End: Original strand, 18079351 - 18079612
Alignment:
Q  188 tatcacgtttagtttaa-tatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaat 286  Q
    ||||||||||| ||||| ||||||||||  | ||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||    
T  18079351 tatcacgtttactttaaatatttaagaccagaggtatttataaatattctatccattagggcaagttgtgtaattctcaaattttagttatgggtaaaat 18079450  T
Q  287 catatgtaaaagtacaatttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatctga 386  Q
    |||||| ||||||||||||||| |||||||||| |  ||||||||  | | || | || ||||||||||||||||||||||| |||| |||||||||  |    
T  18079451 catatgcaaaagtacaatttgcaattcacctactaggtactgtagcaacaggtccttggtaagcaatctggaccgcatgttgattttgaggtacatccaa 18079550  T
Q  387 cggtttaaactcgatcactcacggtgagagaccaatttatgtctctcactctagaagccgcc 448  Q
    |||||||||| || |||||||||||||||||||   ||  ||||| ||| ||||||||||||    
T  18079551 cggtttaaacacggtcactcacggtgagagacctgatttggtctcccacgctagaagccgcc 18079612  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 203 - 448
Target Start/End: Complemental strand, 44520634 - 44520389
Alignment:
Q  203 aatatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaatcatatgtaaaagtaca 302  Q
    |||||||||||| || ||||||||||||||||||||| ||||  | ||||| |||||||||||||||||| |||||| |||||||| ||| |||||||||    
T  44520634 aatatttaagaccggaggtatttataaatattctatcaattagggcaagttgtgtaattctcaaattttaattatggataaaatcacatgcaaaagtaca 44520535  T
Q  303 atttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatctgacggtttaaactcgatc 402  Q
    |||||| |||||||||| |  ||||||||  | | || |||| |||||||||||||||||||||||||||| ||| |||||  ||||||||||| || ||    
T  44520534 atttgcaattcacctactaggtactgtagcaacaggtccctggtaagcaatctggaccgcatgttggttttgaggcacatccaacggtttaaacgcggtc 44520435  T
Q  403 actcacggtgagagaccaatttatgtctctcactctagaagccgcc 448  Q
    |||||||||||||||||   ||  ||||| ||| ||||||||||||    
T  44520434 actcacggtgagagacctgatttggtctcccacgctagaagccgcc 44520389  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 18079093 - 18079134
Alignment:
Q  15 aacactagtgttgggtgtaaagaactcatgatgctggacatg 56  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  18079093 aacactggtgttgggtgtaaagaacttatgatgctggacatg 18079134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 44520913 - 44520864
Alignment:
Q  12 atgaacactagtgttgggtgtaaagaactcatgatgctggacatggtggtag 63  Q
    ||||||| | ||||||||||||  ||||||||||||||||||||| ||||||    
T  44520913 atgaacattggtgttgggtgta--gaactcatgatgctggacatgttggtag 44520864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 203 - 419
Target Start/End: Original strand, 54534188 - 54534404
Alignment:
Q  203 aatatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaatcatatgtaaaagtaca 302  Q
    |||||||||||| || ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| ||  |||||||||    
T  54534188 aatatttaagaccggaggtatttataaatattctatccattaaggcaagttgtgtaattctcaaattttagttatgggtaaaatcacatacaaaagtaca 54534287  T
Q  303 atttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatctgacggtttaaactcgatc 402  Q
    |||||| |||||||||| |  ||||||||  | | || | || ||| ||||||||||| ||||||| |||| |||||||||  ||||||||||| || ||    
T  54534288 atttgcaattcacctactaggtactgtagcaacaggtccttggtaaacaatctggaccacatgttgattttgaggtacatccaacggtttaaacacggtc 54534387  T
Q  403 actcacggtgagagacc 419  Q
    |||||||||||||||||    
T  54534388 actcacggtgagagacc 54534404  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 54533911 - 54533955
Alignment:
Q  12 atgaacactagtgttgggtgtaaagaactcatgatgctggacatg 56  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  54533911 atgaacactggtgttgggtgtaaagaactcatgatgctggacatg 54533955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 188 - 419
Target Start/End: Original strand, 34905011 - 34905243
Alignment:
Q  188 tatcacgtttagtttaa-tatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaat 286  Q
    ||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||    
T  34905011 tatcacgtttactttaaatatttaagaccggaggtatttataaatattctatccattagggcaagttgtgtaattctcaaattttagttatgggtaaaat 34905110  T
Q  287 catatgtaaaagtacaatttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatctga 386  Q
    || ||| ||||||||||||||| |||| ||||| |  ||||||||  | | || |||| |||||||||||||| ||||||||||||| ||| |||||  |    
T  34905111 cacatgcaaaagtacaatttgcaattcgcctactaggtactgtagcaacaggtccctggtaagcaatctggactgcatgttggttttgaggcacatccaa 34905210  T
Q  387 cggtttaaactcgatcactcacggtgagagacc 419  Q
    | |||||||| || |||| ||||||||||||||    
T  34905211 cagtttaaacacggtcacccacggtgagagacc 34905243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 188 - 448
Target Start/End: Original strand, 7602636 - 7602897
Alignment:
Q  188 tatcacgtttagtttaa-tatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaat 286  Q
    ||||||||||| ||||| |||||||||| |  ||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||    
T  7602636 tatcacgtttactttaaatatttaagaccgaaggtatttataaatattctatccattagggcaagttgtgtaattctcaaattttagttatgggtaaaat 7602735  T
Q  287 catatgtaaaagtacaatttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatctga 386  Q
    || ||| ||||||||||||||| |||||||||| |  ||||||||  | | || |||| ||  ||||||||||||||||||| |||| ||||| |||  |    
T  7602736 cacatgcaaaagtacaatttgcaattcacctactaggtactgtagcaacaggtccctggtacacaatctggaccgcatgttgattttgaggtatatccaa 7602835  T
Q  387 cggtttaaactcgatcactcacggtgagagaccaatttatgtctctcactctagaagccgcc 448  Q
    | |||||||| |  |||||||||||||||||||   ||  ||||| ||| ||||||||||||    
T  7602836 cagtttaaacacagtcactcacggtgagagacctgatttggtctcccacgctagaagccgcc 7602897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 34904746 - 34904797
Alignment:
Q  12 atgaacactagtgttgggtgtaaagaactcatgatgctggacatggtggtag 63  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  34904746 atgaacactggtgttggatgtaaagaactcatgatgctggacatgttggtag 34904797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 7602370 - 7602419
Alignment:
Q  12 atgaacactagtgttgggtgtaaagaactcatgatgctggacatggtggt 61  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  7602370 atgaatactggtgttgggtgtaaagaactcatgatgctggacatgttggt 7602419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 188 - 448
Target Start/End: Original strand, 33685471 - 33685734
Alignment:
Q  188 tatcacgtttagtttaa-tatttaagactgggggtatttataaatattctatccattaaagtaagttttgtaattctcaaattttagttatgggtaaaat 286  Q
    ||||||||||| ||||| |||||||||| || |||||||||||||||| |||||||||  | ||||| ||||||||||||||||||||||||||||||||    
T  33685471 tatcacgtttactttaaatatttaagaccggaggtatttataaatattatatccattagggcaagttgtgtaattctcaaattttagttatgggtaaaat 33685570  T
Q  287 catatgtaaa--agtacaatttgccattcacctacaacatactgtagagaaaagttcctgataagcaatctggaccgcatgttggttttaaggtacatct 384  Q
    || ||| |||  |||||||||||| |||||||||| |  ||||||||  | | || |||| |||||||||||||||||||||| ||||| ||| |||||     
T  33685571 cacatgcaaaatagtacaatttgcaattcacctactaggtactgtagcaacaggtccctggtaagcaatctggaccgcatgttagttttgaggcacatcc 33685670  T
Q  385 gacggtttaaactcgatcactcacggtgagagaccaatttatgtctctcactctagaagccgcc 448  Q
     ||||||||||| || ||||||| |||||||||||   ||  ||||| ||| ||||||||||||    
T  33685671 aacggtttaaacacggtcactcatggtgagagacctgatttggtctcccacgctagaagccgcc 33685734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 496
Target Start/End: Complemental strand, 1661042 - 1660995
Alignment:
Q  449 gtggaagacacatatcttcccatgaatagtactattgaaaagggtaac 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1661042 gtggaagacacatatcttcccatgaatagtactattgaaaagggtaac 1660995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 496
Target Start/End: Complemental strand, 1679840 - 1679793
Alignment:
Q  449 gtggaagacacatatcttcccatgaatagtactattgaaaagggtaac 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1679840 gtggaagacacatatcttcccatgaatagtactattgaaaagggtaac 1679793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 33685212 - 33685263
Alignment:
Q  12 atgaacactagtgttgggtgtaaagaactcatgatgctggacatggtggtag 63  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  33685212 atgaacactggtgttgggtgtaaagaactcatgatgctggacatgttggtag 33685263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 496
Target Start/End: Complemental strand, 1668307 - 1668260
Alignment:
Q  449 gtggaagacacatatcttcccatgaatagtactattgaaaagggtaac 496  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  1668307 gtggaagacacatattttcccatgaatagtactattggaaaggctaac 1668260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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