View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21466_high_3 (Length: 341)
Name: NF21466_high_3
Description: NF21466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21466_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 53927912 - 53927576
Alignment:
| Q |
1 |
gggtctgaaccacctcccaatgaccatgttggcaggcttgcatcaatgcagtctgttgatgatataaactgtaaagtaagtaaaagaagtttccctcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
53927912 |
gggtctgaaccacctcccaatgaccatgttggcaggcttgcatcaatgcagtctgttaatgatattaactgtaaagtaagtaaaagaagtttccctctcc |
53927813 |
T |
|
| Q |
101 |
gtaaacgaaagaaacatggcgctattcatacccaaaacaacaaaagttacagttttagacaattagcagaagattgtgtgccagatcaatgttttcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53927812 |
gtaaacgaaagaaacatggcgctattcatacccaaaacaacaaaagttacagttttagacaattagcagaagattgtgtgccagatcaatgttttcaaag |
53927713 |
T |
|
| Q |
201 |
gcaaatcgcagagaataggggtttgtttgaattccactatgctacagcaccagtgtaggcacaatttgaaaacaatttgtactaattgcatcgcagaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53927712 |
gcaaatcgcagagaataggggtttgtttgaattccactatgctacagcaccagtgaaggcacaatttgaaaacaatttgtactaattgcatcgcagaaca |
53927613 |
T |
|
| Q |
301 |
atagcagtttgtccaaactccgt-aatctgtggtgct |
336 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53927612 |
atagcagtttgtccaaactccgtcaatctgtggtgct |
53927576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University