View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21467_low_2 (Length: 243)
Name: NF21467_low_2
Description: NF21467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21467_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 52649634 - 52649409
Alignment:
| Q |
18 |
cataccaggtttctactatacacggattgcatactatgcttacaagggatacaaagggttctcattctctaacatacctcctgtatagttttctccagtg |
117 |
Q |
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| T |
52649634 |
cataccaggtttctactatacacggattgcatactatgcttacaagggatacaaagggttctcattctctaacatacctcctgtatagttttctccagta |
52649535 |
T |
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| Q |
118 |
ccatccttatgtatagatgttgatcttctatggttgcccttttgttttatttgttctgccttgcgtctaatgtacatttacattcactacaaatgctctg |
217 |
Q |
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| T |
52649534 |
ccatccttatgtatagatgttgatcttctatggttgcccttttgttttatttgttctgccttgcgtctaatgtacatttacattcactacaaatgctctg |
52649435 |
T |
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| Q |
218 |
aacaaatatatttacaaattatagct |
243 |
Q |
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| T |
52649434 |
aacaaatatatttacaaattatagct |
52649409 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 16794314 - 16794397
Alignment:
| Q |
18 |
cataccaggtttctactatacacggattgcatactatgcttacaagggatacaaagggttctcattctctaacatacctcctgt |
101 |
Q |
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|||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
16794314 |
catacctggtttctactacacgaggattgcatattatgcttacaaaggatacaaagggttctctttctctaacatacctcctgt |
16794397 |
T |
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