View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21468_high_1 (Length: 459)
Name: NF21468_high_1
Description: NF21468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21468_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 208 - 412
Target Start/End: Original strand, 22041194 - 22041398
Alignment:
| Q |
208 |
aagagtaaaatatattttaaacaatgtacatatttaaaagatttagtagttttgtaacaaataaagcataaagatttatgaaaaaagagtagagtttgca |
307 |
Q |
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| T |
22041194 |
aagagtaaaatatattttaaacaatgtacatatttaaaagatttagtagttttgtaacaaataaagcataaagatttatgaaaaaagagtagaggttgca |
22041293 |
T |
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| Q |
308 |
tgggtaagtattgactggaaaatttcattgcttatattttaatgtatgtagttgatgttgtatatctaattgagttgtgaacaatagtttattttcatta |
407 |
Q |
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| T |
22041294 |
tgcgtaactattgactggaaaatttcattgcttatattttaatgtatgtagttgatgttgtatatctaattgagttttgaacaatagtttattttcatta |
22041393 |
T |
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| Q |
408 |
caatg |
412 |
Q |
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||||| |
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| T |
22041394 |
caatg |
22041398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 22040988 - 22041153
Alignment:
| Q |
21 |
acatcatcttagttgggcttagagtagtggatatatttggctggattgtatttccttaatggaccaacatgacacaagtttggtttgttttattattatg |
120 |
Q |
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||||||| || ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22040988 |
acatcattttcgttgggcttagagtagttgatatatttggctggattgtattttcttaatggaccaacatggcacaagtttggtttgttttattattatg |
22041087 |
T |
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| Q |
121 |
tacaaatttacttttcatcttacattataatacatataatttaagaagttataagaaatgcattat |
186 |
Q |
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| T |
22041088 |
tacaaatttacttttcatcttacattataatacttataatgtaaaaagttagaagaaatgcattat |
22041153 |
T |
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