View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21468_high_3 (Length: 446)
Name: NF21468_high_3
Description: NF21468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21468_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 39610097 - 39610519
Alignment:
| Q |
8 |
accaattcgataaatgacaaccttttaacaattgatgtaaattgtcatcctataagacaaatacaaaataccatttattaaatttacctagtatgtctga |
107 |
Q |
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| T |
39610097 |
accaattcgataaatgacaaccttttaacaattgatgtaaattgtcatcctataagacaaatacaaaataccatttattaaatttacctagtatgtctga |
39610196 |
T |
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| Q |
108 |
tgtttcatcatatggtttggctttacaggagatatatcaagagagggttgtgagtcaccgccaagtggaattcaatagactggtgagagaaatggaggag |
207 |
Q |
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| T |
39610197 |
tgtttcatcatatggtttggctttacaggagatatatcaagagagggttgtgagtcaccgccaagtggaattcaatagactgatgagagaaagggaggag |
39610296 |
T |
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| Q |
208 |
cgtatctctaggattttaccctccaggaaacaggagagggaaaaaatgagaaaattgaagtattatcttgagctggaagaggagagaaaacaaaaactgc |
307 |
Q |
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| T |
39610297 |
cgtatctctaggattttaccctccaggaaacaggagagggaaaaaatgagaaaattgaagtattatcttgagctggaagaggagagaaaacaaaaactgc |
39610396 |
T |
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| Q |
308 |
tcaaagaagaagaagctcggaagcgtcaaggtattcattattgatttcttttcctgcaacgtataaaagcctaagtttgta-nnnnnnnnnccttcagat |
406 |
Q |
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| T |
39610397 |
tcaaagaagaagaagctcggaagcgtcaaggtattcattattgatttcttttcctgcaacgtataaaagcctaagtttgtattttttttttccttcagat |
39610496 |
T |
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| Q |
407 |
cttgtagtattgaaaggattaca |
429 |
Q |
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| T |
39610497 |
cttgtagtattgaaaggattaca |
39610519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 107 - 360
Target Start/End: Complemental strand, 40159511 - 40159258
Alignment:
| Q |
107 |
atgtttcatcatatggtttggctttacaggagatatatcaagagagggttgtgagtcaccgccaagtggaattcaatagactggtgagagaaatggagga |
206 |
Q |
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| T |
40159511 |
atgttttatcatgtggtttggctttgcaggagatatatcaagagagagttgtgagtcaccgccaagcggaattcaataggttgcagagagacaggctgga |
40159412 |
T |
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| Q |
207 |
gcgtatctctaggattttaccctccaggaaacaggagagggaaaaaatgagaaaattgaagtattatcttgagctggaagaggagagaaaacaaaaactg |
306 |
Q |
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| T |
40159411 |
caggatctctaagattttactctccaggaaacaggagagggaaaaaatgagaaaattgaagtattatcttaaggtggaagaagagaaaagacagaaattg |
40159312 |
T |
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| Q |
307 |
ctcaaagaagaagaagctcggaagcgtcaaggtattcattattgatttcttttc |
360 |
Q |
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| T |
40159311 |
cgtgaggaggaagaagctcgggagcgtgaaggtaattgttattgatttgttttc |
40159258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 374
Target Start/End: Complemental strand, 33945574 - 33945429
Alignment:
| Q |
229 |
tccaggaaacaggagagggaaaaaatgagaaaattgaagtattatcttgagctggaagaggagagaaaacaaaaactgctcaaagaagaagaagctcgga |
328 |
Q |
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||||||||||||||||||||||||||||| || |||||| |||||||| | ||||||| ||||| | |||||| || | || ||||||||||||| |
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| T |
33945574 |
tccaggaaacaggagagggaaaaaatgaggaagttgaagcattatcttcggttggaagaacagagacagcaaaaattgaatgaggaggaagaagctcgga |
33945475 |
T |
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| Q |
329 |
agcgtcaaggtattcattattgatttcttttcctgcaacgtataaa |
374 |
Q |
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||| | |||||| ||||| || |||| ||| |||| ||| |||||| |
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| T |
33945474 |
agcatgaaggtaatcatttttaatttgtttgcctggaacatataaa |
33945429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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